Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS04120

Experiment: 150_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS04115 and AMB_RS04120 are separated by 5 nucleotidesAMB_RS04120 and AMB_RS04125 overlap by 4 nucleotidesAMB_RS04125 and AMB_RS04130 are separated by 18 nucleotides AMB_RS04115: AMB_RS04115 - 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase, at 862,501 to 863,958 _RS04115 AMB_RS04120: AMB_RS04120 - 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase, at 863,964 to 864,728 _RS04120 AMB_RS04125: AMB_RS04125 - 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase, at 864,725 to 865,501 _RS04125 AMB_RS04130: AMB_RS04130 - TRAP transporter large permease, at 865,520 to 866,848 _RS04130 Position (kb) 863 864 865Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 862.971 kb on + strand, within AMB_RS04115at 862.973 kb on + strand, within AMB_RS04115at 862.973 kb on + strand, within AMB_RS04115at 862.973 kb on + strand, within AMB_RS04115at 862.973 kb on + strand, within AMB_RS04115at 862.973 kb on + strand, within AMB_RS04115at 862.973 kb on + strand, within AMB_RS04115at 862.974 kb on - strand, within AMB_RS04115at 862.974 kb on - strand, within AMB_RS04115at 862.974 kb on - strand, within AMB_RS04115at 862.974 kb on - strand, within AMB_RS04115at 862.974 kb on - strand, within AMB_RS04115at 862.974 kb on - strand, within AMB_RS04115at 863.096 kb on + strand, within AMB_RS04115at 863.096 kb on + strand, within AMB_RS04115at 863.097 kb on - strand, within AMB_RS04115at 863.097 kb on - strand, within AMB_RS04115at 863.097 kb on - strand, within AMB_RS04115at 863.246 kb on + strand, within AMB_RS04115at 863.247 kb on - strand, within AMB_RS04115at 863.247 kb on - strand, within AMB_RS04115at 863.247 kb on - strand, within AMB_RS04115at 863.247 kb on - strand, within AMB_RS04115at 863.247 kb on - strand, within AMB_RS04115at 863.247 kb on - strand, within AMB_RS04115at 863.247 kb on - strand, within AMB_RS04115at 863.469 kb on + strand, within AMB_RS04115at 863.564 kb on + strand, within AMB_RS04115at 863.564 kb on + strand, within AMB_RS04115at 863.573 kb on + strand, within AMB_RS04115at 863.573 kb on + strand, within AMB_RS04115at 863.573 kb on + strand, within AMB_RS04115at 863.573 kb on + strand, within AMB_RS04115at 863.573 kb on + strand, within AMB_RS04115at 863.574 kb on - strand, within AMB_RS04115at 863.574 kb on - strand, within AMB_RS04115at 863.597 kb on + strand, within AMB_RS04115at 863.597 kb on + strand, within AMB_RS04115at 863.598 kb on - strand, within AMB_RS04115at 863.639 kb on + strand, within AMB_RS04115at 863.640 kb on - strand, within AMB_RS04115at 863.980 kb on + strandat 863.980 kb on + strandat 863.981 kb on - strandat 863.981 kb on - strandat 864.130 kb on + strand, within AMB_RS04120at 864.130 kb on + strand, within AMB_RS04120at 864.130 kb on + strand, within AMB_RS04120at 864.130 kb on + strand, within AMB_RS04120at 864.130 kb on + strand, within AMB_RS04120at 864.130 kb on + strand, within AMB_RS04120at 864.131 kb on + strand, within AMB_RS04120at 864.131 kb on - strand, within AMB_RS04120at 864.131 kb on - strand, within AMB_RS04120at 864.234 kb on + strand, within AMB_RS04120at 864.235 kb on - strand, within AMB_RS04120at 864.310 kb on + strand, within AMB_RS04120at 864.313 kb on + strand, within AMB_RS04120at 