Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS03270

Experiment: 150_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS03260 and AMB_RS03265 are separated by 24 nucleotidesAMB_RS03265 and AMB_RS03270 are separated by 115 nucleotidesAMB_RS03270 and AMB_RS03275 are separated by 503 nucleotides AMB_RS03260: AMB_RS03260 - hypothetical protein, at 681,796 to 682,155 _RS03260 AMB_RS03265: AMB_RS03265 - enoyl-CoA hydratase, at 682,180 to 682,956 _RS03265 AMB_RS03270: AMB_RS03270 - 30S ribosomal protein S20, at 683,072 to 683,344 _RS03270 AMB_RS03275: AMB_RS03275 - chromosomal replication initiator protein DnaA, at 683,848 to 685,248 _RS03275 Position (kb) 683 684Strain fitness (log2 ratio) -2 -1 0 1at 682.161 kb on + strandat 682.162 kb on - strandat 682.402 kb on + strand, within AMB_RS03265at 682.402 kb on + strand, within AMB_RS03265at 682.402 kb on + strand, within AMB_RS03265at 682.402 kb on + strand, within AMB_RS03265at 682.402 kb on + strand, within AMB_RS03265at 682.402 kb on + strand, within AMB_RS03265at 682.403 kb on - strand, within AMB_RS03265at 682.403 kb on - strand, within AMB_RS03265at 682.403 kb on - strand, within AMB_RS03265at 682.403 kb on - strand, within AMB_RS03265at 682.403 kb on - strand, within AMB_RS03265at 682.403 kb on - strand, within AMB_RS03265at 682.403 kb on - strand, within AMB_RS03265at 682.403 kb on - strand, within AMB_RS03265at 682.414 kb on + strand, within AMB_RS03265at 682.414 kb on + strand, within AMB_RS03265at 682.414 kb on + strand, within AMB_RS03265at 682.414 kb on + strand, within AMB_RS03265at 682.414 kb on + strand, within AMB_RS03265at 682.414 kb on + strand, within AMB_RS03265at 682.415 kb on - strand, within AMB_RS03265at 682.415 kb on - strand, within AMB_RS03265at 682.415 kb on - strand, within AMB_RS03265at 682.415 kb on - strand, within AMB_RS03265at 682.415 kb on - strand, within AMB_RS03265at 683.025 kb on + strandat 683.342 kb on + strandat 683.356 kb on + strandat 683.356 kb on + strandat 683.356 kb on + strandat 683.357 kb on - strandat 683.359 kb on + strandat 683.676 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_mag_3
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682,161 + -0.7
682,162 - -0.3
682,402 + AMB_RS03265 0.29 -2.3
682,402 + AMB_RS03265 0.29 +0.2
682,402 + AMB_RS03265 0.29 +0.4
682,402 + AMB_RS03265 0.29 -1.0
682,402 + AMB_RS03265 0.29 -0.3
682,402 + AMB_RS03265 0.29 -0.3
682,403 - AMB_RS03265 0.29 -0.4
682,403 - AMB_RS03265 0.29 -0.5
682,403 - AMB_RS03265 0.29 -0.8
682,403 - AMB_RS03265 0.29 -0.4
682,403 - AMB_RS03265 0.29 -0.5
682,403 - AMB_RS03265 0.29 -0.1
682,403 - AMB_RS03265 0.29 +0.0
682,403 - AMB_RS03265 0.29 -0.7
682,414 + AMB_RS03265 0.30 +0.0
682,414 + AMB_RS03265 0.30 -0.4
682,414 + AMB_RS03265 0.30 -0.8
682,414 + AMB_RS03265 0.30 -2.1
682,414 + AMB_RS03265 0.30 -2.0
682,414 + AMB_RS03265 0.30 -0.9
682,415 - AMB_RS03265 0.30 -2.2
682,415 - AMB_RS03265 0.30 -0.4
682,415 - AMB_RS03265 0.30 -0.0
682,415 - AMB_RS03265 0.30 +0.1
682,415 - AMB_RS03265 0.30 -1.0
683,025 + -0.4
683,342 + +0.3
683,356 + -0.0
683,356 + -0.2
683,356 + -0.3
683,357 - -1.1
683,359 + +0.1
683,676 + +0.2

Or see this region's nucleotide sequence