Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS06300

Experiment: 150_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS06290 and AMB_RS06295 are separated by 397 nucleotidesAMB_RS06295 and AMB_RS06300 overlap by 4 nucleotidesAMB_RS06300 and AMB_RS06305 overlap by 4 nucleotidesAMB_RS06305 and AMB_RS06310 overlap by 4 nucleotides AMB_RS06290: AMB_RS06290 - hypothetical protein, at 1,318,772 to 1,319,632 _RS06290 AMB_RS06295: AMB_RS06295 - LysR family transcriptional regulator, at 1,320,030 to 1,320,440 _RS06295 AMB_RS06300: AMB_RS06300 - phenylacetyl CoA, at 1,320,437 to 1,323,205 _RS06300 AMB_RS06305: AMB_RS06305 - 4Fe-4S dicluster domain-containing protein, at 1,323,202 to 1,323,855 _RS06305 AMB_RS06310: AMB_RS06310 - phenylacetyl CoA, at 1,323,852 to 1,324,778 _RS06310 Position (kb) 1320 1321 1322 1323 1324Strain fitness (log2 ratio) -3 -2 -1 0 1at 1319.438 kb on + strand, within AMB_RS06290at 1319.439 kb on - strand, within AMB_RS06290at 1319.439 kb on - strand, within AMB_RS06290at 1319.713 kb on - strandat 1319.769 kb on + strandat 1319.888 kb on + strandat 1319.889 kb on - strandat 1319.924 kb on + strandat 1319.924 kb on + strandat 1319.947 kb on + strandat 1319.948 kb on - strandat 1319.963 kb on + strandat 1320.073 kb on - strand, within AMB_RS06295at 1320.126 kb on + strand, within AMB_RS06295at 1320.126 kb on + strand, within AMB_RS06295at 1320.127 kb on - strand, within AMB_RS06295at 1320.127 kb on - strand, within AMB_RS06295at 1320.147 kb on + strand, within AMB_RS06295at 1320.147 kb on + strand, within AMB_RS06295at 1320.148 kb on - strand, within AMB_RS06295at 1320.148 kb on - strand, within AMB_RS06295at 1320.491 kb on + strandat 1320.491 kb on + strandat 1320.491 kb on + strandat 1320.491 kb on + strandat 1320.491 kb on + strandat 1320.492 kb on - strandat 1320.492 kb on - strandat 1320.492 kb on - strandat 1320.497 kb on + strandat 1320.498 kb on - strandat 1320.498 kb on - strandat 1320.645 kb on - strandat 1320.854 kb on + strand, within AMB_RS06300at 1320.855 kb on - strand, within AMB_RS06300at 1320.855 kb on - strand, within AMB_RS06300at 1320.855 kb on - strand, within AMB_RS06300at 1320.855 kb on - strand, within AMB_RS06300at 1320.855 kb on - strand, within AMB_RS06300at 1320.935 kb on + strand, within AMB_RS06300at 1320.936 kb on - strand, within AMB_RS06300at 1320.954 kb on - strand, within AMB_RS06300at 1320.977 kb on + strand, within AMB_RS06300at 1320.977 kb on + strand, within AMB_RS06300at 1320.978 kb on - strand, within AMB_RS06300at 1320.978 kb on - strand, within AMB_RS06300at 1321.010 kb on + strand, within AMB_RS06300at 1321.010 kb on + strand, within AMB_RS06300at 1321.010 kb on + strand, within AMB_RS06300at 1321.010 kb on + strand, within AMB_RS06300at 1321.010 kb on + strand, within AMB_RS06300at 1321.011 kb on - strand, within AMB_RS06300at 1321.011 kb on - strand, within AMB_RS06300at 1321.011 kb on - strand, within