Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS01525

Experiment: 150_mag_3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAMB_RS01520 and AMB_RS01525 are separated by 15 nucleotidesAMB_RS01525 and AMB_RS01530 overlap by 4 nucleotides AMB_RS01520: AMB_RS01520 - Zn-dependent protease, at 336,528 to 337,985 _RS01520 AMB_RS01525: AMB_RS01525 - RNA pyrophosphohydrolase, at 338,001 to 338,507 _RS01525 AMB_RS01530: AMB_RS01530 - divergent polysaccharide deacetylase family protein, at 338,504 to 339,943 _RS01530 Position (kb) 338 339Strain fitness (log2 ratio) -2 -1 0 1at 337.059 kb on + strand, within AMB_RS01520at 337.060 kb on - strand, within AMB_RS01520at 337.060 kb on - strand, within AMB_RS01520at 337.072 kb on - strand, within AMB_RS01520at 337.116 kb on + strand, within AMB_RS01520at 337.117 kb on - strand, within AMB_RS01520at 337.335 kb on + strand, within AMB_RS01520at 337.358 kb on - strand, within AMB_RS01520at 337.552 kb on - strand, within AMB_RS01520at 337.825 kb on + strand, within AMB_RS01520at 337.890 kb on + strandat 337.979 kb on + strandat 337.980 kb on - strandat 338.053 kb on + strand, within AMB_RS01525at 338.053 kb on + strand, within AMB_RS01525at 338.054 kb on - strand, within AMB_RS01525at 338.054 kb on - strand, within AMB_RS01525at 338.251 kb on + strand, within AMB_RS01525at 338.492 kb on + strandat 338.492 kb on + strandat 338.492 kb on + strandat 338.493 kb on - strandat 338.493 kb on - strandat 338.781 kb on + strand, within AMB_RS01530at 338.781 kb on + strand, within AMB_RS01530at 338.781 kb on + strand, within AMB_RS01530at 338.781 kb on + strand, within AMB_RS01530at 338.782 kb on - strand, within AMB_RS01530at 338.782 kb on - strand, within AMB_RS01530at 338.782 kb on - strand, within AMB_RS01530at 338.782 kb on - strand, within AMB_RS01530at 338.870 kb on - strand, within AMB_RS01530at 338.871 kb on + strand, within AMB_RS01530at 338.871 kb on + strand, within AMB_RS01530at 338.872 kb on - strand, within AMB_RS01530at 339.040 kb on + strand, within AMB_RS01530at 339.040 kb on + strand, within AMB_RS01530at 339.040 kb on + strand, within AMB_RS01530at 339.057 kb on + strand, within AMB_RS01530at 339.057 kb on + strand, within AMB_RS01530at 339.193 kb on - strand, within AMB_RS01530at 339.193 kb on - strand, within AMB_RS01530at 339.193 kb on - strand, within AMB_RS01530at 339.324 kb on + strand, within AMB_RS01530at 339.324 kb on + strand, within AMB_RS01530at 339.324 kb on + strand, within AMB_RS01530at 339.324 kb on + strand, within AMB_RS01530at 339.324 kb on + strand, within AMB_RS01530at 339.325 kb on - strand, within AMB_RS01530at 339.444 kb on + strand, within AMB_RS01530at 339.444 kb on + strand, within AMB_RS01530at 339.445 kb on - strand, within AMB_RS01530

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 150_mag_3
remove
337,059 + AMB_RS01520 0.36 -1.0
337,060 - AMB_RS01520 0.36 +0.4
337,060 - AMB_RS01520 0.36 -0.3
337,072 - AMB_RS01520 0.37 +0.6
337,116 + AMB_RS01520 0.40 -0.3
337,117 - AMB_RS01520 0.40 -0.3
337,335 + AMB_RS01520 0.55 +0.1
337,358 - AMB_RS01520 0.57 -0.0
337,552 - AMB_RS01520 0.70 +0.1
337,825 + AMB_RS01520 0.89 -2.2
337,890 + -0.4
337,979 + -0.9
337,980 - +0.1
338,053 + AMB_RS01525 0.10 -0.1
338,053 + AMB_RS01525 0.10 +0.1
338,054 - AMB_RS01525 0.10 +1.7
338,054 - AMB_RS01525 0.10 -0.4
338,251 + AMB_RS01525 0.49 -0.4
338,492 + +0.4
338,492 + +0.2
338,492 + +0.7
338,493 - -0.0
338,493 - -0.1
338,781 + AMB_RS01530 0.19 -0.4
338,781 + AMB_RS01530 0.19 +1.5
338,781 + AMB_RS01530 0.19 +1.7
338,781 + AMB_RS01530 0.19 +0.1
338,782 - AMB_RS01530 0.19 +0.1
338,782 - AMB_RS01530 0.19 +0.0
338,782 - AMB_RS01530 0.19 -0.1
338,782 - AMB_RS01530 0.19 -0.6
338,870 - AMB_RS01530 0.25 -0.4
338,871 + AMB_RS01530 0.25 +0.2
338,871 + AMB_RS01530 0.25 +1.0
338,872 - AMB_RS01530 0.26 +0.6
339,040 + AMB_RS01530 0.37 -1.2
339,040 + AMB_RS01530 0.37 +0.0
339,040 + AMB_RS01530 0.37 -0.3
339,057 + AMB_RS01530 0.38 +0.2
339,057 + AMB_RS01530 0.38 -0.3
339,193 - AMB_RS01530 0.48 -0.1
339,193 - AMB_RS01530 0.48 -0.5
339,193 - AMB_RS01530 0.48 +0.4
339,324 + AMB_RS01530 0.57 +0.2
339,324 + AMB_RS01530 0.57 -0.4
339,324 + AMB_RS01530 0.57 -0.7
339,324 + AMB_RS01530 0.57 +0.3
339,324 + AMB_RS01530 0.57 -0.1
339,325 - AMB_RS01530 0.57 -0.5
339,444 + AMB_RS01530 0.65 -0.5
339,444 + AMB_RS01530 0.65 -0.3
339,445 - AMB_RS01530 0.65 -0.2

Or see this region's nucleotide sequence