Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS01285

Experiment: 150_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS01275 and AMB_RS01280 overlap by 4 nucleotidesAMB_RS01280 and AMB_RS01285 overlap by 11 nucleotidesAMB_RS01285 and AMB_RS01290 overlap by 4 nucleotidesAMB_RS01290 and AMB_RS01295 are separated by 5 nucleotides AMB_RS01275: AMB_RS01275 - amidohydrolase, at 282,659 to 283,687 _RS01275 AMB_RS01280: AMB_RS01280 - 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase, at 283,684 to 284,379 _RS01280 AMB_RS01285: AMB_RS01285 - dehydrogenase, at 284,369 to 285,307 _RS01285 AMB_RS01290: AMB_RS01290 - 2-pyrone-4,6-dicarboxylate hydrolase, at 285,304 to 286,221 _RS01290 AMB_RS01295: AMB_RS01295 - gfo/Idh/MocA family oxidoreductase, at 286,227 to 287,189 _RS01295 Position (kb) 284 285 286Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 283.432 kb on + strand, within AMB_RS01275at 283.442 kb on + strand, within AMB_RS01275at 283.553 kb on + strand, within AMB_RS01275at 283.553 kb on + strand, within AMB_RS01275at 283.554 kb on - strand, within AMB_RS01275at 283.556 kb on + strand, within AMB_RS01275at 283.556 kb on + strand, within AMB_RS01275at 283.556 kb on + strand, within AMB_RS01275at 283.556 kb on + strand, within AMB_RS01275at 283.574 kb on + strand, within AMB_RS01275at 283.574 kb on + strand, within AMB_RS01275at 283.575 kb on - strand, within AMB_RS01275at 283.575 kb on - strand, within AMB_RS01275at 283.575 kb on - strand, within AMB_RS01275at 283.575 kb on - strand, within AMB_RS01275at 283.622 kb on + strandat 283.622 kb on + strandat 283.622 kb on + strandat 283.646 kb on + strandat 283.646 kb on + strandat 283.821 kb on + strand, within AMB_RS01280at 283.822 kb on + strand, within AMB_RS01280at 283.822 kb on + strand, within AMB_RS01280at 283.822 kb on + strand, within AMB_RS01280at 283.822 kb on + strand, within AMB_RS01280at 283.822 kb on + strand, within AMB_RS01280at 283.822 kb on + strand, within AMB_RS01280at 283.822 kb on + strand, within AMB_RS01280at 283.823 kb on - strand, within AMB_RS01280at 283.823 kb on - strand, within AMB_RS01280at 283.823 kb on - strand, within AMB_RS01280at 283.823 kb on - strand, within AMB_RS01280at 283.823 kb on - strand, within AMB_RS01280at 283.823 kb on - strand, within AMB_RS01280at 283.823 kb on - strand, within AMB_RS01280at 283.824 kb on + strand, within AMB_RS01280at 283.824 kb on + strand, within AMB_RS01280at 283.824 kb on + strand, within AMB_RS01280at 283.824 kb on + strand, within AMB_RS01280at 283.824 kb on + strand, within AMB_RS01280at 283.824 kb on + strand, within AMB_RS01280at 283.824 kb on + strand, within AMB_RS01280at 283.824 kb on + strand, within AMB_RS01280at 283.824 kb on + strand, within AMB_RS01280at 283.824 kb on + strand, within AMB_RS01280at 283.824 kb on + strand, within AMB_RS01280at 283.824 kb on + strand, within AMB_RS01280at 283.824 kb on + strand, within AMB_RS01280at 283.825 kb on - strand, within AMB_RS01280at 283.825 kb on - strand, within AMB_RS01280at 283.825 kb on - strand, within AMB_RS01280at 283.825 kb on - strand, within