Experiment: 150_mag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS04395 and AMB_RS04400 are separated by 82 nucleotides AMB_RS04400 and AMB_RS04405 are separated by 53 nucleotides AMB_RS04405 and AMB_RS04410 are separated by 3 nucleotides
AMB_RS04395: AMB_RS04395 - hypothetical protein, at 922,489 to 922,833
_RS04395
AMB_RS04400: AMB_RS04400 - hypothetical protein, at 922,916 to 923,488
_RS04400
AMB_RS04405: AMB_RS04405 - potassium transporter Kup, at 923,542 to 925,464
_RS04405
AMB_RS04410: AMB_RS04410 - potassium transporter Kup, at 925,468 to 927,357
_RS04410
Position (kb) 923
924
925
926 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 922.777 kb on + strand, within AMB_RS04395 at 922.777 kb on + strand, within AMB_RS04395 at 922.777 kb on + strand, within AMB_RS04395 at 922.778 kb on - strand, within AMB_RS04395 at 922.778 kb on - strand, within AMB_RS04395 at 922.778 kb on - strand, within AMB_RS04395 at 922.778 kb on - strand, within AMB_RS04395 at 922.828 kb on - strand at 922.828 kb on - strand at 922.828 kb on - strand at 922.856 kb on + strand at 922.867 kb on - strand at 922.878 kb on - strand at 923.111 kb on + strand, within AMB_RS04400 at 923.138 kb on + strand, within AMB_RS04400 at 923.138 kb on + strand, within AMB_RS04400 at 923.139 kb on - strand, within AMB_RS04400 at 923.139 kb on - strand, within AMB_RS04400 at 923.139 kb on - strand, within AMB_RS04400 at 923.139 kb on - strand, within AMB_RS04400 at 923.168 kb on + strand, within AMB_RS04400 at 923.168 kb on + strand, within AMB_RS04400 at 923.168 kb on + strand, within AMB_RS04400 at 923.168 kb on + strand, within AMB_RS04400 at 923.168 kb on + strand, within AMB_RS04400 at 923.169 kb on - strand, within AMB_RS04400 at 923.169 kb on - strand, within AMB_RS04400 at 923.321 kb on + strand, within AMB_RS04400 at 923.322 kb on - strand, within AMB_RS04400 at 923.322 kb on - strand, within AMB_RS04400 at 923.537 kb on + strand at 923.538 kb on - strand at 923.538 kb on - strand at 923.538 kb on - strand at 923.538 kb on - strand at 923.538 kb on - strand at 923.543 kb on + strand at 923.543 kb on + strand at 923.543 kb on + strand at 924.466 kb on + strand, within AMB_RS04405 at 924.582 kb on - strand, within AMB_RS04405 at 925.330 kb on - strand at 925.470 kb on - strand at 925.470 kb on - strand at 925.470 kb on - strand at 925.470 kb on - strand at 925.470 kb on - strand at 925.653 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 150_mag_3 remove 922,777 + AMB_RS04395 0.83 +1.0 922,777 + AMB_RS04395 0.83 -0.1 922,777 + AMB_RS04395 0.83 -0.7 922,778 - AMB_RS04395 0.84 -0.4 922,778 - AMB_RS04395 0.84 -2.7 922,778 - AMB_RS04395 0.84 -1.2 922,778 - AMB_RS04395 0.84 -2.7 922,828 - -0.3 922,828 - -1.2 922,828 - +0.3 922,856 + -0.4 922,867 - -0.3 922,878 - +0.1 923,111 + AMB_RS04400 0.34 +0.2 923,138 + AMB_RS04400 0.39 +0.1 923,138 + AMB_RS04400 0.39 -0.4 923,139 - AMB_RS04400 0.39 -0.1 923,139 - AMB_RS04400 0.39 -0.2 923,139 - AMB_RS04400 0.39 -0.5 923,139 - AMB_RS04400 0.39 -0.9 923,168 + AMB_RS04400 0.44 -0.9 923,168 + AMB_RS04400 0.44 +0.8 923,168 + AMB_RS04400 0.44 -1.5 923,168 + AMB_RS04400 0.44 -2.4 923,168 + AMB_RS04400 0.44 -0.5 923,169 - AMB_RS04400 0.44 -0.4 923,169 - AMB_RS04400 0.44 +0.3 923,321 + AMB_RS04400 0.71 -2.8 923,322 - AMB_RS04400 0.71 +0.2 923,322 - AMB_RS04400 0.71 +0.1 923,537 + -0.3 923,538 - -0.4 923,538 - -0.8 923,538 - -0.3 923,538 - -0.6 923,538 - -0.3 923,543 + -0.2 923,543 + -1.2 923,543 + -0.5 924,466 + AMB_RS04405 0.48 +0.3 924,582 - AMB_RS04405 0.54 -0.9 925,330 - +0.5 925,470 - -0.2 925,470 - -0.2 925,470 - +0.9 925,470 - -0.1 925,470 - -0.3 925,653 - -0.6
Or see this region's nucleotide sequence