Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS03545

Experiment: 150_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS03540 and AMB_RS03545 are separated by 28 nucleotidesAMB_RS03545 and AMB_RS03550 are separated by 86 nucleotides AMB_RS03540: AMB_RS03540 - hypothetical protein, at 743,507 to 744,361 _RS03540 AMB_RS03545: AMB_RS03545 - hypothetical protein, at 744,390 to 744,887 _RS03545 AMB_RS03550: AMB_RS03550 - hypothetical protein, at 744,974 to 746,083 _RS03550 Position (kb) 744 745Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 743.433 kb on + strandat 743.434 kb on - strandat 743.458 kb on + strandat 743.458 kb on + strandat 743.459 kb on - strandat 743.459 kb on - strandat 743.459 kb on - strandat 743.503 kb on + strandat 743.503 kb on + strandat 743.503 kb on + strandat 743.531 kb on + strandat 743.532 kb on - strandat 743.624 kb on + strand, within AMB_RS03540at 743.624 kb on + strand, within AMB_RS03540at 743.636 kb on + strand, within AMB_RS03540at 743.636 kb on + strand, within AMB_RS03540at 743.637 kb on - strand, within AMB_RS03540at 743.637 kb on - strand, within AMB_RS03540at 743.637 kb on - strand, within AMB_RS03540at 743.637 kb on - strand, within AMB_RS03540at 743.637 kb on - strand, within AMB_RS03540at 743.637 kb on - strand, within AMB_RS03540at 743.637 kb on - strand, within AMB_RS03540at 743.637 kb on - strand, within AMB_RS03540at 743.638 kb on + strand, within AMB_RS03540at 743.638 kb on + strand, within AMB_RS03540at 743.638 kb on + strand, within AMB_RS03540at 743.638 kb on + strand, within AMB_RS03540at 743.639 kb on - strand, within AMB_RS03540at 743.639 kb on - strand, within AMB_RS03540at 743.639 kb on - strand, within AMB_RS03540at 743.639 kb on - strand, within AMB_RS03540at 743.639 kb on - strand, within AMB_RS03540at 743.639 kb on - strand, within AMB_RS03540at 743.681 kb on + strand, within AMB_RS03540at 743.682 kb on - strand, within AMB_RS03540at 743.686 kb on + strand, within AMB_RS03540at 743.686 kb on + strand, within AMB_RS03540at 743.686 kb on + strand, within AMB_RS03540at 743.686 kb on + strand, within AMB_RS03540at 743.686 kb on + strand, within AMB_RS03540at 743.686 kb on + strand, within AMB_RS03540at 743.686 kb on + strand, within AMB_RS03540at 743.687 kb on - strand, within AMB_RS03540at 743.687 kb on - strand, within AMB_RS03540at 743.687 kb on - strand, within AMB_RS03540at 743.687 kb on - strand, within AMB_RS03540at 743.687 kb on - strand, within AMB_RS03540at 743.687 kb on - strand, within AMB_RS03540at 743.687 kb on - strand, within AMB_RS03540at 743.878 kb on + strand, within AMB_RS03540at 743.878 kb on + strand, within AMB_RS03540at 743.879 kb on - strand, within AMB_RS03540at 743.879 kb on - strand, within AMB_RS03540at 743.879 kb on - strand, within AMB_RS03540at 743.879 kb on - strand, within AMB_RS03540at 743.879 kb on - strand, within AMB_RS03540at 743.879 kb on - strand, within AMB_RS03540at 743.902 kb on + strand, within AMB_RS03540at 743.902 kb on + strand, within AMB_RS03540at 743.902 kb on + strand, within AMB_RS03540at 743.902 kb on + strand, within AMB_RS03540at 743.903 kb on - strand, within AMB_RS03540at 743.903 kb on - strand, within AMB_RS03540at 743.948 kb on + strand, within AMB_RS03540at 743.948 kb on + strand, within AMB_RS03540at 743.949 kb on - strand, within AMB_RS03540at 744.099 kb on - strand, within AMB_RS03540at 744.099 kb on - strand, within AMB_RS03540at 744.099 kb on - strand, within AMB_RS03540at 744.128 kb on + strand, within AMB_RS03540at 744.128 kb on + strand, within AMB_RS03540at 744.128 kb on + strand, within AMB_RS03540at 744.129 kb on - strand, within AMB_RS03540at 744.326 kb on + strandat 744.326 kb on + strandat 744.327 kb on - strandat 744.327 kb on - strandat 744.327 kb on - strandat 744.327 kb on - strandat 744.327 kb on - strandat 744.327 kb on - strandat 744.327 kb on - strandat 744.327 kb on - strandat 744.401 kb on + strandat 744.402 kb on - strandat 744.402 kb on - strandat 744.411 kb on + strandat 744.412 kb on - strandat 744.412 kb on - strandat 744.412 kb on - strandat 744.735 kb on - strand, within AMB_RS03545at 744.837 kb on + strand, within AMB_RS03545at 744.863 kb on + strandat 744.863 kb on + strandat 744.864 kb on - strandat 744.864 kb on - strandat 745.301 kb on + strand, within AMB_RS03550at 745.302 kb on - strand, within AMB_RS03550at 745.352 kb on + strand, within AMB_RS03550at 745.353 kb on - strand, within AMB_RS03550at 745.604 kb on + strand, within AMB_RS03550at 745.829 kb on + strand, within AMB_RS03550at 745.830 kb on - strand, within AMB_RS03550at 745.830 kb on - strand, within AMB_RS03550at 745.830 kb on - strand, within AMB_RS03550

