Strain Fitness in Magnetospirillum magneticum AMB-1

Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS04960

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	150_mag_3
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1,028,299	+			-3.2
1,028,299	+			-1.5
1,028,299	+			-0.4
1,028,299	+			-1.7
1,028,299	+			-3.2
1,028,299	+			-3.5
1,028,299	+			-4.4
1,028,299	+			-3.8
1,028,299	+			-1.9
1,028,300	-			-2.1
1,028,300	-			-2.1
1,028,300	-			-4.0
1,028,300	-			+0.4
1,028,300	-			-4.1
1,028,300	-			-4.2
1,028,362	+			-2.8
1,028,363	-			-5.2
1,028,363	-			-4.1
1,028,363	-			-2.7
1,028,363	-			-4.6
1,028,363	-			-3.7
1,028,363	-			-4.9
1,028,371	+			-4.8
1,028,371	+			-3.1
1,028,371	+			-3.2
1,028,372	-			-2.9
1,028,372	-			-2.6
1,028,372	-			-2.2
1,028,372	-			-1.9
1,028,372	-			-4.3
1,028,372	-			-6.0
1,028,439	+	AMB_RS04955	0.14	-2.5
1,028,439	+	AMB_RS04955	0.14	-4.3
1,028,439	+	AMB_RS04955	0.14	-3.4
1,028,439	+	AMB_RS04955	0.14	+0.1
1,028,439	+	AMB_RS04955	0.14	-5.0
1,028,439	+	AMB_RS04955	0.14	-1.4
1,028,439	+	AMB_RS04955	0.14	-3.2
1,028,439	+	AMB_RS04955	0.14	-2.6
1,028,439	+	AMB_RS04955	0.14	-2.6
1,028,439	+	AMB_RS04955	0.14	-3.7
1,028,439	+	AMB_RS04955	0.14	-3.8
1,028,439	+	AMB_RS04955	0.14	-2.9
1,028,439	+	AMB_RS04955	0.14	-2.6
1,028,439	+	AMB_RS04955	0.14	-1.9
1,028,440	-	AMB_RS04955	0.14	-3.7
1,028,440	-	AMB_RS04955	0.14	-2.5
1,028,440	-	AMB_RS04955	0.14	-3.3
1,028,440	-	AMB_RS04955	0.14	-1.9
1,028,440	-	AMB_RS04955	0.14	-2.1
1,028,440	-	AMB_RS04955	0.14	-2.5
1,028,440	-	AMB_RS04955	0.14	-2.2
1,028,440	-	AMB_RS04955	0.14	-3.8
1,028,592	+	AMB_RS04955	0.30	-0.2
1,028,592	+	AMB_RS04955	0.30	+0.1
1,028,593	-	AMB_RS04955	0.30	-2.8
1,028,593	-	AMB_RS04955	0.30	-2.8
1,028,703	+	AMB_RS04955	0.42	-2.6
1,028,703	+	AMB_RS04955	0.42	-5.7
1,028,703	+	AMB_RS04955	0.42	-4.3
1,028,703	+	AMB_RS04955	0.42	-3.6
1,028,703	+	AMB_RS04955	0.42	-3.4
1,028,703	+	AMB_RS04955	0.42	-3.9
1,028,703	+	AMB_RS04955	0.42	-3.1
1,028,703	+	AMB_RS04955	0.42	-1.5
1,028,703	+	AMB_RS04955	0.42	-2.9
1,028,703	+	AMB_RS04955	0.42	-3.3
1,028,703	+	AMB_RS04955	0.42	-3.9
1,028,703	+	AMB_RS04955	0.42	-2.5
1,028,703	+	AMB_RS04955	0.42	-3.7
1,028,703	+	AMB_RS04955	0.42	-3.5
1,028,703	+	AMB_RS04955	0.42	-4.9
1,028,703	+	AMB_RS04955	0.42	-4.2
1,028,703	+	AMB_RS04955	0.42	-4.3
1,028,703	+	AMB_RS04955	0.42	-3.6
1,028,703	+	AMB_RS04955	0.42	-3.5
1,028,703	+	AMB_RS04955	0.42	-3.1
1,028,704	-	AMB_RS04955	0.42	-3.5
1,028,704	-	AMB_RS04955	0.42	-1.6
1,028,704	-	AMB_RS04955	0.42	-5.3
1,028,704	-	AMB_RS04955	0.42	-4.2
1,028,704	-	AMB_RS04955	0.42	-3.1
1,028,704	-	AMB_RS04955	0.42	-4.6
1,028,704	-	AMB_RS04955	0.42	-4.2
1,028,704	-	AMB_RS04955	0.42	-1.9
1,028,704	-	AMB_RS04955	0.42	-4.0
1,028,704	-	AMB_RS04955	0.42	-3.2
1,028,704	-	AMB_RS04955	0.42	-4.0
1,028,704	-	AMB_RS04955	0.42	-2.1
1,028,704	-	AMB_RS04955	0.42	-2.9