AMB_RS06300at 1321.011 kb on - strand, within AMB_RS06300at 1321.011 kb on - strand, within AMB_RS06300at 1321.034 kb on - strand, within AMB_RS06300at 1321.065 kb on - strand, within AMB_RS06300at 1321.065 kb on - strand, within AMB_RS06300at 1321.274 kb on + strand, within AMB_RS06300at 1321.274 kb on + strand, within AMB_RS06300at 1321.274 kb on + strand, within AMB_RS06300at 1321.299 kb on - strand, within AMB_RS06300at 1321.511 kb on + strand, within AMB_RS06300at 1321.511 kb on + strand, within AMB_RS06300at 1321.511 kb on + strand, within AMB_RS06300at 1321.511 kb on + strand, within AMB_RS06300at 1321.512 kb on - strand, within AMB_RS06300at 1321.512 kb on - strand, within AMB_RS06300at 1321.513 kb on + strand, within AMB_RS06300at 1321.514 kb on - strand, within AMB_RS06300at 1321.902 kb on - strand, within AMB_RS06300at 1321.902 kb on - strand, within AMB_RS06300at 1321.970 kb on + strand, within AMB_RS06300at 1321.970 kb on + strand, within AMB_RS06300at 1321.970 kb on + strand, within AMB_RS06300at 1321.970 kb on + strand, within AMB_RS06300at 1321.970 kb on + strand, within AMB_RS06300at 1321.970 kb on + strand, within AMB_RS06300at 1321.970 kb on + strand, within AMB_RS06300at 1321.970 kb on + strand, within AMB_RS06300at 1321.970 kb on + strand, within AMB_RS06300at 1321.970 kb on + strand, within AMB_RS06300at 1321.971 kb on - strand, within AMB_RS06300at 1321.971 kb on - strand, within AMB_RS06300at 1321.971 kb on - strand, within AMB_RS06300at 1321.971 kb on - strand, within AMB_RS06300at 1321.971 kb on - strand, within AMB_RS06300at 1321.971 kb on - strand, within AMB_RS06300at 1321.971 kb on - strand, within AMB_RS06300at 1321.971 kb on - strand, within AMB_RS06300at 1321.971 kb on - strand, within AMB_RS06300at 1321.971 kb on - strand, within AMB_RS06300at 1322.037 kb on - strand, within AMB_RS06300at 1322.125 kb on + strand, within AMB_RS06300at 1322.125 kb on + strand, within AMB_RS06300at 1322.125 kb on + strand, within AMB_RS06300at 1322.126 kb on - strand, within AMB_RS06300at 1322.126 kb on - strand, within AMB_RS06300at 1322.126 kb on - strand, within AMB_RS06300at 1322.126 kb on - strand, within AMB_RS06300at 1322.126 kb on - strand, within AMB_RS06300at 1322.126 kb on - strand, within AMB_RS06300at 1322.126 kb on - strand, within AMB_RS06300at 1322.126 kb on - strand, within AMB_RS06300at 1322.126 kb on - strand, within AMB_RS06300at 1322.348 kb on + strand, within AMB_RS06300at 1322.349 kb on - strand, within AMB_RS06300at 1322.603 kb on + strand, within AMB_RS06300at 1322.604 kb on - strand, within AMB_RS06300at 1322.604 kb on - strand, within AMB_RS06300at 1322.604 kb on - strand, within AMB_RS06300at 1322.604 kb on - strand, within AMB_RS06300at 1322.604 kb on - strand, within AMB_RS06300at 1322.615 kb on + strand, within AMB_RS06300at 1322.822 kb on + strand, within AMB_RS06300at 1322.823 kb on - strand, within AMB_RS06300at 