Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS00915

Experiment: 150_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS00910 and AMB_RS00915 overlap by 4 nucleotidesAMB_RS00915 and AMB_RS00920 are separated by 40 nucleotidesAMB_RS00920 and AMB_RS00925 overlap by 4 nucleotides AMB_RS00910: AMB_RS00910 - indolepyruvate ferredoxin subunit alpha, at 205,242 to 207,341 _RS00910 AMB_RS00915: AMB_RS00915 - indolepyruvate oxidoreductase subunit B, at 207,338 to 208,846 _RS00915 AMB_RS00920: AMB_RS00920 - secretion protein HlyD, at 208,887 to 209,828 _RS00920 AMB_RS00925: AMB_RS00925 - ABC transporter ATP-binding protein, at 209,825 to 210,751 _RS00925 Position (kb) 207 208 209Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 206.754 kb on + strand, within AMB_RS00910at 206.755 kb on - strand, within AMB_RS00910at 206.755 kb on - strand, within AMB_RS00910at 206.756 kb on + strand, within AMB_RS00910at 206.756 kb on + strand, within AMB_RS00910at 206.756 kb on + strand, within AMB_RS00910at 206.756 kb on + strand, within AMB_RS00910at 206.756 kb on + strand, within AMB_RS00910at 206.756 kb on + strand, within AMB_RS00910at 206.757 kb on - strand, within AMB_RS00910at 206.757 kb on - strand, within AMB_RS00910at 206.757 kb on - strand, within AMB_RS00910at 206.778 kb on + strand, within AMB_RS00910at 206.778 kb on + strand, within AMB_RS00910at 206.778 kb on + strand, within AMB_RS00910at 206.778 kb on + strand, within AMB_RS00910at 206.778 kb on + strand, within AMB_RS00910at 206.778 kb on + strand, within AMB_RS00910at 206.778 kb on + strand, within AMB_RS00910at 206.778 kb on + strand, within AMB_RS00910at 206.778 kb on + strand, within AMB_RS00910at 206.778 kb on + strand, within AMB_RS00910at 206.778 kb on + strand, within AMB_RS00910at 206.778 kb on + strand, within AMB_RS00910at 206.778 kb on + strand, within AMB_RS00910at 206.778 kb on + strand, within AMB_RS00910at 206.778 kb on + strand, within AMB_RS00910at 206.778 kb on + strand, within AMB_RS00910at 206.778 kb on + strand, within AMB_RS00910at 206.778 kb on + strand, within AMB_RS00910at 206.778 kb on + strand, within AMB_RS00910at 206.778 kb on + strand, within AMB_RS00910at 206.778 kb on + strand, within AMB_RS00910at 206.778 kb on + strand, within AMB_RS00910at 206.779 kb on - strand, within AMB_RS00910at 206.779 kb on - strand, within AMB_RS00910at 206.779 kb on - strand, within AMB_RS00910at 206.779 kb on - strand, within AMB_RS00910at 206.779 kb on - strand, within AMB_RS00910at 206.779 kb on - strand, within AMB_RS00910at 206.779 kb on - strand, within AMB_RS00910at 206.779 kb on - strand, within AMB_RS00910at 206.779 kb on - strand, within AMB_RS00910at 206.779 kb on - strand, within AMB_RS00910at 206.779 kb on - strand, within AMB_RS00910at 206.779 kb on - strand, within AMB_RS00910at 206.779 kb on - strand, within AMB_RS00910at 206.779 kb on - strand, within AMB_RS00910at 206.779 kb on - strand, within AMB_RS00910at 206.779 kb on - strand, within AMB_RS00910at 206.779 kb on - strand, within AMB_RS00910at 206.779 kb on - strand, within AMB_RS00910at 206.779 kb on - strand, within AMB_RS00910at 206.779 kb on - strand, within AMB_RS00910at 206.779 kb on - strand, within AMB_RS00910at 206.779 kb on - strand, within AMB_RS00910at 206.779 kb on - strand, within AMB_RS00910at 206.779 kb on - strand, within AMB_RS00910at 206.779 kb on - strand, within AMB_RS00910at 206.779 kb on - strand, within AMB_RS00910at 206.883 kb on + strand, within AMB_RS00910at 206.884 kb on - strand, within AMB_RS00910at 206.884 kb on - strand, within AMB_RS00910at 207.052 kb on - strand, within AMB_RS00910at 207.493 kb on + strand, within AMB_RS00915at 207.493 kb on + strand, within AMB_RS00915at 207.493 kb on + strand, within AMB_RS00915at 207.494 kb on - strand, within AMB_RS00915at 207.494 kb on - strand, within AMB_RS00915at 207.494 kb on - strand, within AMB_RS00915at 207.494 kb on - strand, within AMB_RS00915at 207.494 kb on - strand, within AMB_RS00915at 207.497 kb on + strand, within AMB_RS00915at 207.497 kb on + strand, within AMB_RS00915at 207.497 kb on + strand, within AMB_RS00915at 207.497 kb on + strand, within AMB_RS00915at 207.497 kb on + strand, within AMB_RS00915at 207.497 kb on + strand, within AMB_RS00915at 207.498 kb on - strand, within AMB_RS00915at 207.498 kb on - strand, within AMB_RS00915at 207.498 kb on - strand, within AMB_RS00915at 207.498 kb on - strand, within AMB_RS00915at 207.498 kb on - strand, within AMB_RS00915at 207.498 kb on - strand, within AMB_RS00915at 207.498 kb on - strand, within AMB_RS00915at 207.498 kb on - strand, within AMB_RS00915at 207.498 kb on - strand, within AMB_RS00915at 207.498 kb on - strand, within AMB_RS00915at 207.498 kb on - strand, within AMB_RS00915at 207.498 kb on - strand, within AMB_RS00915at 207.498 kb on - strand, within AMB_RS00915at 207.498 kb on - strand, within AMB_RS00915at 207.500 kb on + strand, within AMB_RS00915at 207.500 kb on + strand, within AMB_RS00915at 207.500 kb on + strand, within AMB_RS00915at 207.500 kb on + strand, within AMB_RS00915at 207.500 kb on + strand, within AMB_RS00915at 207.500 kb on + strand, within AMB_RS00915at 207.501 kb on - strand, within AMB_RS00915at 207.501 kb on - strand, within AMB_RS00915at 208.109 kb on + strand, within AMB_RS00915at 208.109 kb on + strand, within AMB_RS00915at 208.125 kb on - strand, within AMB_RS00915at 208.136 kb on + strand, within AMB_RS00915at 208.605 kb on + strand, within AMB_RS00915at 208.605 kb on + strand, within AMB_RS00915at 208.646 kb on + strand, within AMB_RS00915at 208.959 kb on + strandat 208.960 kb on - strandat 208.960 kb on - strandat 208.974 kb on + strandat 208.974 kb on + strandat 208.975 kb on - strandat 208.975 kb on - strandat 208.975 kb on - strandat 208.975 kb on - strandat 208.975 kb on - strandat 208.975 kb on - strandat 209.269 kb on - strand, within AMB_RS00920at 209.269 kb on - strand, within AMB_RS00920at 209.269 kb on - strand, within AMB_RS00920at 209.269 kb on - strand, within AMB_RS00920at 209.269 kb on - strand, within AMB_RS00920at 209.499 kb on + strand, within AMB_RS00920at 209.499 kb on + strand, within AMB_RS00920at 209.499 kb on + strand, within AMB_RS00920at 209.500 kb on - strand, within AMB_RS00920at 209.631 kb on + strand, within AMB_RS00920at 209.631 kb on + strand, within AMB_RS00920at 209.694 kb on + strand, within AMB_RS00920at 209.695 kb on - strand, within AMB_RS00920at 209.712 kb on + strand, within AMB_RS00920at 209.712 kb on + strand, within AMB_RS00920at 209.712 kb on + strand, within AMB_RS00920at 209.712 kb on + strand, within AMB_RS00920at 209.713 kb on - strand, within AMB_RS00920at 209.713 kb on - strand, within AMB_RS00920at 209.786 kb on + strandat 209.786 kb on + strandat 209.787 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_mag_3
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206,754 + AMB_RS00910 0.72 -0.7
206,755 - AMB_RS00910 0.72 -1.1
206,755 - AMB_RS00910 0.72 -0.6
206,756 + AMB_RS00910 0.72 +0.0
206,756 + AMB_RS00910 0.72 -1.9
206,756 + AMB_RS00910 0.72 -1.2
206,756 + AMB_RS00910 0.72 -0.8
206,756 + AMB_RS00910 0.72 +0.1
206,756 + AMB_RS00910 0.72 -0.8
206,757 - AMB_RS00910 0.72 -1.3
206,757 - AMB_RS00910 0.72 -0.8
206,757 - AMB_RS00910 0.72 -2.1
206,778 + AMB_RS00910 0.73 -0.7
206,778 + AMB_RS00910 0.73 -0.3
206,778 + AMB_RS00910 0.73 -1.0
206,778 + AMB_RS00910 0.73 -0.2
206,778 + AMB_RS00910 0.73 +1.1
206,778 + AMB_RS00910 0.73 -0.5
206,778 + AMB_RS00910 0.73 -0.9
206,778 + AMB_RS00910 0.73 -0.5
206,778 + AMB_RS00910 0.73 -0.1
206,778 + AMB_RS00910 0.73 -0.5
206,778 + AMB_RS00910 0.73 -1.6
206,778 + AMB_RS00910 0.73 -1.1
206,778 + AMB_RS00910 0.73 -1.1
206,778 + AMB_RS00910 0.73 -0.5
206,778 + AMB_RS00910 0.73 -0.0
206,778 + AMB_RS00910 0.73 -0.9
206,778 + AMB_RS00910 0.73 -1.2
206,778 + AMB_RS00910 0.73 -1.2
206,778 + AMB_RS00910 0.73 -1.1
206,778 + AMB_RS00910 0.73 -0.1
206,778 + AMB_RS00910 0.73 -1.3
206,778 + AMB_RS00910 0.73 -1.0
206,779 - AMB_RS00910 0.73 -0.7
206,779 - AMB_RS00910 0.73 -0.8
206,779 - AMB_RS00910 0.73 -0.4
206,779 - AMB_RS00910 0.73 +0.1
206,779 - AMB_RS00910 0.73 -1.0
206,779 - AMB_RS00910 0.73 -0.7
206,779 - AMB_RS00910 0.73 -1.5
206,779 - AMB_RS00910 0.73 +0.2
206,779 - AMB_RS00910 0.73 -0.5
206,779 - AMB_RS00910 0.73 +0.7
206,779 - AMB_RS00910 0.73 -1.0
206,779 - AMB_RS00910 0.73 -1.1
206,779 - AMB_RS00910 0.73 -0.2
