Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS03890

Experiment: 150_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS03880 and AMB_RS03885 are separated by 107 nucleotidesAMB_RS03885 and AMB_RS03890 are separated by 13 nucleotidesAMB_RS03890 and AMB_RS03895 are separated by 92 nucleotidesAMB_RS03895 and AMB_RS03900 are separated by 128 nucleotides AMB_RS03880: AMB_RS03880 - tetratricopeptide repeat-containing protein, at 814,871 to 815,638 _RS03880 AMB_RS03885: AMB_RS03885 - pentapeptide repeat-containing protein, at 815,746 to 816,240 _RS03885 AMB_RS03890: AMB_RS03890 - GGDEF domain-containing protein, at 816,254 to 817,312 _RS03890 AMB_RS03895: AMB_RS03895 - response regulator, at 817,405 to 818,133 _RS03895 AMB_RS03900: AMB_RS03900 - hypothetical protein, at 818,262 to 818,972 _RS03900 Position (kb) 816 817 818Strain fitness (log2 ratio) -2 -1 0 1 2at 815.293 kb on - strand, within AMB_RS03880at 815.293 kb on - strand, within AMB_RS03880at 815.293 kb on - strand, within AMB_RS03880at 815.293 kb on - strand, within AMB_RS03880at 815.293 kb on - strand, within AMB_RS03880at 815.313 kb on + strand, within AMB_RS03880at 815.313 kb on + strand, within AMB_RS03880at 815.314 kb on - strand, within AMB_RS03880at 815.314 kb on - strand, within AMB_RS03880at 815.314 kb on - strand, within AMB_RS03880at 815.434 kb on - strand, within AMB_RS03880at 815.434 kb on - strand, within AMB_RS03880at 815.434 kb on - strand, within AMB_RS03880at 815.679 kb on + strandat 815.699 kb on - strandat 815.705 kb on + strandat 815.705 kb on + strandat 815.705 kb on + strandat 815.714 kb on + strandat 815.715 kb on - strandat 815.734 kb on + strandat 815.745 kb on + strandat 815.746 kb on - strandat 815.746 kb on - strandat 815.854 kb on + strand, within AMB_RS03885at 815.855 kb on - strand, within AMB_RS03885at 815.855 kb on - strand, within AMB_RS03885at 815.855 kb on - strand, within AMB_RS03885at 815.979 kb on + strand, within AMB_RS03885at 815.979 kb on + strand, within AMB_RS03885at 816.100 kb on + strand, within AMB_RS03885at 816.100 kb on + strand, within AMB_RS03885at 816.249 kb on + strandat 816.250 kb on - strandat 816.350 kb on + strandat 816.350 kb on + strandat 816.351 kb on - strandat 816.351 kb on - strandat 816.351 kb on - strandat 816.351 kb on - strandat 816.351 kb on - strandat 816.368 kb on + strand, within AMB_RS03890at 816.368 kb on + strand, within AMB_RS03890at 816.368 kb on + strand, within AMB_RS03890at 816.368 kb on + strand, within AMB_RS03890at 816.369 kb on - strand, within AMB_RS03890at 816.369 kb on - strand, within AMB_RS03890at 816.369 kb on - strand, within AMB_RS03890at 816.369 kb on - strand, within AMB_RS03890at 816.461 kb on + strand, within AMB_RS03890at 816.462 kb on - strand, within AMB_RS03890at 816.552 kb on - strand, within AMB_RS03890at 816.552 kb on - strand, within AMB_RS03890at 816.552 kb on - strand, within AMB_RS03890at 816.584 kb on + strand, within AMB_RS03890at 816.585 kb on - strand, within AMB_RS03890at 816.929 kb on + strand, within AMB_RS03890at 816.929 kb on + strand, within AMB_RS03890at 816.930 kb on - strand, within AMB_RS03890at 816.930 kb on - strand, within AMB_RS03890at 816.930 kb on - strand, within AMB_RS03890at 