1,028,704	-	AMB_RS04955	0.42	-3.2
1,028,704	-	AMB_RS04955	0.42	-2.7
1,028,704	-	AMB_RS04955	0.42	-5.7
1,028,704	-	AMB_RS04955	0.42	-4.2
1,028,704	-	AMB_RS04955	0.42	-3.3
1,028,704	-	AMB_RS04955	0.42	-1.9
1,028,704	-	AMB_RS04955	0.42	-2.8
1,028,709	+	AMB_RS04955	0.42	-4.7
1,028,710	-	AMB_RS04955	0.42	-0.9
1,028,710	-	AMB_RS04955	0.42	-3.1
1,028,826	+	AMB_RS04955	0.55	-2.1
1,028,826	+	AMB_RS04955	0.55	-4.3
1,028,826	+	AMB_RS04955	0.55	-2.2
1,028,826	+	AMB_RS04955	0.55	-3.8
1,028,826	+	AMB_RS04955	0.55	-3.3
1,028,826	+	AMB_RS04955	0.55	-4.0
1,028,827	-	AMB_RS04955	0.55	-4.9
1,028,827	-	AMB_RS04955	0.55	-2.9
1,028,827	-	AMB_RS04955	0.55	-4.4
1,028,916	+	AMB_RS04955	0.64	-0.9
1,028,916	+	AMB_RS04955	0.64	-3.2
1,028,917	-	AMB_RS04955	0.64	-2.3
1,028,937	-	AMB_RS04955	0.66	-3.2
1,029,025	-	AMB_RS04955	0.75	-3.2
1,029,025	-	AMB_RS04955	0.75	-3.1
1,029,077	+	AMB_RS04955	0.81	-3.6
1,029,078	-	AMB_RS04955	0.81	-2.7
1,029,078	-	AMB_RS04955	0.81	+0.7
1,029,078	-	AMB_RS04955	0.81	-3.7
1,029,078	-	AMB_RS04955	0.81	-2.5
1,029,078	-	AMB_RS04955	0.81	-3.7
1,029,078	-	AMB_RS04955	0.81	-2.4
1,029,078	-	AMB_RS04955	0.81	-2.7
1,029,188	+			-1.2
1,029,189	-			-2.8
1,029,225	+			+0.0
1,029,225	+			-0.5
1,029,226	-			-3.2
1,029,226	-			-3.0
1,029,254	+			-3.2
1,029,255	-			-4.1
1,029,258	+			-2.3
1,029,258	+			-3.8
1,029,258	+			-2.7
1,029,258	+			-4.2
1,029,259	-			-5.5
1,029,259	-			-4.1
1,029,259	-			-3.2
1,029,259	-			-1.5
1,029,259	-			+1.1
1,029,259	-			-1.2
1,029,312	+			-1.1
1,029,312	+			-3.2
1,029,312	+			-3.8
1,029,312	+			-2.0
1,029,312	+			-3.8
1,029,393	+	AMB_RS04960	0.10	-2.7
1,029,393	+	AMB_RS04960	0.10	-3.9
1,029,393	+	AMB_RS04960	0.10	-3.7
1,029,394	-	AMB_RS04960	0.10	-2.2
1,029,423	+	AMB_RS04960	0.12	-4.7
1,029,424	-	AMB_RS04960	0.12	-4.2
1,029,424	-	AMB_RS04960	0.12	-6.6
1,029,424	-	AMB_RS04960	0.12	+0.1
1,029,492	+	AMB_RS04960	0.18	-0.9
1,029,493	-	AMB_RS04960	0.18	-3.0
1,029,493	-	AMB_RS04960	0.18	-4.5
1,029,493	-	AMB_RS04960	0.18	-3.8
1,029,498	+	AMB_RS04960	0.18	-3.6
1,029,498	+	AMB_RS04960	0.18	-3.6
1,029,498	+	AMB_RS04960	0.18	-2.2
1,029,498	+	AMB_RS04960	0.18	-3.6
1,029,499	-	AMB_RS04960	0.18	-4.1
1,029,499	-	AMB_RS04960	0.18	-3.9
1,029,573	+	AMB_RS04960	0.24	-2.9
1,029,573	+	AMB_RS04960	0.24	-2.9
1,029,573	+	AMB_RS04960	0.24	-5.0
1,029,832	+	AMB_RS04960	0.43	-1.8
1,029,832	+	AMB_RS04960	0.43	-4.5
1,029,833	-	AMB_RS04960	0.44	-0.3
1,029,946	-	AMB_RS04960	0.52	-2.5
1,029,946	-	AMB_RS04960	0.52	-3.5
1,029,946	-	AMB_RS04960	0.52	-1.9
1,030,114	-	AMB_RS04960	0.65	-3.2
1,030,114	-	AMB_RS04960	0.65	-2.7
1,030,497	+			-3.4
1,030,497	+			-3.8
1,030,498	-			-3.8
1,030,498	-			-1.9
1,030,498	-			-2.5
1,030,551	+			-2.2
1,030,551	+			-3.4
1,030,551	+			-4.8
1,030,552	-			-2.8
1,030,552	-			-3.7
1,030,552	-			-3.9
1,030,553	+			+0.1
1,030,553	+			-3.4

Or see this region's nucleotide sequence