AMB_RS01280at 283.825 kb on - strand, within AMB_RS01280at 283.837 kb on + strand, within AMB_RS01280at 283.837 kb on + strand, within AMB_RS01280at 283.837 kb on + strand, within AMB_RS01280at 284.329 kb on + strandat 284.329 kb on + strandat 284.329 kb on + strandat 284.329 kb on + strandat 284.329 kb on + strandat 284.329 kb on + strandat 284.329 kb on + strandat 284.329 kb on + strandat 284.329 kb on + strandat 284.329 kb on + strandat 284.329 kb on + strandat 284.329 kb on + strandat 284.329 kb on + strandat 284.329 kb on + strandat 284.329 kb on + strandat 284.329 kb on + strandat 284.329 kb on + strandat 284.329 kb on + strandat 284.329 kb on - strandat 284.330 kb on - strandat 284.330 kb on - strandat 284.330 kb on - strandat 284.330 kb on - strandat 284.330 kb on - strandat 284.330 kb on - strandat 284.368 kb on + strandat 284.368 kb on + strandat 284.368 kb on + strandat 284.368 kb on + strandat 284.368 kb on + strandat 284.368 kb on + strandat 284.368 kb on + strandat 284.368 kb on + strandat 284.368 kb on + strandat 284.368 kb on + strandat 284.369 kb on - strandat 284.369 kb on - strandat 284.369 kb on - strandat 284.377 kb on + strandat 284.483 kb on + strand, within AMB_RS01285at 284.483 kb on + strand, within AMB_RS01285at 284.483 kb on + strand, within AMB_RS01285at 284.483 kb on + strand, within AMB_RS01285at 284.783 kb on + strand, within AMB_RS01285at 284.783 kb on + strand, within AMB_RS01285at 284.784 kb on - strand, within AMB_RS01285at 284.791 kb on + strand, within AMB_RS01285at 284.791 kb on + strand, within AMB_RS01285at 284.791 kb on + strand, within AMB_RS01285at 284.791 kb on + strand, within AMB_RS01285at 284.791 kb on + strand, within AMB_RS01285at 284.791 kb on + strand, within AMB_RS01285at 284.792 kb on - strand, within AMB_RS01285at 284.792 kb on - strand, within AMB_RS01285at 284.792 kb on - strand, within AMB_RS01285at 284.792 kb on - strand, within AMB_RS01285at 284.978 kb on + strand, within AMB_RS01285at 284.979 kb on - strand, within AMB_RS01285at 285.053 kb on + strand, within AMB_RS01285at 285.053 kb on + strand, within AMB_RS01285at 285.053 kb on + strand, within AMB_RS01285at 285.053 kb on + strand, within AMB_RS01285at 285.053 kb on + strand, within AMB_RS01285at 285.053 kb on + strand, within AMB_RS01285at 285.053 kb on + strand, within AMB_RS01285at 285.053 kb on + strand, within AMB_RS01285at 285.053 kb on + strand, within AMB_RS01285at 285.053 kb on + strand, within AMB_RS01285at 285.053 kb on + strand, within AMB_RS01285at 285.053 kb on + strand, within AMB_RS01285at 285.053 kb on + strand, within AMB_RS01285at 285.053 kb on + strand, within AMB_RS01285at 285.053 kb on + strand, within AMB_RS01285at 285.053 kb on + strand, within AMB_RS01285at 285.053 kb on + strand, within AMB_RS01285at 285.054 kb on - strand, within AMB_RS01285at 285.054 kb on - strand, within AMB_RS01285at 285.054 kb on - strand, within AMB_RS01285at 285.054 kb on - strand, within AMB_RS01285at 285.054 kb on - strand, within AMB_RS01285at 285.054 kb on - strand, within AMB_RS01285at 285.191 kb on + strand, within