Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS04185

Experiment: 150_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS04180 and AMB_RS04185 are separated by 183 nucleotidesAMB_RS04185 and AMB_RS04190 are separated by 254 nucleotides AMB_RS04180: AMB_RS04180 - circularly permuted type 2 ATP-grasp protein, at 875,300 to 876,775 _RS04180 AMB_RS04185: AMB_RS04185 - IMP dehydrogenase, at 876,959 to 880,285 _RS04185 AMB_RS04190: AMB_RS04190 - hypothetical protein, at 880,540 to 882,999 _RS04190 Position (kb) 876 877 878 879 880 881Strain fitness (log2 ratio) -3 -2 -1 0 1at 876.051 kb on + strand, within AMB_RS04180at 876.051 kb on + strand, within AMB_RS04180at 876.052 kb on - strand, within AMB_RS04180at 876.052 kb on - strand, within AMB_RS04180at 876.052 kb on - strand, within AMB_RS04180at 876.052 kb on - strand, within AMB_RS04180at 876.138 kb on + strand, within AMB_RS04180at 876.138 kb on + strand, within AMB_RS04180at 876.138 kb on + strand, within AMB_RS04180at 876.219 kb on + strand, within AMB_RS04180at 876.219 kb on + strand, within AMB_RS04180at 876.219 kb on + strand, within AMB_RS04180at 876.219 kb on + strand, within AMB_RS04180at 876.220 kb on - strand, within AMB_RS04180at 876.220 kb on - strand, within AMB_RS04180at 876.220 kb on - strand, within AMB_RS04180at 876.220 kb on - strand, within AMB_RS04180at 876.220 kb on - strand, within AMB_RS04180at 876.312 kb on + strand, within AMB_RS04180at 876.312 kb on + strand, within AMB_RS04180at 876.312 kb on + strand, within AMB_RS04180at 876.312 kb on + strand, within AMB_RS04180at 876.313 kb on - strand, within AMB_RS04180at 876.313 kb on - strand, within AMB_RS04180at 876.420 kb on + strand, within AMB_RS04180at 876.420 kb on + strand, within AMB_RS04180at 876.421 kb on - strand, within AMB_RS04180at 876.558 kb on + strand, within AMB_RS04180at 876.559 kb on - strand, within AMB_RS04180at 876.559 kb on - strand, within AMB_RS04180at 876.559 kb on - strand, within AMB_RS04180at 876.578 kb on + strand, within AMB_RS04180at 876.578 kb on + strand, within AMB_RS04180at 876.579 kb on - strand, within AMB_RS04180at 876.579 kb on - strand, within AMB_RS04180at 876.579 kb on - strand, within AMB_RS04180at 876.726 kb on + strandat 876.726 kb on + strandat 876.775 kb on + strandat 876.775 kb on + strandat 876.776 kb on - strandat 876.807 kb on - strandat 876.914 kb on + strandat 876.914 kb on + strandat 876.919 kb on + strandat 876.985 kb on + strandat 876.995 kb on + strandat 876.996 kb on - strandat 876.997 kb on + strandat 876.997 kb on + strandat 877.079 kb on + strandat 877.079 kb on + strandat 877.274 kb on + strandat 877.347 kb on - strand, within AMB_RS04185at 877.434 kb on - strand, within AMB_RS04185at 877.434 kb on - strand, within AMB_RS04185at 877.665 kb on - strand, within AMB_RS04185at 877.729 kb on + strand, within AMB_RS04185at 877.729 kb on + strand, within AMB_RS04185at 877.730 kb on - strand, within AMB_RS04185at 877.771 kb on + strand, within AMB_RS04185at 878.111 kb on + strand, within AMB_RS04185at 878.318 kb on + strand, within AMB_RS04185at 878.609 kb on + strand, within AMB_RS04185at 879.239 kb on + strand, within AMB_RS04185at 879.422 kb on - strand, within AMB_RS04185at 879.590 kb on + strand, within AMB_RS04185at 879.590 kb on + strand, within AMB_RS04185at 879.590 kb on + strand, within AMB_RS04185at 879.590 kb on + strand, within AMB_RS04185at 879.590 kb on + strand, within AMB_RS04185at 879.592 kb on + strand, within AMB_RS04185at 879.592 kb on + strand, within AMB_RS04185at 879.857 kb on + strand, within AMB_RS04185at 879.857 kb on + strand, within AMB_RS04185at 880.046 kb on - strandat 880.106 kb on + strandat 880.106 kb on + strandat 880.106 kb on + strandat 880.106 kb on + strandat 880.106 kb on + strandat 880.107 kb on - strandat 880.136 kb on + strandat 880.160 kb on + strandat 880.160 kb on + strandat 880.160 kb on + strandat 880.161 kb on - strandat 880.261 kb on + strandat 880.279 kb on - strandat 880.283 kb on + strandat 880.284 kb on - strandat 880.376 kb on + strandat 880.376 kb on + strandat 880.409 kb on + strandat 880.594 kb on - strandat 880.682 kb on - strandat 881.200 kb on + strand, within AMB_RS04190at 881.200 kb on + strand, within AMB_RS04190at 881.284 kb on + strand, within AMB_RS04190

