Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS00950

Experiment: 150_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS00945 and AMB_RS00950 overlap by 29 nucleotidesAMB_RS00950 and AMB_RS00955 are separated by 107 nucleotides AMB_RS00940: AMB_RS00940 - PAS domain S-box protein, at 213,387 to 213,917 _RS00940 AMB_RS00945: AMB_RS00945 - hypothetical protein, at 213,859 to 214,929 _RS00945 AMB_RS00950: AMB_RS00950 - Serine phosphatase RsbU, at 214,901 to 216,592 _RS00950 AMB_RS00955: AMB_RS00955 - ATP-binding protein, at 216,700 to 218,016 _RS00955 Position (kb) 214 215 216 217Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 214.115 kb on + strand, within AMB_RS00945at 214.115 kb on + strand, within AMB_RS00945at 214.115 kb on + strand, within AMB_RS00945at 214.115 kb on + strand, within AMB_RS00945at 214.115 kb on + strand, within AMB_RS00945at 214.115 kb on + strand, within AMB_RS00945at 214.115 kb on + strand, within AMB_RS00945at 214.115 kb on + strand, within AMB_RS00945at 214.115 kb on + strand, within AMB_RS00945at 214.115 kb on + strand, within AMB_RS00945at 214.115 kb on + strand, within AMB_RS00945at 214.115 kb on + strand, within AMB_RS00945at 214.116 kb on - strand, within AMB_RS00945at 214.116 kb on - strand, within AMB_RS00945at 214.116 kb on - strand, within AMB_RS00945at 214.116 kb on - strand, within AMB_RS00945at 214.116 kb on - strand, within AMB_RS00945at 214.116 kb on - strand, within AMB_RS00945at 214.116 kb on - strand, within AMB_RS00945at 214.249 kb on + strand, within AMB_RS00945at 214.282 kb on + strand, within AMB_RS00945at 214.283 kb on - strand, within AMB_RS00945at 214.283 kb on - strand, within AMB_RS00945at 214.424 kb on + strand, within AMB_RS00945at 214.425 kb on - strand, within AMB_RS00945at 214.425 kb on - strand, within AMB_RS00945at 214.425 kb on - strand, within AMB_RS00945at 214.425 kb on - strand, within AMB_RS00945at 214.429 kb on + strand, within AMB_RS00945at 214.430 kb on - strand, within AMB_RS00945at 214.441 kb on + strand, within AMB_RS00945at 214.441 kb on + strand, within AMB_RS00945at 214.441 kb on + strand, within AMB_RS00945at 214.441 kb on + strand, within AMB_RS00945at 214.441 kb on + strand, within AMB_RS00945at 214.441 kb on + strand, within AMB_RS00945at 214.441 kb on + strand, within AMB_RS00945at 214.441 kb on + strand, within AMB_RS00945at 214.441 kb on + strand, within AMB_RS00945at 214.441 kb on + strand, within AMB_RS00945at 214.441 kb on + strand, within AMB_RS00945at 214.441 kb on + strand, within AMB_RS00945at 214.442 kb on - strand, within AMB_RS00945at 214.442 kb on - strand, within AMB_RS00945at 214.442 kb on - strand, within AMB_RS00945at 214.443 kb on + strand, within AMB_RS00945at 214.444 kb on - strand, within AMB_RS00945at 214.444 kb on - strand, within AMB_RS00945at 214.459 kb on + strand, within AMB_RS00945at 214.459 kb on + strand, within AMB_RS00945at 214.459 kb on + strand, within AMB_RS00945at 214.459 kb on + strand, within AMB_RS00945at 214.459 kb on + strand, within AMB_RS00945at 214.459 kb on + strand, within AMB_RS00945at 214.460 kb on - strand, within AMB_RS00945at 214.460 kb on - strand, within AMB_RS00945at 214.460 kb on - strand, within AMB_RS00945at 214.460 kb on - strand, within AMB_RS00945at 214.460 kb on - strand, within AMB_RS00945at 214.460 kb on - strand, within AMB_RS00945at 214.460 kb on - strand, within AMB_RS00945at 214.639 kb on + strand, within AMB_RS00945at 214.639 kb on + strand, within AMB_RS00945at 214.640 kb on - strand, within AMB_RS00945at 214.677 kb on + strand, within