AMB_RS01285at 285.340 kb on + strandat 285.340 kb on + strandat 285.340 kb on + strandat 285.341 kb on - strandat 285.341 kb on - strandat 285.341 kb on - strandat 285.341 kb on - strandat 285.448 kb on + strand, within AMB_RS01290at 285.448 kb on + strand, within AMB_RS01290at 285.448 kb on + strand, within AMB_RS01290at 285.448 kb on + strand, within AMB_RS01290at 285.448 kb on + strand, within AMB_RS01290at 285.448 kb on + strand, within AMB_RS01290at 285.448 kb on + strand, within AMB_RS01290at 285.449 kb on - strand, within AMB_RS01290at 285.449 kb on - strand, within AMB_RS01290at 285.449 kb on - strand, within AMB_RS01290at 285.449 kb on - strand, within AMB_RS01290at 285.449 kb on - strand, within AMB_RS01290at 285.449 kb on - strand, within AMB_RS01290at 285.449 kb on - strand, within AMB_RS01290at 285.449 kb on - strand, within AMB_RS01290at 285.687 kb on + strand, within AMB_RS01290at 285.687 kb on + strand, within AMB_RS01290at 285.687 kb on + strand, within AMB_RS01290at 285.688 kb on - strand, within AMB_RS01290at 285.688 kb on - strand, within AMB_RS01290at 285.772 kb on + strand, within AMB_RS01290at 285.773 kb on - strand, within AMB_RS01290at 285.846 kb on + strand, within AMB_RS01290at 285.846 kb on + strand, within AMB_RS01290at 286.140 kb on + strandat 286.198 kb on + strandat 286.198 kb on + strandat 286.199 kb on - strandat 286.199 kb on - strandat 286.199 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_mag_3
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283,432 + AMB_RS01275 0.75 -0.8
283,442 + AMB_RS01275 0.76 +0.0
283,553 + AMB_RS01275 0.87 -1.1
283,553 + AMB_RS01275 0.87 -0.7
283,554 - AMB_RS01275 0.87 -0.0
283,556 + AMB_RS01275 0.87 +0.1
283,556 + AMB_RS01275 0.87 -0.6
283,556 + AMB_RS01275 0.87 -0.1
283,556 + AMB_RS01275 0.87 -0.7
283,574 + AMB_RS01275 0.89 +1.1
283,574 + AMB_RS01275 0.89 -1.0
283,575 - AMB_RS01275 0.89 -2.3
283,575 - AMB_RS01275 0.89 +2.1
283,575 - AMB_RS01275 0.89 +0.2
283,575 - AMB_RS01275 0.89 +0.0
283,622 + -1.2
283,622 + -0.8
283,622 + -0.9
283,646 + -0.6
283,646 + -0.8
283,821 + AMB_RS01280 0.20 -1.9
283,822 + AMB_RS01280 0.20 -0.8
283,822 + AMB_RS01280 0.20 -0.5
283,822 + AMB_RS01280 0.20 -0.8
283,822 + AMB_RS01280 0.20 +0.2
283,822 + AMB_RS01280 0.20 -0.5
283,822 + AMB_RS01280 0.20 -0.1
283,822 + AMB_RS01280 0.20 +0.1
283,823 - AMB_RS01280 0.20 +0.9
283,823 - AMB_RS01280 0.20 -0.5
283,823 - AMB_RS01280 0.20 +0.2
283,823 - AMB_RS01280 0.20 -0.0
283,823 - AMB_RS01280 0.20 -0.2
283,823 - AMB_RS01280 0.20 -1.4
283,823 - AMB_RS01280 0.20 +0.2
283,824 + AMB_RS01280 0.20 +0.1
283,824 + AMB_RS01280 0.20 -0.9
283,824 + AMB_RS01280 0.20 -0.6
283,824 + AMB_RS01280 0.20 -0.2
283,824 + AMB_RS01280 0.20 -1.4
283,824 + AMB_RS01280 0.20 -1.0
283,824 + AMB_RS01280 0.20 -0.2
283,824 + AMB_RS01280 0.20 -0.6
283,824 + AMB_RS01280 0.20 -0.5
283,824 + AMB_RS01280 0.20 -0.5
283,824 + AMB_RS01280 0.20 +0.2
283,824 + AMB_RS01280 0.20 +0.0
283,824 + AMB_RS01280 0.20 -1.2
283,825 - AMB_RS01280 0.20 +0.0
283,825 - AMB_RS01280 0.20 -0.6
283,825 - AMB_RS01280 0.20 +0.3
283,825 - AMB_RS01280 0.20 +0.7
