Experiment: 150_mag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS15920 and AMB_RS15925 are separated by 120 nucleotides
AMB_RS15920: AMB_RS15920 - HlyD family type I secretion periplasmic adaptor subunit, at 3,410,349 to 3,411,680
_RS15920
AMB_RS15925: AMB_RS15925 - hypothetical protein, at 3,411,801 to 3,412,028
_RS15925
Position (kb)
3411
3412
3413 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3411.224 kb on + strand, within AMB_RS15920 at 3411.268 kb on - strand, within AMB_RS15920 at 3411.268 kb on - strand, within AMB_RS15920 at 3411.378 kb on + strand, within AMB_RS15920 at 3411.379 kb on - strand, within AMB_RS15920 at 3411.402 kb on + strand, within AMB_RS15920 at 3411.402 kb on + strand, within AMB_RS15920 at 3411.402 kb on + strand, within AMB_RS15920 at 3411.402 kb on + strand, within AMB_RS15920 at 3411.403 kb on - strand, within AMB_RS15920 at 3411.403 kb on - strand, within AMB_RS15920 at 3411.403 kb on - strand, within AMB_RS15920 at 3411.403 kb on - strand, within AMB_RS15920 at 3411.483 kb on - strand, within AMB_RS15920 at 3411.507 kb on + strand, within AMB_RS15920 at 3411.507 kb on + strand, within AMB_RS15920 at 3411.507 kb on + strand, within AMB_RS15920 at 3411.507 kb on + strand, within AMB_RS15920 at 3411.507 kb on + strand, within AMB_RS15920 at 3411.507 kb on + strand, within AMB_RS15920 at 3411.507 kb on + strand, within AMB_RS15920 at 3411.507 kb on + strand, within AMB_RS15920 at 3411.508 kb on - strand, within AMB_RS15920 at 3411.508 kb on - strand, within AMB_RS15920 at 3411.508 kb on - strand, within AMB_RS15920 at 3411.510 kb on - strand, within AMB_RS15920 at 3411.510 kb on - strand, within AMB_RS15920 at 3411.510 kb on - strand, within AMB_RS15920 at 3411.510 kb on - strand, within AMB_RS15920 at 3411.510 kb on - strand, within AMB_RS15920 at 3411.627 kb on + strand at 3411.643 kb on - strand at 3411.705 kb on + strand at 3411.705 kb on + strand at 3412.040 kb on - strand at 3412.040 kb on - strand at 3412.125 kb on + strand at 3412.126 kb on - strand at 3412.126 kb on - strand at 3412.371 kb on + strand at 3412.521 kb on + strand at 3412.599 kb on + strand at 3412.881 kb on + strand at 3412.881 kb on + strand at 3412.897 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 150_mag_3 remove 3,411,224 + AMB_RS15920 0.66 -0.4 3,411,268 - AMB_RS15920 0.69 +1.9 3,411,268 - AMB_RS15920 0.69 -0.0 3,411,378 + AMB_RS15920 0.77 -0.3 3,411,379 - AMB_RS15920 0.77 -2.3 3,411,402 + AMB_RS15920 0.79 -0.4 3,411,402 + AMB_RS15920 0.79 +0.3 3,411,402 + AMB_RS15920 0.79 -0.4 3,411,402 + AMB_RS15920 0.79 -0.2 3,411,403 - AMB_RS15920 0.79 -0.4 3,411,403 - AMB_RS15920 0.79 -1.3 3,411,403 - AMB_RS15920 0.79 -0.1 3,411,403 - AMB_RS15920 0.79 -0.2 3,411,483 - AMB_RS15920 0.85 +0.1 3,411,507 + AMB_RS15920 0.87 +0.7 3,411,507 + AMB_RS15920 0.87 -0.9 3,411,507 + AMB_RS15920 0.87 -0.5 3,411,507 + AMB_RS15920 0.87 +0.6 3,411,507 + AMB_RS15920 0.87 -0.5 3,411,507 + AMB_RS15920 0.87 -3.1 3,411,507 + AMB_RS15920 0.87 +0.2 3,411,507 + AMB_RS15920 0.87 -0.7 3,411,508 - AMB_RS15920 0.87 -0.2 3,411,508 - AMB_RS15920 0.87 +0.5 3,411,508 - AMB_RS15920 0.87 -1.2 3,411,510 - AMB_RS15920 0.87 +0.1 3,411,510 - AMB_RS15920 0.87 -0.4 3,411,510 - AMB_RS15920 0.87 -0.4 3,411,510 - AMB_RS15920 0.87 -0.4 3,411,510 - AMB_RS15920 0.87 +0.3 3,411,627 + -1.3 3,411,643 - -1.1 3,411,705 + -0.2 3,411,705 + -0.3 3,412,040 - -1.3 3,412,040 - -0.3 3,412,125 + +0.8 3,412,126 - +0.4 3,412,126 - -0.3 3,412,371 + -0.0 3,412,521 + -0.8 3,412,599 + -0.2 3,412,881 + -0.9 3,412,881 + -2.4 3,412,897 + +0.2
Or see this region's nucleotide sequence