Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS12280

Experiment: 150_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS12260 and AMB_RS12265 are separated by 276 nucleotidesAMB_RS12265 and AMB_RS12270 overlap by 1 nucleotidesAMB_RS12270 and AMB_RS12275 overlap by 17 nucleotidesAMB_RS12275 and AMB_RS12280 overlap by 1 nucleotidesAMB_RS12280 and AMB_RS12285 are separated by 442 nucleotides AMB_RS12260: AMB_RS12260 - Rep protein, at 2,618,220 to 2,619,482 _RS12260 AMB_RS12265: AMB_RS12265 - hypothetical protein, at 2,619,759 to 2,619,971 _RS12265 AMB_RS12270: AMB_RS12270 - hypothetical protein, at 2,619,971 to 2,620,276 _RS12270 AMB_RS12275: AMB_RS12275 - hypothetical protein, at 2,620,260 to 2,620,463 _RS12275 AMB_RS12280: AMB_RS12280 - DUF736 domain-containing protein, at 2,620,463 to 2,620,828 _RS12280 AMB_RS12285: AMB_RS12285 - Na+/H+ antiporter NhaA, at 2,621,271 to 2,622,422 _RS12285 Position (kb) 2620 2621Strain fitness (log2 ratio) -1 0 1at 2621.201 kb on + strandat 2621.201 kb on + strandat 2621.202 kb on - strandat 2621.267 kb on + strandat 2621.268 kb on - strandat 2621.268 kb on - strandat 2621.272 kb on + strandat 2621.272 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_mag_3
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2,621,201 + -0.3
2,621,201 + -0.1
2,621,202 - -0.9
2,621,267 + -0.3
2,621,268 - -0.2
2,621,268 - +0.7
2,621,272 + +1.3
2,621,272 + -0.3

Or see this region's nucleotide sequence