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_mag_3
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743,433 + -0.3
743,434 - -0.6
743,458 + +2.1
743,458 + +0.4
743,459 - +0.7
743,459 - -0.9
743,459 - +0.0
743,503 + +0.2
743,503 + -2.2
743,503 + -0.1
743,531 + -1.4
743,532 - +0.1
743,624 + AMB_RS03540 0.14 -1.5
743,624 + AMB_RS03540 0.14 -1.0
743,636 + AMB_RS03540 0.15 +0.6
743,636 + AMB_RS03540 0.15 -0.2
743,637 - AMB_RS03540 0.15 -1.0
743,637 - AMB_RS03540 0.15 +0.1
743,637 - AMB_RS03540 0.15 -1.0
743,637 - AMB_RS03540 0.15 -2.2
743,637 - AMB_RS03540 0.15 +0.2
743,637 - AMB_RS03540 0.15 +0.2
743,637 - AMB_RS03540 0.15 +0.7
743,637 - AMB_RS03540 0.15 -0.2
743,638 + AMB_RS03540 0.15 -0.0
743,638 + AMB_RS03540 0.15 -0.0
743,638 + AMB_RS03540 0.15 +0.6
743,638 + AMB_RS03540 0.15 -0.6
743,639 - AMB_RS03540 0.15 +0.1
743,639 - AMB_RS03540 0.15 -0.1
743,639 - AMB_RS03540 0.15 -0.8
743,639 - AMB_RS03540 0.15 +0.2
743,639 - AMB_RS03540 0.15 -0.5
743,639 - AMB_RS03540 0.15 -0.2
743,681 + AMB_RS03540 0.20 -1.1
743,682 - AMB_RS03540 0.20 +0.3
743,686 + AMB_RS03540 0.21 -1.0
743,686 + AMB_RS03540 0.21 +0.0
743,686 + AMB_RS03540 0.21 -4.6
743,686 + AMB_RS03540 0.21 +0.4
743,686 + AMB_RS03540 0.21 -0.1
743,686 + AMB_RS03540 0.21 -0.8
743,686 + AMB_RS03540 0.21 +0.1
743,687 - AMB_RS03540 0.21 -0.4
743,687 - AMB_RS03540 0.21 -0.5
743,687 - AMB_RS03540 0.21 +0.4
743,687 - AMB_RS03540 0.21 -0.3
743,687 - AMB_RS03540 0.21 -0.3
743,687 - AMB_RS03540 0.21 -1.1
743,687 - AMB_RS03540 0.21 +0.0
743,878 + AMB_RS03540 0.43 +0.9
743,878 + AMB_RS03540 0.43 -0.1
743,879 - AMB_RS03540 0.44 -1.0
743,879 - AMB_RS03540 0.44 -0.2
743,879 - AMB_RS03540 0.44 -0.3
743,879 - AMB_RS03540 0.44 -0.3
743,879 - AMB_RS03540 0.44 -0.1
743,879 - AMB_RS03540 0.44 -0.4
743,902 + AMB_RS03540 0.46 -0.3
743,902 + AMB_RS03540 0.46 -0.7
743,902 + AMB_RS03540 0.46 -0.7
743,902 + AMB_RS03540 0.46 +0.1
743,903 - AMB_RS03540 0.46 +0.4
743,903 - AMB_RS03540 0.46 +1.0
743,948 + AMB_RS03540 0.52 -0.5
743,948 + AMB_RS03540 0.52 -0.9
743,949 - AMB_RS03540 0.52 -0.8
744,099 - AMB_RS03540 0.69 +0.2
744,099 - AMB_RS03540 0.69 +0.1
744,099 - AMB_RS03540 0.69 -0.2
744,128 + AMB_RS03540 0.73 -1.3
744,128 + AMB_RS03540 0.73 -1.1
744,128 + AMB_RS03540 0.73 -0.5
744,129 - AMB_RS03540 0.73 -1.3
744,326 + -1.1
744,326 + -2.4
744,327 - +0.7
744,327 - +0.6
744,327 - -0.3
744,327 - -0.2
744,327 - -0.2
744,327 - -0.2
744,327 - +0.1
744,327 - -0.7
744,401 + -0.2
744,402 - -1.6
744,402 - +0.2
744,411 + +0.4
744,412 - -2.3
744,412 - -0.3
744,412 - -2.4
744,735 - AMB_RS03545 0.69 -0.0
744,837 + AMB_RS03545 0.90 -0.0
744,863 + +0.1
744,863 + -0.8
744,864 - +0.3
744,864 - -0.5
745,301 + AMB_RS03550 0.29 -0.2
745,302 - AMB_RS03550 0.30 -0.0
745,352 + AMB_RS03550 0.34 -1.2
745,353 - AMB_RS03550 0.34 -0.2
745,604 + AMB_RS03550 0.57 -1.2
745,829 + AMB_RS03550 0.77 +0.2
745,830 - AMB_RS03550 0.77 -2.6
745,830 - AMB_RS03550 0.77 +1.0
745,830 - AMB_RS03550 0.77 -0.8

Or see this region's nucleotide sequence