Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS03980

Experiment: 150_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS03975 and AMB_RS03980 are separated by 90 nucleotidesAMB_RS03980 and AMB_RS03985 are separated by 65 nucleotides AMB_RS03975: AMB_RS03975 - hypothetical protein, at 833,410 to 834,744 _RS03975 AMB_RS03980: AMB_RS03980 - serine/threonine protein phosphatase, at 834,835 to 835,623 _RS03980 AMB_RS03985: AMB_RS03985 - bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase, at 835,689 to 837,155 _RS03985 Position (kb) 834 835 836Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 833.841 kb on - strand, within AMB_RS03975at 833.841 kb on - strand, within AMB_RS03975at 833.841 kb on - strand, within AMB_RS03975at 834.301 kb on + strand, within AMB_RS03975at 834.357 kb on - strand, within AMB_RS03975at 834.375 kb on - strand, within AMB_RS03975at 834.377 kb on + strand, within AMB_RS03975at 834.377 kb on + strand, within AMB_RS03975at 834.377 kb on + strand, within AMB_RS03975at 834.377 kb on + strand, within AMB_RS03975at 834.377 kb on + strand, within AMB_RS03975at 834.378 kb on - strand, within AMB_RS03975at 834.378 kb on - strand, within AMB_RS03975at 834.378 kb on - strand, within AMB_RS03975at 834.378 kb on - strand, within AMB_RS03975at 834.416 kb on + strand, within AMB_RS03975at 834.416 kb on + strand, within AMB_RS03975at 834.417 kb on - strand, within AMB_RS03975at 834.417 kb on - strand, within AMB_RS03975at 834.455 kb on + strand, within AMB_RS03975at 834.456 kb on - strand, within AMB_RS03975at 834.456 kb on - strand, within AMB_RS03975at 834.456 kb on - strand, within AMB_RS03975at 834.456 kb on - strand, within AMB_RS03975at 834.683 kb on + strandat 834.684 kb on - strandat 834.684 kb on - strandat 834.684 kb on - strandat 834.813 kb on - strandat 834.813 kb on - strandat 834.813 kb on - strandat 834.813 kb on - strandat 834.813 kb on - strandat 834.813 kb on - strandat 834.814 kb on + strandat 834.814 kb on + strandat 834.814 kb on + strandat 834.814 kb on + strandat 834.814 kb on + strandat 834.814 kb on + strandat 834.814 kb on + strandat 834.814 kb on + strandat 834.814 kb on + strandat 834.814 kb on + strandat 834.814 kb on + strandat 834.814 kb on + strandat 834.814 kb on + strandat 834.815 kb on - strandat 834.815 kb on - strandat 834.815 kb on - strandat 834.815 kb on - strandat 834.815 kb on - strandat 834.815 kb on - strandat 834.815 kb on - strandat 834.815 kb on - strandat 834.815 kb on - strandat 834.815 kb on - strandat 834.815 kb on - strandat 834.815 kb on - strandat 834.816 kb on + strandat 834.816 kb on + strandat 834.816 kb on + strandat 834.816 kb on + strandat 834.816 kb on + strandat 834.816 kb on + strandat 834.817 kb on - strandat 834.817 kb on - strandat 834.817 kb on - strandat 834.846 kb on + strandat 834.882 kb on - strandat 834.882 kb on - strandat 834.931 kb on + strand, within AMB_RS03980at 834.931 kb on + strand, within AMB_RS03980at 834.931 kb on + strand, within AMB_RS03980at 834.932 kb on - strand, within AMB_RS03980at 834.932 kb on - strand, within AMB_RS03980at 835.240 kb on + strand, within AMB_RS03980at 835.240 kb on + strand, within AMB_RS03980at 835.240 kb on + strand, within AMB_RS03980at 835.240 kb on + strand, within AMB_RS03980at 835.240 kb on + strand, within