AMB_RS00945at 214.677 kb on + strand, within AMB_RS00945at 214.677 kb on + strand, within AMB_RS00945at 214.678 kb on - strand, within AMB_RS00945at 214.678 kb on - strand, within AMB_RS00945at 214.744 kb on + strand, within AMB_RS00945at 214.744 kb on + strand, within AMB_RS00945at 214.744 kb on + strand, within AMB_RS00945at 214.744 kb on + strand, within AMB_RS00945at 214.745 kb on - strand, within AMB_RS00945at 214.745 kb on - strand, within AMB_RS00945at 214.745 kb on - strand, within AMB_RS00945at 214.745 kb on - strand, within AMB_RS00945at 214.745 kb on - strand, within AMB_RS00945at 214.745 kb on - strand, within AMB_RS00945at 214.849 kb on + strandat 214.849 kb on + strandat 215.107 kb on - strand, within AMB_RS00950at 215.107 kb on - strand, within AMB_RS00950at 215.112 kb on + strand, within AMB_RS00950at 215.113 kb on - strand, within AMB_RS00950at 215.113 kb on - strand, within AMB_RS00950at 215.113 kb on - strand, within AMB_RS00950at 215.532 kb on + strand, within AMB_RS00950at 215.532 kb on + strand, within AMB_RS00950at 215.533 kb on - strand, within AMB_RS00950at 215.533 kb on - strand, within AMB_RS00950at 215.533 kb on - strand, within AMB_RS00950at 215.536 kb on - strand, within AMB_RS00950at 215.977 kb on - strand, within AMB_RS00950at 215.977 kb on - strand, within AMB_RS00950at 216.057 kb on + strand, within AMB_RS00950at 216.057 kb on + strand, within AMB_RS00950at 216.058 kb on - strand, within AMB_RS00950at 216.058 kb on - strand, within AMB_RS00950at 216.325 kb on + strand, within AMB_RS00950at 216.325 kb on + strand, within AMB_RS00950at 216.325 kb on + strand, within AMB_RS00950at 216.325 kb on + strand, within AMB_RS00950at 216.325 kb on + strand, within AMB_RS00950at 216.326 kb on - strand, within AMB_RS00950at 216.326 kb on - strand, within AMB_RS00950at 216.326 kb on - strand, within AMB_RS00950at 216.326 kb on - strand, within AMB_RS00950at 216.326 kb on - strand, within AMB_RS00950at 216.326 kb on - strand, within AMB_RS00950at 216.326 kb on - strand, within AMB_RS00950at 216.327 kb on + strand, within AMB_RS00950at 216.327 kb on + strand, within AMB_RS00950at 216.327 kb on + strand, within AMB_RS00950at 216.328 kb on - strand, within AMB_RS00950at 216.328 kb on - strand, within AMB_RS00950at 216.328 kb on - strand, within AMB_RS00950at 216.328 kb on - strand, within AMB_RS00950at 216.328 kb on - strand, within AMB_RS00950at 216.328 kb on - strand, within AMB_RS00950at 216.328 kb on - strand, within AMB_RS00950at 216.328 kb on - strand, within AMB_RS00950at 216.408 kb on + strand, within AMB_RS00950at 216.408 kb on + strand, within AMB_RS00950at 216.409 kb on - strand, within AMB_RS00950at 216.583 kb on + strandat 216.584 kb on - strandat 216.670 kb on + strandat 216.670 kb on + strandat 216.671 kb on - strandat 216.681 kb on + strandat 216.682 kb on - strandat 216.682 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_mag_3
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214,115 + AMB_RS00945 0.24 +1.7
214,115 + AMB_RS00945 0.24 +1.4
214,115 + AMB_RS00945 0.24 +0.3
214,115 + AMB_RS00945 0.24 -0.1
214,115 + AMB_RS00945 0.24 +1.1
214,115 + AMB_RS00945 0.24 +0.6
214,115 + AMB_RS00945 0.24 -0.8
214,115 + AMB_RS00945 0.24 +0.8
214,115 + AMB_RS00945 0.24 -0.3
214,115 + AMB_RS00945 0.24 -0.9
214,115 + AMB_RS00945 0.24 -0.2
214,115 + AMB_RS00945 0.24 +0.9
214,116 - AMB_RS00945 0.24 +0.2
214,116 - AMB_RS00945 0.24 +2.4
214,116 - AMB_RS00945 0.24 +0.3
214,116 - AMB_RS00945 0.24 +0.1
214,116 - AMB_RS00945 0.24 -0.8
214,116 - AMB_RS00945 0.24 -0.1
