Experiment: 150_mag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS03890 and AMB_RS03895 are separated by 92 nucleotides AMB_RS03895 and AMB_RS03900 are separated by 128 nucleotides AMB_RS03900 and AMB_RS03905 are separated by 102 nucleotides
AMB_RS03890: AMB_RS03890 - GGDEF domain-containing protein, at 816,254 to 817,312
_RS03890
AMB_RS03895: AMB_RS03895 - response regulator, at 817,405 to 818,133
_RS03895
AMB_RS03900: AMB_RS03900 - hypothetical protein, at 818,262 to 818,972
_RS03900
AMB_RS03905: AMB_RS03905 - ribonuclease H, at 819,075 to 819,539
_RS03905
Position (kb) 817
818
819 Strain fitness (log2 ratio) -2
-1
0
1
2 at 816.461 kb on + strand, within AMB_RS03890 at 816.462 kb on - strand, within AMB_RS03890 at 816.552 kb on - strand, within AMB_RS03890 at 816.552 kb on - strand, within AMB_RS03890 at 816.552 kb on - strand, within AMB_RS03890 at 816.584 kb on + strand, within AMB_RS03890 at 816.585 kb on - strand, within AMB_RS03890 at 816.929 kb on + strand, within AMB_RS03890 at 816.929 kb on + strand, within AMB_RS03890 at 816.930 kb on - strand, within AMB_RS03890 at 816.930 kb on - strand, within AMB_RS03890 at 816.930 kb on - strand, within AMB_RS03890 at 817.232 kb on + strand at 817.232 kb on + strand at 817.232 kb on + strand at 817.232 kb on + strand at 817.232 kb on + strand at 817.232 kb on + strand at 817.232 kb on + strand at 817.233 kb on - strand at 817.233 kb on - strand at 817.233 kb on - strand at 817.233 kb on - strand at 817.233 kb on - strand at 817.310 kb on + strand at 817.310 kb on + strand at 817.311 kb on - strand at 817.346 kb on - strand at 817.346 kb on - strand at 817.346 kb on - strand at 817.346 kb on - strand at 817.348 kb on + strand at 817.348 kb on + strand at 817.348 kb on + strand at 817.348 kb on + strand at 817.349 kb on - strand at 817.349 kb on - strand at 817.394 kb on + strand at 817.394 kb on + strand at 817.395 kb on - strand at 817.395 kb on - strand at 817.395 kb on - strand at 817.395 kb on - strand at 817.395 kb on - strand at 817.469 kb on - strand at 818.131 kb on + strand at 818.218 kb on - strand at 818.218 kb on - strand at 818.278 kb on - strand at 818.496 kb on + strand, within AMB_RS03900 at 818.496 kb on + strand, within AMB_RS03900 at 818.496 kb on + strand, within AMB_RS03900 at 818.496 kb on + strand, within AMB_RS03900 at 818.497 kb on - strand, within AMB_RS03900 at 818.497 kb on - strand, within AMB_RS03900 at 818.673 kb on + strand, within AMB_RS03900 at 818.673 kb on + strand, within AMB_RS03900 at 818.674 kb on - strand, within AMB_RS03900 at 818.674 kb on - strand, within AMB_RS03900 at 818.674 kb on - strand, within AMB_RS03900 at 818.895 kb on + strand, within AMB_RS03900 at 818.895 kb on + strand, within AMB_RS03900 at 819.076 kb on + strand at 819.076 kb on + strand at 819.076 kb on + strand at 819.076 kb on + strand at 819.077 kb on - strand at 819.077 kb on - strand at 819.077 kb on - strand at 819.077 kb on - strand at 819.077 kb on - strand at 819.077 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 150_mag_3 remove 816,461 + AMB_RS03890 0.20 +0.3 816,462 - AMB_RS03890 0.20 -0.2 816,552 - AMB_RS03890 0.28 +0.1 816,552 - AMB_RS03890 0.28 -0.1 816,552 - AMB_RS03890 0.28 -0.3 816,584 + AMB_RS03890 0.31 -0.3 816,585 - AMB_RS03890 0.31 -0.2 816,929 + AMB_RS03890 0.64 -1.1 816,929 + AMB_RS03890 0.64 +0.8 816,930 - AMB_RS03890 0.64 +0.2 816,930 - AMB_RS03890 0.64 -0.2 816,930 - AMB_RS03890 0.64 -2.5 817,232 + -0.5 817,232 + -0.0 817,232 + -0.1 817,232 + +0.1 817,232 + -0.1 817,232 + +0.0 817,232 + +0.3 817,233 - -0.1 817,233 - -0.7 817,233 - -0.9 817,233 - -0.2 817,233 - -0.5 817,310 + +0.5 817,310 + +0.0 817,311 - -1.7 817,346 - +0.2 817,346 - -0.3 817,346 - +0.0 817,346 - -0.0 817,348 + +1.3 817,348 + +0.6 817,348 + -0.5 817,348 + +0.4 817,349 - -1.0 817,349 - -0.4 817,394 + -0.5 817,394 + -0.2 817,395 - +0.1 817,395 - -0.6 817,395 - -0.3 817,395 - +1.8 817,395 - +0.6 817,469 - +1.5 818,131 + -0.8 818,218 - +0.1 818,218 - -0.2 818,278 - -0.6 818,496 + AMB_RS03900 0.33 +1.7 818,496 + AMB_RS03900 0.33 +0.9 818,496 + AMB_RS03900 0.33 +1.0 818,496 + AMB_RS03900 0.33 -0.7 818,497 - AMB_RS03900 0.33 +0.1 818,497 - AMB_RS03900 0.33 -0.1 818,673 + AMB_RS03900 0.58 +0.4 818,673 + AMB_RS03900 0.58 +0.2 818,674 - AMB_RS03900 0.58 -0.5 818,674 - AMB_RS03900 0.58 -0.9 818,674 - AMB_RS03900 0.58 -0.5 818,895 + AMB_RS03900 0.89 -0.6 818,895 + AMB_RS03900 0.89 -1.4 819,076 + -0.4 819,076 + -1.1 819,076 + -0.3 819,076 + -0.5 819,077 - -0.3 819,077 - +0.1 819,077 - -0.2 819,077 - -0.2 819,077 - -0.2 819,077 - -0.3
Or see this region's nucleotide sequence