864.313 kb on + strand, within AMB_RS04120at 864.313 kb on + strand, within AMB_RS04120at 864.314 kb on - strand, within AMB_RS04120at 864.314 kb on - strand, within AMB_RS04120at 864.314 kb on - strand, within AMB_RS04120at 864.314 kb on - strand, within AMB_RS04120at 864.341 kb on - strand, within AMB_RS04120at 864.341 kb on - strand, within AMB_RS04120at 864.358 kb on + strand, within AMB_RS04120at 864.358 kb on + strand, within AMB_RS04120at 864.358 kb on + strand, within AMB_RS04120at 864.359 kb on - strand, within AMB_RS04120at 864.359 kb on - strand, within AMB_RS04120at 864.376 kb on + strand, within AMB_RS04120at 864.376 kb on + strand, within AMB_RS04120at 864.376 kb on + strand, within AMB_RS04120at 864.376 kb on + strand, within AMB_RS04120at 864.376 kb on + strand, within AMB_RS04120at 864.377 kb on - strand, within AMB_RS04120at 864.440 kb on - strand, within AMB_RS04120at 864.440 kb on - strand, within AMB_RS04120at 864.440 kb on - strand, within AMB_RS04120at 864.568 kb on + strand, within AMB_RS04120at 864.568 kb on + strand, within AMB_RS04120at 864.568 kb on + strand, within AMB_RS04120at 864.569 kb on - strand, within AMB_RS04120at 864.569 kb on - strand, within AMB_RS04120at 864.569 kb on - strand, within AMB_RS04120at 864.569 kb on - strand, within AMB_RS04120at 864.705 kb on - strandat 864.706 kb on + strandat 864.707 kb on - strandat 864.906 kb on + strand, within AMB_RS04125at 864.907 kb on - strand, within AMB_RS04125at 864.951 kb on + strand, within AMB_RS04125at 864.951 kb on + strand, within AMB_RS04125at 864.951 kb on + strand, within AMB_RS04125at 864.951 kb on + strand, within AMB_RS04125at 864.951 kb on + strand, within AMB_RS04125at 864.952 kb on - strand, within AMB_RS04125at 864.952 kb on - strand, within AMB_RS04125at 864.952 kb on - strand, within AMB_RS04125at 864.952 kb on - strand, within AMB_RS04125at 864.952 kb on - strand, within AMB_RS04125at 865.063 kb on - strand, within AMB_RS04125at 865.260 kb on + strand, within AMB_RS04125at 865.261 kb on - strand, within AMB_RS04125at 865.261 kb on - strand, within AMB_RS04125at 865.261 kb on - strand, within AMB_RS04125at 865.290 kb on + strand, within AMB_RS04125at 865.290 kb on + strand, within AMB_RS04125at 865.290 kb on + strand, within AMB_RS04125at 865.290 kb on + strand, within AMB_RS04125at 865.290 kb on + strand, within AMB_RS04125at 865.356 kb on + strand, within AMB_RS04125at 865.357 kb on - strand, within AMB_RS04125at 865.357 kb on - strand, within AMB_RS04125at 865.665 kb on + strand, within AMB_RS04130at 865.665 kb on + strand, within AMB_RS04130at 865.666 kb on - strand, within AMB_RS04130at 865.666 kb on - strand, within AMB_RS04130at 865.666 kb on - strand, within AMB_RS04130at 865.666 kb on - strand, within AMB_RS04130

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_mag_3
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862,971 + AMB_RS04115 0.32 -0.6
862,973 + AMB_RS04115 0.32 -0.5
862,973 + AMB_RS04115 0.32 -0.5
862,973 + AMB_RS04115 0.32 +0.1
862,973 + AMB_RS04115 0.32 +1.7
862,973 + AMB_RS04115 0.32 -1.5
862,973 + AMB_RS04115 0.32 -0.2
862,974 - AMB_RS04115 0.32 -1.5
862,974 - AMB_RS04115 0.32 -0.9
862,974 - AMB_RS04115 0.32 +0.2
862,974 - AMB_RS04115 0.32 +0.4
862,974 - AMB_RS04115 0.32 +0.1
862,974 - AMB_RS04115 0.32 -0.8
863,096 + AMB_RS04115 0.41 +0.1