1322.823 kb on - strand, within AMB_RS06300at 1323.305 kb on - strand, within AMB_RS06305at 1323.305 kb on - strand, within AMB_RS06305at 1323.460 kb on + strand, within AMB_RS06305at 1323.460 kb on + strand, within AMB_RS06305at 1323.460 kb on + strand, within AMB_RS06305at 1323.460 kb on + strand, within AMB_RS06305at 1323.484 kb on + strand, within AMB_RS06305at 1323.506 kb on - strand, within AMB_RS06305at 1323.517 kb on + strand, within AMB_RS06305at 1323.517 kb on + strand, within AMB_RS06305at 1323.518 kb on - strand, within AMB_RS06305at 1323.518 kb on - strand, within AMB_RS06305at 1323.518 kb on - strand, within AMB_RS06305at 1323.741 kb on + strand, within AMB_RS06305at 1323.778 kb on + strand, within AMB_RS06305at 1323.778 kb on + strand, within AMB_RS06305at 1323.779 kb on - strand, within AMB_RS06305at 1323.779 kb on - strand, within AMB_RS06305at 1323.779 kb on - strand, within AMB_RS06305at 1323.829 kb on + strandat 1323.829 kb on + strandat 1323.829 kb on + strandat 1323.830 kb on - strandat 1323.830 kb on - strandat 1324.011 kb on + strand, within AMB_RS06310at 1324.011 kb on + strand, within AMB_RS06310at 1324.012 kb on - strand, within AMB_RS06310

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_mag_3
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1,319,438 + AMB_RS06290 0.77 -1.2
1,319,439 - AMB_RS06290 0.77 -1.1
1,319,439 - AMB_RS06290 0.77 -1.4
1,319,713 - -0.1
1,319,769 + -0.5
1,319,888 + +0.1
1,319,889 - +0.1
1,319,924 + -0.0
1,319,924 + -0.3
1,319,947 + +0.1
1,319,948 - -0.9
1,319,963 + +0.6
1,320,073 - AMB_RS06295 0.10 -0.5
1,320,126 + AMB_RS06295 0.23 -0.5
1,320,126 + AMB_RS06295 0.23 -0.7
1,320,127 - AMB_RS06295 0.24 -1.2
1,320,127 - AMB_RS06295 0.24 -0.3
1,320,147 + AMB_RS06295 0.28 -2.1
1,320,147 + AMB_RS06295 0.28 -0.6
1,320,148 - AMB_RS06295 0.29 -1.3
1,320,148 - AMB_RS06295 0.29 -1.1
1,320,491 + -1.0
1,320,491 + -1.4
1,320,491 + -2.5
1,320,491 + -2.7
1,320,491 + -0.8
1,320,492 - -0.6
1,320,492 - -2.0
1,320,492 - -0.6
1,320,497 + -0.9
1,320,498 - -2.7
1,320,498 - -1.9
1,320,645 - +0.8
1,320,854 + AMB_RS06300 0.15 -1.0
1,320,855 - AMB_RS06300 0.15 -1.1
1,320,855 - AMB_RS06300 0.15 -1.3
1,320,855 - AMB_RS06300 0.15 -2.8
1,320,855 - AMB_RS06300 0.15 -1.9
1,320,855 - AMB_RS06300 0.15 -1.3
1,320,935 + AMB_RS06300 0.18 -1.4
1,320,936 - AMB_RS06300 0.18 -1.2
1,320,954 - AMB_RS06300 0.19 -0.4
1,320,977 + AMB_RS06300 0.20 -0.9
1,320,977 + AMB_RS06300 0.20 -0.1
1,320,978 - AMB_RS06300 0.20 -0.7
1,320,978 - AMB_RS06300 0.20 +0.1
1,321,010 + AMB_RS06300 0.21 -0.9
1,321,010 + AMB_RS06300 0.21 -3.2
1,321,010 + AMB_RS06300 0.21 -0.5
1,321,010 + AMB_RS06300 0.21 +1.1
1,321,010 + AMB_RS06300 0.21 +0.1
1,321,011 - AMB_RS06300 0.21 -1.3
1,321,011 - AMB_RS06300 0.21 +0.1
1,321,011 - AMB_RS06300 0.21 -1.6
1,321,011 - AMB_RS06300 0.21 -0.9
1,321,011 - AMB_RS06300 0.21 +1.7
1,321,034 - AMB_RS06300 0.22 -1.4
1,321,065 - AMB_RS06300 0.23 -0.5