206,779 - AMB_RS00910 0.73 -0.8
206,779 - AMB_RS00910 0.73 -0.9
206,779 - AMB_RS00910 0.73 -1.1
206,779 - AMB_RS00910 0.73 -1.1
206,779 - AMB_RS00910 0.73 -0.5
206,779 - AMB_RS00910 0.73 -0.8
206,779 - AMB_RS00910 0.73 -2.2
206,779 - AMB_RS00910 0.73 -1.0
206,779 - AMB_RS00910 0.73 -0.9
206,779 - AMB_RS00910 0.73 -0.3
206,779 - AMB_RS00910 0.73 -0.9
206,779 - AMB_RS00910 0.73 -0.1
206,779 - AMB_RS00910 0.73 -1.2
206,883 + AMB_RS00910 0.78 -0.7
206,884 - AMB_RS00910 0.78 -0.3
206,884 - AMB_RS00910 0.78 -0.7
207,052 - AMB_RS00910 0.86 -1.0
207,493 + AMB_RS00915 0.10 +0.7
207,493 + AMB_RS00915 0.10 -0.4
207,493 + AMB_RS00915 0.10 -0.7
207,494 - AMB_RS00915 0.10 -1.7
207,494 - AMB_RS00915 0.10 -0.8
207,494 - AMB_RS00915 0.10 -1.0
207,494 - AMB_RS00915 0.10 +0.1
207,494 - AMB_RS00915 0.10 -0.2
207,497 + AMB_RS00915 0.11 -0.9
207,497 + AMB_RS00915 0.11 -0.6
207,497 + AMB_RS00915 0.11 -1.3
207,497 + AMB_RS00915 0.11 -0.5
207,497 + AMB_RS00915 0.11 -0.6
207,497 + AMB_RS00915 0.11 -0.8
207,498 - AMB_RS00915 0.11 -0.5
207,498 - AMB_RS00915 0.11 -2.6
207,498 - AMB_RS00915 0.11 -0.7
207,498 - AMB_RS00915 0.11 +0.6
207,498 - AMB_RS00915 0.11 -0.7
207,498 - AMB_RS00915 0.11 -2.0
207,498 - AMB_RS00915 0.11 -1.4
207,498 - AMB_RS00915 0.11 -2.8
207,498 - AMB_RS00915 0.11 -2.1
207,498 - AMB_RS00915 0.11 -0.1
207,498 - AMB_RS00915 0.11 -1.5
207,498 - AMB_RS00915 0.11 -0.4
207,498 - AMB_RS00915 0.11 -1.1
207,498 - AMB_RS00915 0.11 -0.2
207,500 + AMB_RS00915 0.11 -0.5
207,500 + AMB_RS00915 0.11 -1.0
207,500 + AMB_RS00915 0.11 -1.4
207,500 + AMB_RS00915 0.11 -0.8
207,500 + AMB_RS00915 0.11 -0.8
207,500 + AMB_RS00915 0.11 -2.1
207,501 - AMB_RS00915 0.11 -1.6
207,501 - AMB_RS00915 0.11 -0.1
208,109 + AMB_RS00915 0.51 -0.8
208,109 + AMB_RS00915 0.51 +0.1
208,125 - AMB_RS00915 0.52 -0.9
208,136 + AMB_RS00915 0.53 -1.1
208,605 + AMB_RS00915 0.84 +0.1
208,605 + AMB_RS00915 0.84 +0.3
208,646 + AMB_RS00915 0.87 +0.4
208,959 + -0.7
208,960 - -0.3
208,960 - -0.0
208,974 + -0.1
208,974 + -0.6
208,975 - +0.7
208,975 - +0.1
208,975 - +0.2
208,975 - -0.1
208,975 - +0.1
208,975 - +0.1
209,269 - AMB_RS00920 0.41 -1.4
209,269 - AMB_RS00920 0.41 +0.8
209,269 - AMB_RS00920 0.41 -0.3
209,269 - AMB_RS00920 0.41 -0.6
209,269 - AMB_RS00920 0.41 +1.7
209,499 + AMB_RS00920 0.65 -0.3
209,499 + AMB_RS00920 0.65 -0.2
209,499 + AMB_RS00920 0.65 -0.2
209,500 - AMB_RS00920 0.65 +0.4
209,631 + AMB_RS00920 0.79 +0.0
209,631 + AMB_RS00920 0.79 -0.8
209,694 + AMB_RS00920 0.86 -0.2
209,695 - AMB_RS00920 0.86 -3.2
209,712 + AMB_RS00920 0.88 -0.2
209,712 + AMB_RS00920 0.88 +2.1
209,712 + AMB_RS00920 0.88 -0.6
209,712 + AMB_RS00920 0.88 -0.2
209,713 - AMB_RS00920 0.88 -0.2
209,713 - AMB_RS00920 0.88 -0.6
209,786 + +0.1
209,786 + -0.0
209,787 - +0.4

Or see this region's nucleotide sequence