214,116 - AMB_RS00945 0.24 +0.0
214,249 + AMB_RS00945 0.36 +0.1
214,282 + AMB_RS00945 0.39 +0.6
214,283 - AMB_RS00945 0.40 -0.3
214,283 - AMB_RS00945 0.40 -1.1
214,424 + AMB_RS00945 0.53 -0.1
214,425 - AMB_RS00945 0.53 +0.3
214,425 - AMB_RS00945 0.53 +1.6
214,425 - AMB_RS00945 0.53 +0.3
214,425 - AMB_RS00945 0.53 -0.4
214,429 + AMB_RS00945 0.53 +1.1
214,430 - AMB_RS00945 0.53 +0.1
214,441 + AMB_RS00945 0.54 -0.5
214,441 + AMB_RS00945 0.54 -0.2
214,441 + AMB_RS00945 0.54 +1.1
214,441 + AMB_RS00945 0.54 +1.4
214,441 + AMB_RS00945 0.54 +0.5
214,441 + AMB_RS00945 0.54 -1.0
214,441 + AMB_RS00945 0.54 -0.5
214,441 + AMB_RS00945 0.54 -0.9
214,441 + AMB_RS00945 0.54 +0.4
214,441 + AMB_RS00945 0.54 +1.1
214,441 + AMB_RS00945 0.54 +0.3
214,441 + AMB_RS00945 0.54 -0.1
214,442 - AMB_RS00945 0.54 -0.0
214,442 - AMB_RS00945 0.54 +0.6
214,442 - AMB_RS00945 0.54 -0.2
214,443 + AMB_RS00945 0.55 +0.1
214,444 - AMB_RS00945 0.55 -1.0
214,444 - AMB_RS00945 0.55 -0.1
214,459 + AMB_RS00945 0.56 -0.4
214,459 + AMB_RS00945 0.56 +0.3
214,459 + AMB_RS00945 0.56 +0.0
214,459 + AMB_RS00945 0.56 -0.6
214,459 + AMB_RS00945 0.56 -0.2
214,459 + AMB_RS00945 0.56 +0.1
214,460 - AMB_RS00945 0.56 -1.1
214,460 - AMB_RS00945 0.56 +0.2
214,460 - AMB_RS00945 0.56 -0.1
214,460 - AMB_RS00945 0.56 +0.1
214,460 - AMB_RS00945 0.56 -0.3
214,460 - AMB_RS00945 0.56 +0.8
214,460 - AMB_RS00945 0.56 -0.7
214,639 + AMB_RS00945 0.73 -0.2
214,639 + AMB_RS00945 0.73 +2.0
214,640 - AMB_RS00945 0.73 -0.9
214,677 + AMB_RS00945 0.76 -0.2
214,677 + AMB_RS00945 0.76 -0.7
214,677 + AMB_RS00945 0.76 -0.3
214,678 - AMB_RS00945 0.76 -0.1
214,678 - AMB_RS00945 0.76 -0.6
214,744 + AMB_RS00945 0.83 -0.4
214,744 + AMB_RS00945 0.83 +0.5
214,744 + AMB_RS00945 0.83 -0.0
214,744 + AMB_RS00945 0.83 -0.5
214,745 - AMB_RS00945 0.83 -2.7
214,745 - AMB_RS00945 0.83 +1.3
214,745 - AMB_RS00945 0.83 +2.1
214,745 - AMB_RS00945 0.83 -0.9
214,745 - AMB_RS00945 0.83 -0.6
214,745 - AMB_RS00945 0.83 -0.2
214,849 + +0.1
214,849 + +0.9
215,107 - AMB_RS00950 0.12 +0.3
215,107 - AMB_RS00950 0.12 +0.3
215,112 + AMB_RS00950 0.12 -0.6
215,113 - AMB_RS00950 0.13 +0.4
215,113 - AMB_RS00950 0.13 -2.2
215,113 - AMB_RS00950 0.13 -0.7
215,532 + AMB_RS00950 0.37 +0.1
215,532 + AMB_RS00950 0.37 -0.8
215,533 - AMB_RS00950 0.37 -0.7
215,533 - AMB_RS00950 0.37 -0.5
215,533 - AMB_RS00950 0.37 -0.2
215,536 - AMB_RS00950 0.38 +0.5
215,977 - AMB_RS00950 0.64 -0.3
215,977 - AMB_RS00950 0.64 -0.4
216,057 + AMB_RS00950 0.68 -0.4
216,057 + AMB_RS00950 0.68 -0.4
216,058 - AMB_RS00950 0.68 -0.2
216,058 - AMB_RS00950 0.68 +0.1
216,325 + AMB_RS00950 0.84 -0.6
216,325 + AMB_RS00950 0.84 +0.6
216,325 + AMB_RS00950 0.84 +2.4
216,325 + AMB_RS00950 0.84 +0.2
216,325 + AMB_RS00950 0.84 -0.1
216,326 - AMB_RS00950 0.84 -1.1
216,326 - AMB_RS00950 0.84 -0.7
216,326 - AMB_RS00950 0.84 -0.3
216,326 - AMB_RS00950 0.84 -0.3
216,326 - AMB_RS00950 0.84 +0.1
216,326 - AMB_RS00950 0.84 -0.4
216,326 - AMB_RS00950 0.84 +0.3
216,327 + AMB_RS00950 0.84 -0.2
216,327 + AMB_RS00950 0.84 -0.2
216,327 + AMB_RS00950 0.84 -0.6
216,328 - AMB_RS00950 0.84 -0.1
216,328 - AMB_RS00950 0.84 +0.9
216,328 - AMB_RS00950 0.84 +0.2
216,328 - AMB_RS00950 0.84 +0.7
216,328 - AMB_RS00950 0.84 -0.9
216,328 - AMB_RS00950 0.84 +0.0
216,328 - AMB_RS00950 0.84 +0.7
216,328 - AMB_RS00950 0.84 +0.3
216,408 + AMB_RS00950 0.89 +0.1
216,408 + AMB_RS00950 0.89 -0.2
216,409 - AMB_RS00950 0.89 +0.7
216,583 + +0.1
216,584 - -0.3
216,670 + -2.9
216,670 + -1.3
216,671 - -0.7
216,681 + +0.8
216,682 - -0.3
216,682 - +2.7

Or see this region's nucleotide sequence