283,825 - AMB_RS01280 0.20 +0.2
283,837 + AMB_RS01280 0.22 -1.0
283,837 + AMB_RS01280 0.22 -0.9
283,837 + AMB_RS01280 0.22 -2.2
284,329 + +0.1
284,329 + +0.1
284,329 + -0.7
284,329 + -0.3
284,329 + -0.8
284,329 + -0.8
284,329 + -0.9
284,329 + -0.5
284,329 + +0.1
284,329 + +0.5
284,329 + -1.0
284,329 + -0.6
284,329 + +0.2
284,329 + -0.2
284,329 + +0.5
284,329 + -1.3
284,329 + -1.1
284,329 + -0.2
284,329 - +0.2
284,330 - -0.6
284,330 - -0.3
284,330 - +0.7
284,330 - -0.7
284,330 - +0.9
284,330 - +0.8
284,368 + -0.3
284,368 + +0.7
284,368 + +0.2
284,368 + +0.9
284,368 + -0.4
284,368 + +0.5
284,368 + -0.5
284,368 + -0.3
284,368 + +0.3
284,368 + -0.0
284,369 - -0.3
284,369 - -0.3
284,369 - +0.5
284,377 + -0.7
284,483 + AMB_RS01285 0.12 +1.0
284,483 + AMB_RS01285 0.12 -1.1
284,483 + AMB_RS01285 0.12 -0.5
284,483 + AMB_RS01285 0.12 -0.3
284,783 + AMB_RS01285 0.44 -2.5
284,783 + AMB_RS01285 0.44 -1.0
284,784 - AMB_RS01285 0.44 -2.0
284,791 + AMB_RS01285 0.45 -1.4
284,791 + AMB_RS01285 0.45 -0.6
284,791 + AMB_RS01285 0.45 -1.9
284,791 + AMB_RS01285 0.45 -0.6
284,791 + AMB_RS01285 0.45 -1.5
284,791 + AMB_RS01285 0.45 -0.2
284,792 - AMB_RS01285 0.45 +0.3
284,792 - AMB_RS01285 0.45 -0.1
284,792 - AMB_RS01285 0.45 -0.1
284,792 - AMB_RS01285 0.45 -1.2
284,978 + AMB_RS01285 0.65 -1.4
284,979 - AMB_RS01285 0.65 -0.9
285,053 + AMB_RS01285 0.73 +0.3
285,053 + AMB_RS01285 0.73 -0.6
285,053 + AMB_RS01285 0.73 -1.3
285,053 + AMB_RS01285 0.73 -1.0
285,053 + AMB_RS01285 0.73 -1.0
285,053 + AMB_RS01285 0.73 -1.4
285,053 + AMB_RS01285 0.73 -1.1
285,053 + AMB_RS01285 0.73 -1.0
285,053 + AMB_RS01285 0.73 -2.7
285,053 + AMB_RS01285 0.73 -0.2
285,053 + AMB_RS01285 0.73 +0.5
285,053 + AMB_RS01285 0.73 -0.7
285,053 + AMB_RS01285 0.73 -2.0
285,053 + AMB_RS01285 0.73 -1.6
285,053 + AMB_RS01285 0.73 -1.6
285,053 + AMB_RS01285 0.73 -0.4
285,053 + AMB_RS01285 0.73 -0.4
285,054 - AMB_RS01285 0.73 +0.2
285,054 - AMB_RS01285 0.73 +0.4
285,054 - AMB_RS01285 0.73 -0.2
285,054 - AMB_RS01285 0.73 -1.2
285,054 - AMB_RS01285 0.73 -0.2
285,054 - AMB_RS01285 0.73 -1.3
285,191 + AMB_RS01285 0.88 -2.9
285,340 + -2.7
285,340 + -0.5
285,340 + +1.2
285,341 - -0.4
285,341 - -0.0
285,341 - -0.2
285,341 - -1.0
285,448 + AMB_RS01290 0.16 -0.2
285,448 + AMB_RS01290 0.16 -0.9
285,448 + AMB_RS01290 0.16 -0.8
285,448 + AMB_RS01290 0.16 -3.7
285,448 + AMB_RS01290 0.16 -0.1
285,448 + AMB_RS01290 0.16 -0.2
285,448 + AMB_RS01290 0.16 -1.0
285,449 - AMB_RS01290 0.16 +0.6
285,449 - AMB_RS01290 0.16 -0.4
285,449 - AMB_RS01290 0.16 +1.2
285,449 - AMB_RS01290 0.16 -0.4
285,449 - AMB_RS01290 0.16 -0.0
285,449 - AMB_RS01290 0.16 -0.4
285,449 - AMB_RS01290 0.16 -2.4
285,449 - AMB_RS01290 0.16 -0.7
285,687 + AMB_RS01290 0.42 -0.2
285,687 + AMB_RS01290 0.42 -0.8
285,687 + AMB_RS01290 0.42 -1.5
285,688 - AMB_RS01290 0.42 -0.6
285,688 - AMB_RS01290 0.42 -0.3
285,772 + AMB_RS01290 0.51 -2.1
285,773 - AMB_RS01290 0.51 +0.1
285,846 + AMB_RS01290 0.59 -0.3
285,846 + AMB_RS01290 0.59 -3.0
286,140 + -0.9
286,198 + +0.1
286,198 + -0.4
286,199 - -0.1
286,199 - +0.6
286,199 - -0.3

Or see this region's nucleotide sequence