Experiment: 150_mag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS00935 and AMB_RS00940 are separated by 10 nucleotides AMB_RS00940 and AMB_RS00945 overlap by 59 nucleotides AMB_RS00945 and AMB_RS00950 overlap by 29 nucleotides
AMB_RS00935: AMB_RS00935 - methyl-accepting chemotaxis protein, at 212,045 to 213,376
_RS00935
AMB_RS00940: AMB_RS00940 - PAS domain S-box protein, at 213,387 to 213,917
_RS00940
AMB_RS00945: AMB_RS00945 - hypothetical protein, at 213,859 to 214,929
_RS00945
AMB_RS00950: AMB_RS00950 - Serine phosphatase RsbU, at 214,901 to 216,592
_RS00950
Position (kb) 213
214
215 Strain fitness (log2 ratio) -2
-1
0
1
2 at 212.916 kb on + strand, within AMB_RS00935 at 212.916 kb on + strand, within AMB_RS00935 at 212.916 kb on + strand, within AMB_RS00935 at 212.917 kb on - strand, within AMB_RS00935 at 212.917 kb on - strand, within AMB_RS00935 at 212.917 kb on - strand, within AMB_RS00935 at 212.917 kb on - strand, within AMB_RS00935 at 212.955 kb on + strand, within AMB_RS00935 at 212.955 kb on + strand, within AMB_RS00935 at 212.956 kb on - strand, within AMB_RS00935 at 212.964 kb on + strand, within AMB_RS00935 at 212.965 kb on - strand, within AMB_RS00935 at 212.965 kb on - strand, within AMB_RS00935 at 213.388 kb on + strand at 213.418 kb on + strand at 213.418 kb on + strand at 213.418 kb on + strand at 213.418 kb on + strand at 213.419 kb on - strand at 213.419 kb on - strand at 213.419 kb on - strand at 213.419 kb on - strand at 213.419 kb on - strand at 213.419 kb on - strand at 213.419 kb on - strand at 213.419 kb on - strand at 213.419 kb on - strand at 213.419 kb on - strand at 213.419 kb on - strand at 213.526 kb on + strand, within AMB_RS00940 at 213.526 kb on + strand, within AMB_RS00940 at 213.526 kb on + strand, within AMB_RS00940 at 213.526 kb on + strand, within AMB_RS00940 at 213.526 kb on + strand, within AMB_RS00940 at 213.584 kb on - strand, within AMB_RS00940 at 213.584 kb on - strand, within AMB_RS00940 at 213.584 kb on - strand, within AMB_RS00940 at 213.611 kb on - strand, within AMB_RS00940 at 213.611 kb on - strand, within AMB_RS00940 at 213.611 kb on - strand, within AMB_RS00940 at 213.621 kb on + strand, within AMB_RS00940 at 213.621 kb on + strand, within AMB_RS00940 at 213.621 kb on + strand, within AMB_RS00940 at 213.622 kb on - strand, within AMB_RS00940 at 213.622 kb on - strand, within AMB_RS00940 at 213.622 kb on - strand, within AMB_RS00940 at 213.673 kb on + strand, within AMB_RS00940 at 213.673 kb on + strand, within AMB_RS00940 at 213.673 kb on + strand, within AMB_RS00940 at 213.673 kb on + strand, within AMB_RS00940 at 213.673 kb on + strand, within AMB_RS00940 at 213.674 kb on - strand, within AMB_RS00940 at 213.674 kb on - strand, within AMB_RS00940 at 213.674 kb on - strand, within AMB_RS00940 at 213.674 kb on - strand, within AMB_RS00940 at 213.790 kb on + strand, within AMB_RS00940 at 213.791 kb on - strand, within AMB_RS00940 at 213.823 kb on + strand, within AMB_RS00940 at 213.827 kb