AMB_RS03980at 835.240 kb on + strand, within AMB_RS03980at 835.240 kb on + strand, within AMB_RS03980at 835.240 kb on + strand, within AMB_RS03980at 835.241 kb on - strand, within AMB_RS03980at 835.241 kb on - strand, within AMB_RS03980at 835.241 kb on - strand, within AMB_RS03980at 835.241 kb on - strand, within AMB_RS03980at 835.241 kb on - strand, within AMB_RS03980at 835.241 kb on - strand, within AMB_RS03980at 835.241 kb on - strand, within AMB_RS03980at 835.276 kb on + strand, within AMB_RS03980at 835.276 kb on + strand, within AMB_RS03980at 835.369 kb on + strand, within AMB_RS03980at 835.369 kb on + strand, within AMB_RS03980at 835.370 kb on - strand, within AMB_RS03980at 835.370 kb on - strand, within AMB_RS03980at 835.370 kb on - strand, within AMB_RS03980at 835.617 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_mag_3
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833,841 - AMB_RS03975 0.32 -0.3
833,841 - AMB_RS03975 0.32 +0.4
833,841 - AMB_RS03975 0.32 +0.0
834,301 + AMB_RS03975 0.67 -1.5
834,357 - AMB_RS03975 0.71 -0.4
834,375 - AMB_RS03975 0.72 -0.0
834,377 + AMB_RS03975 0.72 +0.5
834,377 + AMB_RS03975 0.72 -0.6
834,377 + AMB_RS03975 0.72 -0.1
834,377 + AMB_RS03975 0.72 +0.3
834,377 + AMB_RS03975 0.72 -0.1
834,378 - AMB_RS03975 0.73 +0.3
834,378 - AMB_RS03975 0.73 +0.8
834,378 - AMB_RS03975 0.73 -0.3
834,378 - AMB_RS03975 0.73 +0.4
834,416 + AMB_RS03975 0.75 +0.4
834,416 + AMB_RS03975 0.75 +0.4
834,417 - AMB_RS03975 0.75 -0.3
834,417 - AMB_RS03975 0.75 +0.2
834,455 + AMB_RS03975 0.78 +0.0
834,456 - AMB_RS03975 0.78 -0.4
834,456 - AMB_RS03975 0.78 +0.9
834,456 - AMB_RS03975 0.78 -0.1
834,456 - AMB_RS03975 0.78 +0.3
834,683 + -0.6
834,684 - +1.9
834,684 - -0.1
834,684 - -0.5
834,813 - -0.1
834,813 - -1.0
834,813 - -0.3
834,813 - -0.7
834,813 - -0.6
834,813 - -0.0
834,814 + -0.4
834,814 + -0.6
834,814 + -0.8
834,814 + -0.6
834,814 + -0.4
834,814 + +0.4
834,814 + -0.6
834,814 + +1.0
834,814 + +0.4
834,814 + +0.1
834,814 + -1.4
834,814 + -0.3
834,814 + -0.5
834,815 - +0.9
834,815 - -0.1
834,815 - -0.1
834,815 - +0.4
834,815 - -2.0
834,815 - -0.8
834,815 - -0.4
834,815 - +0.3
834,815 - +1.7
834,815 - -0.3
834,815 - -0.4
834,815 - -0.6
834,816 + -0.4
834,816 + -0.2
834,816 + -0.9
834,816 + -0.8
834,816 + -0.1
834,816 + -2.8
834,817 - -0.1
834,817 - +0.8
834,817 - -2.2
834,846 + -0.1
834,882 - +0.2
834,882 - -0.6
834,931 + AMB_RS03980 0.12 -0.7
834,931 + AMB_RS03980 0.12 -0.7
834,931 + AMB_RS03980 0.12 +0.4
834,932 - AMB_RS03980 0.12 +0.0
834,932 - AMB_RS03980 0.12 -0.3
835,240 + AMB_RS03980 0.51 +0.0
835,240 + AMB_RS03980 0.51 -1.1
835,240 + AMB_RS03980 0.51 -0.7
835,240 + AMB_RS03980 0.51 +0.2
835,240 + AMB_RS03980 0.51 -0.9
835,240 + AMB_RS03980 0.51 -0.2
835,240 + AMB_RS03980 0.51 -0.9
835,240 + AMB_RS03980 0.51 -0.1
835,241 - AMB_RS03980 0.51 +0.9
835,241 - AMB_RS03980 0.51 +1.1
835,241 - AMB_RS03980 0.51 +0.1
835,241 - AMB_RS03980 0.51 +0.9
835,241 - AMB_RS03980 0.51 -2.8
835,241 - AMB_RS03980 0.51 -0.2
835,241 - AMB_RS03980 0.51 +0.0
835,276 + AMB_RS03980 0.56 +0.1
835,276 + AMB_RS03980 0.56 -0.0
835,369 + AMB_RS03980 0.68 -0.2
835,369 + AMB_RS03980 0.68 -0.4
835,370 - AMB_RS03980 0.68 +0.3
835,370 - AMB_RS03980 0.68 +0.6
835,370 - AMB_RS03980 0.68 -0.4
835,617 + -0.3

Or see this region's nucleotide sequence