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_mag_3
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876,051 + AMB_RS04180 0.51 +0.1
876,051 + AMB_RS04180 0.51 -1.6
876,052 - AMB_RS04180 0.51 -0.1
876,052 - AMB_RS04180 0.51 -2.3
876,052 - AMB_RS04180 0.51 -0.2
876,052 - AMB_RS04180 0.51 -1.3
876,138 + AMB_RS04180 0.57 -0.4
876,138 + AMB_RS04180 0.57 +0.1
876,138 + AMB_RS04180 0.57 -0.3
876,219 + AMB_RS04180 0.62 -0.4
876,219 + AMB_RS04180 0.62 -0.8
876,219 + AMB_RS04180 0.62 -0.0
876,219 + AMB_RS04180 0.62 -0.3
876,220 - AMB_RS04180 0.62 -0.6
876,220 - AMB_RS04180 0.62 +0.3
876,220 - AMB_RS04180 0.62 +0.3
876,220 - AMB_RS04180 0.62 -1.0
876,220 - AMB_RS04180 0.62 -1.0
876,312 + AMB_RS04180 0.69 -1.6
876,312 + AMB_RS04180 0.69 -0.4
876,312 + AMB_RS04180 0.69 -0.1
876,312 + AMB_RS04180 0.69 -1.0
876,313 - AMB_RS04180 0.69 -0.2
876,313 - AMB_RS04180 0.69 -0.5
876,420 + AMB_RS04180 0.76 -1.6
876,420 + AMB_RS04180 0.76 -2.1
876,421 - AMB_RS04180 0.76 +0.2
876,558 + AMB_RS04180 0.85 -0.1
876,559 - AMB_RS04180 0.85 -0.2
876,559 - AMB_RS04180 0.85 -0.3
876,559 - AMB_RS04180 0.85 -0.6
876,578 + AMB_RS04180 0.87 -0.3
876,578 + AMB_RS04180 0.87 -0.9
876,579 - AMB_RS04180 0.87 +0.6
876,579 - AMB_RS04180 0.87 -0.7
876,579 - AMB_RS04180 0.87 -0.4
876,726 + -1.0
876,726 + -0.3
876,775 + +0.4
876,775 + +0.1
876,776 - +0.8
876,807 - -0.3
876,914 + -0.1
876,914 + -0.6
876,919 + -0.3
876,985 + -0.4
876,995 + +0.3
876,996 - -3.4
876,997 + +1.4
876,997 + -1.7
877,079 + -0.5
877,079 + -1.9
877,274 + -0.3
877,347 - AMB_RS04185 0.12 -0.2
877,434 - AMB_RS04185 0.14 -2.5
877,434 - AMB_RS04185 0.14 -1.5
877,665 - AMB_RS04185 0.21 -1.3
877,729 + AMB_RS04185 0.23 -0.1
877,729 + AMB_RS04185 0.23 -2.2
877,730 - AMB_RS04185 0.23 -1.2
877,771 + AMB_RS04185 0.24 -1.2
878,111 + AMB_RS04185 0.35 -0.8
878,318 + AMB_RS04185 0.41 -0.6
878,609 + AMB_RS04185 0.50 +0.1
879,239 + AMB_RS04185 0.69 -0.4
879,422 - AMB_RS04185 0.74 -0.8
879,590 + AMB_RS04185 0.79 -1.7
879,590 + AMB_RS04185 0.79 -0.4
879,590 + AMB_RS04185 0.79 -0.3
879,590 + AMB_RS04185 0.79 +0.1
879,590 + AMB_RS04185 0.79 +0.4
879,592 + AMB_RS04185 0.79 -0.9
879,592 + AMB_RS04185 0.79 +0.1
879,857 + AMB_RS04185 0.87 +0.1
879,857 + AMB_RS04185 0.87 -0.9
880,046 - -1.1
880,106 + -0.6
880,106 + -0.5
880,106 + +0.1
880,106 + -0.3
880,106 + -1.2
880,107 - +0.4
880,136 + -1.2
880,160 + +0.1
880,160 + +1.1
880,160 + -0.4
880,161 - -1.1
880,261 + -2.4
880,279 - +0.4
880,283 + -0.1
880,284 - -0.3
880,376 + +0.1
880,376 + -0.0
880,409 + -0.9
880,594 - -1.2
880,682 - -0.5
881,200 + AMB_RS04190 0.27 -2.1
881,200 + AMB_RS04190 0.27 -1.9
881,284 + AMB_RS04190 0.30 -0.6

Or see this region's nucleotide sequence