on + strand, within AMB_RS00940 at 213.828 kb on - strand, within AMB_RS00940 at 214.115 kb on + strand, within AMB_RS00945 at 214.115 kb on + strand, within AMB_RS00945 at 214.115 kb on + strand, within AMB_RS00945 at 214.115 kb on + strand, within AMB_RS00945 at 214.115 kb on + strand, within AMB_RS00945 at 214.115 kb on + strand, within AMB_RS00945 at 214.115 kb on + strand, within AMB_RS00945 at 214.115 kb on + strand, within AMB_RS00945 at 214.115 kb on + strand, within AMB_RS00945 at 214.115 kb on + strand, within AMB_RS00945 at 214.115 kb on + strand, within AMB_RS00945 at 214.115 kb on + strand, within AMB_RS00945 at 214.116 kb on - strand, within AMB_RS00945 at 214.116 kb on - strand, within AMB_RS00945 at 214.116 kb on - strand, within AMB_RS00945 at 214.116 kb on - strand, within AMB_RS00945 at 214.116 kb on - strand, within AMB_RS00945 at 214.116 kb on - strand, within AMB_RS00945 at 214.116 kb on - strand, within AMB_RS00945 at 214.249 kb on + strand, within AMB_RS00945 at 214.282 kb on + strand, within AMB_RS00945 at 214.283 kb on - strand, within AMB_RS00945 at 214.283 kb on - strand, within AMB_RS00945 at 214.424 kb on + strand, within AMB_RS00945 at 214.425 kb on - strand, within AMB_RS00945 at 214.425 kb on - strand, within AMB_RS00945 at 214.425 kb on - strand, within AMB_RS00945 at 214.425 kb on - strand, within AMB_RS00945 at 214.429 kb on + strand, within AMB_RS00945 at 214.430 kb on - strand, within AMB_RS00945 at 214.441 kb on + strand, within AMB_RS00945 at 214.441 kb on + strand, within AMB_RS00945 at 214.441 kb on + strand, within AMB_RS00945 at 214.441 kb on + strand, within AMB_RS00945 at 214.441 kb on + strand, within AMB_RS00945 at 214.441 kb on + strand, within AMB_RS00945 at 214.441 kb on + strand, within AMB_RS00945 at 214.441 kb on + strand, within AMB_RS00945 at 214.441 kb on + strand, within AMB_RS00945 at 214.441 kb on + strand, within AMB_RS00945 at 214.441 kb on + strand, within AMB_RS00945 at 214.441 kb on + strand, within AMB_RS00945 at 214.442 kb on - strand, within AMB_RS00945 at 214.442 kb on - strand, within AMB_RS00945 at 214.442 kb on - strand, within AMB_RS00945 at 214.443 kb on + strand, within AMB_RS00945 at 214.444 kb on - strand, within AMB_RS00945 at 214.444 kb on - strand, within AMB_RS00945 at 214.459 kb on + strand, within AMB_RS00945 at 214.459 kb on + strand, within AMB_RS00945 at 214.459 kb on + strand, within AMB_RS00945 at 214.459 kb on + strand, within AMB_RS00945 at 214.459 kb on + strand, within AMB_RS00945 at 214.459 kb on + strand, within AMB_RS00945 at 214.460 kb on - strand, within AMB_RS00945 at 214.460 kb on - strand, within AMB_RS00945 at 214.460 kb on - strand, within AMB_RS00945 at 214.460 kb on - strand, within AMB_RS00945 at 214.460 kb on - strand, within AMB_RS00945 at 214.460 kb on - strand, within AMB_RS00945 at 214.460 kb on - strand, within AMB_RS00945 at 214.639 kb on + strand, within AMB_RS00945 at 214.639 kb on + strand, within AMB_RS00945 at 214.640 kb on - strand, within