817.232 kb on + strandat 817.232 kb on + strandat 817.232 kb on + strandat 817.232 kb on + strandat 817.232 kb on + strandat 817.232 kb on + strandat 817.232 kb on + strandat 817.233 kb on - strandat 817.233 kb on - strandat 817.233 kb on - strandat 817.233 kb on - strandat 817.233 kb on - strandat 817.310 kb on + strandat 817.310 kb on + strandat 817.311 kb on - strandat 817.346 kb on - strandat 817.346 kb on - strandat 817.346 kb on - strandat 817.346 kb on - strandat 817.348 kb on + strandat 817.348 kb on + strandat 817.348 kb on + strandat 817.348 kb on + strandat 817.349 kb on - strandat 817.349 kb on - strandat 817.394 kb on + strandat 817.394 kb on + strandat 817.395 kb on - strandat 817.395 kb on - strandat 817.395 kb on - strandat 817.395 kb on - strandat 817.395 kb on - strandat 817.469 kb on - strandat 818.131 kb on + strandat 818.218 kb on - strandat 818.218 kb on - strandat 818.278 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_mag_3
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815,293 - AMB_RS03880 0.55 -0.1
815,293 - AMB_RS03880 0.55 +0.1
815,293 - AMB_RS03880 0.55 +0.1
815,293 - AMB_RS03880 0.55 -0.5
815,293 - AMB_RS03880 0.55 -0.5
815,313 + AMB_RS03880 0.58 -0.4
815,313 + AMB_RS03880 0.58 +0.1
815,314 - AMB_RS03880 0.58 -0.2
815,314 - AMB_RS03880 0.58 +0.0
815,314 - AMB_RS03880 0.58 -0.2
815,434 - AMB_RS03880 0.73 +0.5
815,434 - AMB_RS03880 0.73 -0.2
815,434 - AMB_RS03880 0.73 +0.4
815,679 + +0.8
815,699 - +1.3
815,705 + +0.2
815,705 + -1.0
815,705 + +0.0
815,714 + +0.5
815,715 - +1.5
815,734 + -0.3
815,745 + -0.8
815,746 - -0.3
815,746 - +0.3
815,854 + AMB_RS03885 0.22 -0.9
815,855 - AMB_RS03885 0.22 -1.0
815,855 - AMB_RS03885 0.22 -0.6
815,855 - AMB_RS03885 0.22 +0.5
815,979 + AMB_RS03885 0.47 -0.9
815,979 + AMB_RS03885 0.47 -0.3
816,100 + AMB_RS03885 0.72 +0.4
816,100 + AMB_RS03885 0.72 -0.2
816,249 + +0.1
816,250 - +0.1
816,350 + -1.2
816,350 + +1.3
816,351 - -0.5
816,351 - +0.3
816,351 - -0.4
816,351 - -0.3
816,351 - -1.1
816,368 + AMB_RS03890 0.11 -0.5
816,368 + AMB_RS03890 0.11 -0.3
816,368 + AMB_RS03890 0.11 -1.1
816,368 + AMB_RS03890 0.11 -0.7
816,369 - AMB_RS03890 0.11 +0.0
816,369 - AMB_RS03890 0.11 -0.5
816,369 - AMB_RS03890 0.11 -0.3
816,369 - AMB_RS03890 0.11 -0.2
816,461 + AMB_RS03890 0.20 +0.3
816,462 - AMB_RS03890 0.20 -0.2
816,552 - AMB_RS03890 0.28 +0.1
816,552 - AMB_RS03890 0.28 -0.1
816,552 - AMB_RS03890 0.28 -0.3
816,584 + AMB_RS03890 0.31 -0.3
816,585 - AMB_RS03890 0.31 -0.2
816,929 + AMB_RS03890 0.64 -1.1
816,929 + AMB_RS03890 0.64 +0.8
816,930 - AMB_RS03890 0.64 +0.2
816,930 - AMB_RS03890 0.64 -0.2
816,930 - AMB_RS03890 0.64 -2.5
817,232 + -0.5
817,232 + -0.0
817,232 + -0.1
817,232 + +0.1
817,232 + -0.1
817,232 + +0.0
817,232 + +0.3
817,233 - -0.1
817,233 - -0.7
817,233 - -0.9
817,233 - -0.2
817,233 - -0.5
817,310 + +0.5
817,310 + +0.0
817,311 - -1.7
817,346 - +0.2
817,346 - -0.3
817,346 - +0.0
817,346 - -0.0
817,348 + +1.3
817,348 + +0.6
817,348 + -0.5
817,348 + +0.4
817,349 - -1.0
817,349 - -0.4
817,394 + -0.5
817,394 + -0.2
817,395 - +0.1
817,395 - -0.6
817,395 - -0.3
817,395 - +1.8
817,395 - +0.6
817,469 - +1.5
818,131 + -0.8
818,218 - +0.1
818,218 - -0.2
818,278 - -0.6

Or see this region's nucleotide sequence