1,321,065 - AMB_RS06300 0.23 -0.3
1,321,274 + AMB_RS06300 0.30 -1.9
1,321,274 + AMB_RS06300 0.30 -0.1
1,321,274 + AMB_RS06300 0.30 -0.7
1,321,299 - AMB_RS06300 0.31 -0.6
1,321,511 + AMB_RS06300 0.39 -0.5
1,321,511 + AMB_RS06300 0.39 -1.3
1,321,511 + AMB_RS06300 0.39 +0.1
1,321,511 + AMB_RS06300 0.39 -0.0
1,321,512 - AMB_RS06300 0.39 -0.9
1,321,512 - AMB_RS06300 0.39 +0.5
1,321,513 + AMB_RS06300 0.39 -1.1
1,321,514 - AMB_RS06300 0.39 -2.7
1,321,902 - AMB_RS06300 0.53 -0.9
1,321,902 - AMB_RS06300 0.53 -1.3
1,321,970 + AMB_RS06300 0.55 -1.5
1,321,970 + AMB_RS06300 0.55 +0.3
1,321,970 + AMB_RS06300 0.55 -0.4
1,321,970 + AMB_RS06300 0.55 -1.6
1,321,970 + AMB_RS06300 0.55 -1.5
1,321,970 + AMB_RS06300 0.55 +0.1
1,321,970 + AMB_RS06300 0.55 -1.1
1,321,970 + AMB_RS06300 0.55 -1.9
1,321,970 + AMB_RS06300 0.55 -1.4
1,321,970 + AMB_RS06300 0.55 -0.8
1,321,971 - AMB_RS06300 0.55 -1.5
1,321,971 - AMB_RS06300 0.55 -2.6
1,321,971 - AMB_RS06300 0.55 -0.9
1,321,971 - AMB_RS06300 0.55 +0.1
1,321,971 - AMB_RS06300 0.55 -0.9
1,321,971 - AMB_RS06300 0.55 -0.9
1,321,971 - AMB_RS06300 0.55 -2.5
1,321,971 - AMB_RS06300 0.55 -0.6
1,321,971 - AMB_RS06300 0.55 -0.5
1,321,971 - AMB_RS06300 0.55 -1.0
1,322,037 - AMB_RS06300 0.58 -1.9
1,322,125 + AMB_RS06300 0.61 -1.9
1,322,125 + AMB_RS06300 0.61 +0.5
1,322,125 + AMB_RS06300 0.61 +0.4
1,322,126 - AMB_RS06300 0.61 -1.1
1,322,126 - AMB_RS06300 0.61 -1.3
1,322,126 - AMB_RS06300 0.61 +0.1
1,322,126 - AMB_RS06300 0.61 -0.8
1,322,126 - AMB_RS06300 0.61 -0.6
1,322,126 - AMB_RS06300 0.61 -1.4
1,322,126 - AMB_RS06300 0.61 -1.4
1,322,126 - AMB_RS06300 0.61 -2.9
1,322,126 - AMB_RS06300 0.61 -2.5
1,322,348 + AMB_RS06300 0.69 -1.4
1,322,349 - AMB_RS06300 0.69 -1.9
1,322,603 + AMB_RS06300 0.78 -0.6
1,322,604 - AMB_RS06300 0.78 -1.0
1,322,604 - AMB_RS06300 0.78 -1.1
1,322,604 - AMB_RS06300 0.78 +0.2
1,322,604 - AMB_RS06300 0.78 -1.7
1,322,604 - AMB_RS06300 0.78 -0.9
1,322,615 + AMB_RS06300 0.79 +0.4
1,322,822 + AMB_RS06300 0.86 -0.5
1,322,823 - AMB_RS06300 0.86 -0.4
1,322,823 - AMB_RS06300 0.86 -1.2
1,323,305 - AMB_RS06305 0.16 +0.3
1,323,305 - AMB_RS06305 0.16 -0.7
1,323,460 + AMB_RS06305 0.39 -1.7
1,323,460 + AMB_RS06305 0.39 -1.4
1,323,460 + AMB_RS06305 0.39 -1.3
1,323,460 + AMB_RS06305 0.39 +0.4
1,323,484 + AMB_RS06305 0.43 -0.6
1,323,506 - AMB_RS06305 0.46 -0.3
1,323,517 + AMB_RS06305 0.48 -3.3
1,323,517 + AMB_RS06305 0.48 -2.1
1,323,518 - AMB_RS06305 0.48 -0.5
1,323,518 - AMB_RS06305 0.48 -0.6
1,323,518 - AMB_RS06305 0.48 -0.9
1,323,741 + AMB_RS06305 0.82 -1.3
1,323,778 + AMB_RS06305 0.88 -1.2
1,323,778 + AMB_RS06305 0.88 -0.4
1,323,779 - AMB_RS06305 0.88 -1.1
1,323,779 - AMB_RS06305 0.88 -1.0
1,323,779 - AMB_RS06305 0.88 -0.3
1,323,829 + -1.5
1,323,829 + -0.5
1,323,829 + -1.7
1,323,830 - -1.5
1,323,830 - -2.1
1,324,011 + AMB_RS06310 0.17 -0.8
1,324,011 + AMB_RS06310 0.17 -2.5
1,324,012 - AMB_RS06310 0.17 -1.2

Or see this region's nucleotide sequence