AMB_RS00945 at 214.677 kb on + strand, within AMB_RS00945 at 214.677 kb on + strand, within AMB_RS00945 at 214.677 kb on + strand, within AMB_RS00945 at 214.678 kb on - strand, within AMB_RS00945 at 214.678 kb on - strand, within AMB_RS00945 at 214.744 kb on + strand, within AMB_RS00945 at 214.744 kb on + strand, within AMB_RS00945 at 214.744 kb on + strand, within AMB_RS00945 at 214.744 kb on + strand, within AMB_RS00945 at 214.745 kb on - strand, within AMB_RS00945 at 214.745 kb on - strand, within AMB_RS00945 at 214.745 kb on - strand, within AMB_RS00945 at 214.745 kb on - strand, within AMB_RS00945 at 214.745 kb on - strand, within AMB_RS00945 at 214.745 kb on - strand, within AMB_RS00945 at 214.849 kb on + strand at 214.849 kb on + strand at 215.107 kb on - strand, within AMB_RS00950 at 215.107 kb on - strand, within AMB_RS00950 at 215.112 kb on + strand, within AMB_RS00950 at 215.113 kb on - strand, within AMB_RS00950 at 215.113 kb on - strand, within AMB_RS00950 at 215.113 kb on - strand, within AMB_RS00950 at 215.532 kb on + strand, within AMB_RS00950 at 215.532 kb on + strand, within AMB_RS00950 at 215.533 kb on - strand, within AMB_RS00950 at 215.533 kb on - strand, within AMB_RS00950 at 215.533 kb on - strand, within AMB_RS00950 at 215.536 kb on - strand, within AMB_RS00950
Per-strain Table
Position Strand Gene LocusTag Fraction 150_mag_3 remove 212,916 + AMB_RS00935 0.65 -0.3 212,916 + AMB_RS00935 0.65 -0.8 212,916 + AMB_RS00935 0.65 -1.2 212,917 - AMB_RS00935 0.65 -1.2 212,917 - AMB_RS00935 0.65 -0.1 212,917 - AMB_RS00935 0.65 -0.0 212,917 - AMB_RS00935 0.65 +0.4 212,955 + AMB_RS00935 0.68 +0.1 212,955 + AMB_RS00935 0.68 +0.5 212,956 - AMB_RS00935 0.68 -0.2 212,964 + AMB_RS00935 0.69 +0.1 212,965 - AMB_RS00935 0.69 -0.6 212,965 - AMB_RS00935 0.69 +0.1 213,388 + +2.0 213,418 + +1.6 213,418 + +1.9 213,418 + +0.5 213,418 + +0.3 213,419 - -0.5 213,419 - +0.1 213,419 - -0.6 213,419 - -1.5 213,419 - -0.2 213,419 - +0.5 213,419 - +0.3 213,419 - -0.5 213,419 - -0.7 213,419 - +1.1 213,419 - -0.1 213,526 + AMB_RS00940 0.26 -0.1 213,526 + AMB_RS00940 0.26 -0.5 213,526 + AMB_RS00940 0.26 -1.6 213,526 + AMB_RS00940 0.26 -0.6 213,526 + AMB_RS00940 0.26 -0.5 213,584 - AMB_RS00940 0.37 +0.4 213,584 - AMB_RS00940 0.37 +0.3 213,584 - AMB_RS00940 0.37 -0.8 213,611 - AMB_RS00940 0.42 -0.4 213,611 - AMB_RS00940 0.42 +1.0 213,611 - AMB_RS00940 0.42 -0.6 213,621 + AMB_RS00940 0.44 -0.2 213,621 + AMB_RS00940 0.44 -0.5 213,621 + AMB_RS00940 0.44 -0.5 213,622 - AMB_RS00940 0.44 -0.4 213,622 - AMB_RS00940 0.44 -0.8 213,622 - AMB_RS00940 0.44 +0.1 213,673 + AMB_RS00940 0.54 +0.5 213,673 + AMB_RS00940 0.54 +1.9 213,673 + AMB_RS00940 0.54 +1.6 213,673 + AMB_RS00940 0.54 -2.1 213,673 + AMB_RS00940 0.54 -0.3 213,674 - AMB_RS00940 0.54 +0.1 213,674 - AMB_RS00940 0.54 -0.0 213,674 - AMB_RS00940 0.54 -1.4 213,674 - AMB_RS00940 0.54 -0.9 213,790 + AMB_RS00940 0.76 -0.3 213,791 - AMB_RS00940 0.76 -0.2 213,823 + AMB_RS00940 0.82 -0.0 213,827 + AMB_RS00940 0.83 +0.1 213,828 - AMB_RS00940 0.83 +0.1 214,115 + AMB_RS00945 0.24 +1.7 214,115 + AMB_RS00945 0.24 +1.4 214,115 + AMB_RS00945 0.24 +0.3 214,115 + AMB_RS00945 0.24 -0.1 214,115 + AMB_RS00945 0.24 +1.1 214,115 + AMB_RS00945 0.24 +0.6 214,115 + AMB_RS00945 0.24 -0.8 214,115 + AMB_RS00945 0.24 +0.8 214,115 + AMB_RS00945 0.24 -0.3 214,115 + AMB_RS00945 0.24 -0.9 214,115 + AMB_RS00945 0.24 -0.2 214,115 + AMB_RS00945 0.24 +0.9 214,116 - AMB_RS00945 0.24 +0.2 214,116 - AMB_RS00945 0.24 +2.4 214,116 - AMB_RS00945 0.24 +0.3 214,116 - AMB_RS00945 0.24 +0.1 214,116 - AMB_RS00945 0.24 -0.8 214,116 - AMB_RS00945 0.24 -0.1 214,116 - AMB_RS00945 0.24 +0.0 214,249 + AMB_RS00945 0.36 +0.1 214,282 + AMB_RS00945 0.39 +0.6 214,283 - AMB_RS00945 0.40 -0.3 214,283 - AMB_RS00945 0.40 -1.1 214,424 + AMB_RS00945 0.53 -0.1 214,425 - AMB_RS00945 0.53 +0.3 214,425 - AMB_RS00945 0.53 +1.6 214,425 - AMB_RS00945 0.53 +0.3 214,425 - AMB_RS00945 0.53 -0.4 214,429 + AMB_RS00945 0.53 +1.1 214,430 - AMB_RS00945 0.53 +0.1 214,441 + AMB_RS00945 0.54 -0.5 214,441 + AMB_RS00945 0.54 -0.2 214,441 + AMB_RS00945 0.54 +1.1 214,441 + AMB_RS00945 0.54 +1.4 214,441 + AMB_RS00945 0.54 +0.5 214,441 + AMB_RS00945 0.54 -1.0 214,441 + AMB_RS00945 0.54 -0.5 214,441 + AMB_RS00945 0.54 -0.9 214,441 + AMB_RS00945 0.54 +0.4 214,441 + AMB_RS00945 0.54 +1.1 214,441 + AMB_RS00945 0.54 +0.3 214,441 + AMB_RS00945 0.54 -0.1 214,442 - AMB_RS00945 0.54 -0.0 214,442 - AMB_RS00945 0.54 +0.6 214,442 - AMB_RS00945 0.54 -0.2 214,443 + AMB_RS00945 0.55 +0.1 214,444 - AMB_RS00945 0.55 -1.0 214,444 - AMB_RS00945 0.55 -0.1 214,459 + AMB_RS00945 0.56 -0.4 214,459 + AMB_RS00945 0.56 +0.3 214,459 + AMB_RS00945 0.56 +0.0 214,459 + AMB_RS00945 0.56 -0.6 214,459 + AMB_RS00945 0.56 -0.2 214,459 + AMB_RS00945 0.56 +0.1 214,460 - AMB_RS00945 0.56 -1.1 214,460 - AMB_RS00945 0.56 +0.2 214,460 - AMB_RS00945 0.56 -0.1 214,460 - AMB_RS00945 0.56 +0.1 214,460 - AMB_RS00945 0.56 -0.3 214,460 - AMB_RS00945 0.56 +0.8 214,460 - AMB_RS00945 0.56 -0.7 214,639 + AMB_RS00945 0.73 -0.2 214,639 + AMB_RS00945 0.73 +2.0 214,640 - AMB_RS00945 0.73 -0.9 214,677 + AMB_RS00945 0.76 -0.2 214,677 + AMB_RS00945 0.76 -0.7 214,677 + AMB_RS00945 0.76 -0.3 214,678 - AMB_RS00945 0.76 -0.1 214,678 - AMB_RS00945 0.76 -0.6 214,744 + AMB_RS00945 0.83 -0.4 214,744 + AMB_RS00945 0.83 +0.5 214,744 + AMB_RS00945 0.83 -0.0 214,744 + AMB_RS00945 0.83 -0.5 214,745 - AMB_RS00945 0.83 -2.7 214,745 - AMB_RS00945 0.83 +1.3 214,745 - AMB_RS00945 0.83 +2.1 214,745 - AMB_RS00945 0.83 -0.9 214,745 - AMB_RS00945 0.83 -0.6 214,745 - AMB_RS00945 0.83 -0.2 214,849 + +0.1 214,849 + +0.9 215,107 - AMB_RS00950 0.12 +0.3 215,107 - AMB_RS00950 0.12 +0.3 215,112 + AMB_RS00950 0.12 -0.6 215,113 - AMB_RS00950 0.13 +0.4 215,113 - AMB_RS00950 0.13 -2.2 215,113 - AMB_RS00950 0.13 -0.7 215,532 + AMB_RS00950 0.37 +0.1 215,532 + AMB_RS00950 0.37 -0.8 215,533 - AMB_RS00950 0.37 -0.7 215,533 - AMB_RS00950 0.37 -0.5 215,533 - AMB_RS00950 0.37 -0.2 215,536 - AMB_RS00950 0.38 +0.5
Or see this region's nucleotide sequence