863,096 + AMB_RS04115 0.41 -1.3
863,097 - AMB_RS04115 0.41 -0.4
863,097 - AMB_RS04115 0.41 -0.0
863,097 - AMB_RS04115 0.41 -0.1
863,246 + AMB_RS04115 0.51 -0.1
863,247 - AMB_RS04115 0.51 +0.4
863,247 - AMB_RS04115 0.51 +2.4
863,247 - AMB_RS04115 0.51 +0.5
863,247 - AMB_RS04115 0.51 -1.0
863,247 - AMB_RS04115 0.51 -2.2
863,247 - AMB_RS04115 0.51 -1.9
863,247 - AMB_RS04115 0.51 -3.4
863,469 + AMB_RS04115 0.66 -1.3
863,564 + AMB_RS04115 0.73 -1.3
863,564 + AMB_RS04115 0.73 -0.7
863,573 + AMB_RS04115 0.74 -1.1
863,573 + AMB_RS04115 0.74 +0.1
863,573 + AMB_RS04115 0.74 -2.4
863,573 + AMB_RS04115 0.74 -0.3
863,573 + AMB_RS04115 0.74 +1.1
863,574 - AMB_RS04115 0.74 -1.1
863,574 - AMB_RS04115 0.74 +0.4
863,597 + AMB_RS04115 0.75 +0.2
863,597 + AMB_RS04115 0.75 -1.9
863,598 - AMB_RS04115 0.75 -0.2
863,639 + AMB_RS04115 0.78 +0.0
863,640 - AMB_RS04115 0.78 +0.7
863,980 + -0.5
863,980 + -0.1
863,981 - -0.6
863,981 - +0.4
864,130 + AMB_RS04120 0.22 +0.3
864,130 + AMB_RS04120 0.22 +0.4
864,130 + AMB_RS04120 0.22 -1.9
864,130 + AMB_RS04120 0.22 +0.6
864,130 + AMB_RS04120 0.22 -0.3
864,130 + AMB_RS04120 0.22 +0.4
864,131 + AMB_RS04120 0.22 +0.2
864,131 - AMB_RS04120 0.22 +0.1
864,131 - AMB_RS04120 0.22 -0.4
864,234 + AMB_RS04120 0.35 -0.0
864,235 - AMB_RS04120 0.35 +0.1
864,310 + AMB_RS04120 0.45 -0.2
864,313 + AMB_RS04120 0.46 -0.4
864,313 + AMB_RS04120 0.46 -1.2
864,313 + AMB_RS04120 0.46 -2.0
864,314 - AMB_RS04120 0.46 -1.6
864,314 - AMB_RS04120 0.46 -0.9
864,314 - AMB_RS04120 0.46 -0.5
864,314 - AMB_RS04120 0.46 -0.0
864,341 - AMB_RS04120 0.49 -0.0
864,341 - AMB_RS04120 0.49 +0.1
864,358 + AMB_RS04120 0.52 -0.3
864,358 + AMB_RS04120 0.52 +0.6
864,358 + AMB_RS04120 0.52 +0.4
864,359 - AMB_RS04120 0.52 -0.2
864,359 - AMB_RS04120 0.52 +0.1
864,376 + AMB_RS04120 0.54 -0.2
864,376 + AMB_RS04120 0.54 -0.9
864,376 + AMB_RS04120 0.54 -0.7
864,376 + AMB_RS04120 0.54 +0.4
864,376 + AMB_RS04120 0.54 -0.5
864,377 - AMB_RS04120 0.54 -0.6
864,440 - AMB_RS04120 0.62 -0.9
864,440 - AMB_RS04120 0.62 +0.0
864,440 - AMB_RS04120 0.62 -1.7
864,568 + AMB_RS04120 0.79 -3.3
864,568 + AMB_RS04120 0.79 -0.4
864,568 + AMB_RS04120 0.79 +0.1
864,569 - AMB_RS04120 0.79 -0.2
864,569 - AMB_RS04120 0.79 -1.3
864,569 - AMB_RS04120 0.79 -0.2
864,569 - AMB_RS04120 0.79 -0.1
864,705 - -0.3
864,706 + +0.9
864,707 - -0.3
864,906 + AMB_RS04125 0.23 -2.5
864,907 - AMB_RS04125 0.23 -0.4
864,951 + AMB_RS04125 0.29 -0.1
864,951 + AMB_RS04125 0.29 -0.5
864,951 + AMB_RS04125 0.29 -0.9
864,951 + AMB_RS04125 0.29 -1.0
864,951 + AMB_RS04125 0.29 -2.0
864,952 - AMB_RS04125 0.29 -0.1
864,952 - AMB_RS04125 0.29 -0.5
864,952 - AMB_RS04125 0.29 +0.4
864,952 - AMB_RS04125 0.29 -0.2
864,952 - AMB_RS04125 0.29 +0.3
865,063 - AMB_RS04125 0.44 -0.2
865,260 + AMB_RS04125 0.69 +1.1
865,261 - AMB_RS04125 0.69 +1.1
865,261 - AMB_RS04125 0.69 -0.3
865,261 - AMB_RS04125 0.69 -3.1
865,290 + AMB_RS04125 0.73 +0.4
865,290 + AMB_RS04125 0.73 -0.9
865,290 + AMB_RS04125 0.73 +0.2
865,290 + AMB_RS04125 0.73 -2.7
865,290 + AMB_RS04125 0.73 +0.2
865,356 + AMB_RS04125 0.81 +0.5
865,357 - AMB_RS04125 0.81 +1.1
865,357 - AMB_RS04125 0.81 -0.1
865,665 + AMB_RS04130 0.11 -0.1
865,665 + AMB_RS04130 0.11 -0.2
865,666 - AMB_RS04130 0.11 +0.0
865,666 - AMB_RS04130 0.11 -0.0
865,666 - AMB_RS04130 0.11 -0.6
865,666 - AMB_RS04130 0.11 +1.2

Or see this region's nucleotide sequence