Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS00910

Experiment: 150_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS00900 and AMB_RS00905 overlap by 4 nucleotidesAMB_RS00905 and AMB_RS00910 are separated by 52 nucleotidesAMB_RS00910 and AMB_RS00915 overlap by 4 nucleotides AMB_RS00900: AMB_RS00900 - acyl-CoA thioesterase, at 203,931 to 204,407 _RS00900 AMB_RS00905: AMB_RS00905 - 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase, at 204,404 to 205,189 _RS00905 AMB_RS00910: AMB_RS00910 - indolepyruvate ferredoxin subunit alpha, at 205,242 to 207,341 _RS00910 AMB_RS00915: AMB_RS00915 - indolepyruvate oxidoreductase subunit B, at 207,338 to 208,846 _RS00915 Position (kb) 205 206 207 208Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 204.375 kb on + strandat 204.375 kb on + strandat 204.375 kb on + strandat 204.376 kb on - strandat 204.376 kb on - strandat 204.662 kb on + strand, within AMB_RS00905at 204.662 kb on + strand, within AMB_RS00905at 204.663 kb on - strand, within AMB_RS00905at 204.663 kb on - strand, within AMB_RS00905at 204.664 kb on + strand, within AMB_RS00905at 205.066 kb on + strand, within AMB_RS00905at 205.131 kb on - strandat 205.211 kb on + strandat 205.212 kb on - strandat 205.212 kb on - strandat 205.359 kb on + strandat 205.359 kb on + strandat 205.359 kb on + strandat 205.359 kb on + strandat 205.359 kb on + strandat 205.359 kb on + strandat 205.359 kb on + strandat 205.359 kb on + strandat 205.359 kb on + strandat 205.359 kb on + strandat 205.360 kb on - strandat 205.360 kb on - strandat 205.360 kb on - strandat 205.360 kb on - strandat 205.360 kb on - strandat 205.360 kb on - strandat 205.360 kb on - strandat 205.360 kb on - strandat 205.360 kb on - strandat 205.372 kb on - strandat 205.629 kb on + strand, within AMB_RS00910at 205.629 kb on + strand, within AMB_RS00910at 205.630 kb on - strand, within AMB_RS00910at 205.733 kb on + strand, within AMB_RS00910at 205.733 kb on + strand, within AMB_RS00910at 205.734 kb on - strand, within AMB_RS00910at 205.734 kb on - strand, within AMB_RS00910at 205.734 kb on - strand, within AMB_RS00910at 205.734 kb on - strand, within AMB_RS00910at 205.734 kb on - strand, within AMB_RS00910at 205.734 kb on - strand, within AMB_RS00910at 205.734 kb on - strand, within AMB_RS00910at 206.040 kb on + strand, within AMB_RS00910at 206.040 kb on + strand, within AMB_RS00910at 206.040 kb on + strand, within AMB_RS00910at 206.040 kb on + strand, within AMB_RS00910at 206.041 kb on - strand, within AMB_RS00910at 206.041 kb on - strand, within AMB_RS00910at 206.041 kb on - strand, within AMB_RS00910at 206.112 kb on + strand, within AMB_RS00910at 206.113 kb on - strand, within AMB_RS00910at 206.113 kb on - strand, within AMB_RS00910at 206.113 kb on - strand, within AMB_RS00910at 206.113 kb on - strand, within AMB_RS00910at 206.211 kb on + strand, within AMB_RS00910at 206.301 kb on + strand, within AMB_RS00910at 206.301 kb on + strand, within AMB_RS00910at 206.301 kb on + strand, within AMB_RS00910at 206.302 kb on - strand, within AMB_RS00910at 206.302 kb on - strand, within AMB_RS00910at 206.302 kb on - strand, within AMB_RS00910at 206.302 kb on - strand, within AMB_RS00910at 206.302 kb on - strand, within AMB_RS00910at 206.302 kb on - strand, within AMB_RS00910at 206.302 kb on - strand, within AMB_RS00910at 206.302 kb on - strand, within AMB_RS00910at 206.754 kb on + strand, within AMB_RS00910at 206.755 kb on - strand, within AMB_RS00910at 206.755 kb on - strand, within AMB_RS00910at 206.756 kb on + strand, within AMB_RS00910at 206.756 kb on + strand, within AMB_RS00910at 206.756 kb on + strand, within AMB_RS00910at 206.756 kb on + strand, within AMB_RS00910at 206.756 kb on + strand, within AMB_RS00910at 206.756 kb on + strand, within AMB_RS00910at 206.757 kb on - strand, within AMB_RS00910at 206.757 kb on - strand, within AMB_RS00910at 206.757 kb on - strand, within AMB_RS00910at 206.778 kb on + strand, within AMB_RS00910at 206.778 kb on + strand, within AMB_RS00910at 206.778 kb on + strand, within AMB_RS00910at 206.778 kb on + strand, within AMB_RS00910at 206.778 kb on + strand, within AMB_RS00910at 206.778 kb on + strand, within AMB_RS00910at 206.778 kb on + strand, within AMB_RS00910at 206.778 kb on + strand, within AMB_RS00910at 206.778 kb on + strand, within AMB_RS00910at 206.778 kb on + strand, within AMB_RS00910at 206.778 kb on + strand, within AMB_RS00910at 206.778 kb on + strand, within AMB_RS00910at 206.778 kb on + strand, within AMB_RS00910at 206.778 kb on + strand, within AMB_RS00910at 206.778 kb on + strand, within AMB_RS00910at 206.778 kb on + strand, within AMB_RS00910at 206.778 kb on + strand, within AMB_RS00910at 206.778 kb on + strand, within AMB_RS00910at 206.778 kb on + strand, within AMB_RS00910at 206.778 kb on + strand, within AMB_RS00910at 206.778 kb on + strand, within AMB_RS00910at 206.778 kb on + strand, within AMB_RS00910at 206.779 kb on - strand, within AMB_RS00910at 206.779 kb on - strand, within AMB_RS00910at 206.779 kb on - strand, within AMB_RS00910at 206.779 kb on - strand, within AMB_RS00910at 206.779 kb on - strand, within AMB_RS00910at 206.779 kb on - strand, within AMB_RS00910at 206.779 kb on - strand, within AMB_RS00910at 206.779 kb on - strand, within AMB_RS00910at 206.779 kb on - strand, within AMB_RS00910at 206.779 kb on - strand, within AMB_RS00910at 206.779 kb on - strand, within AMB_RS00910at 206.779 kb on - strand, within AMB_RS00910at 206.779 kb on - strand, within AMB_RS00910at 206.779 kb on - strand, within AMB_RS00910at 206.779 kb on - strand, within AMB_RS00910at 206.779 kb on - strand, within AMB_RS00910at 206.779 kb on - strand, within AMB_RS00910at 206.779 kb on - strand, within AMB_RS00910at 206.779 kb on - strand, within AMB_RS00910at 206.779 kb on - strand, within AMB_RS00910at 206.779 kb on - strand, within AMB_RS00910at 206.779 kb on - strand, within AMB_RS00910at 206.779 kb on - strand, within AMB_RS00910at 206.779 kb on - strand, within AMB_RS00910at 206.779 kb on - strand, within AMB_RS00910at 206.779 kb on - strand, within AMB_RS00910at 206.883 kb on + strand, within AMB_RS00910at 206.884 kb on - strand, within AMB_RS00910at 206.884 kb on - strand, within AMB_RS00910at 207.052 kb on - strand, within AMB_RS00910at 207.493 kb on + strand, within AMB_RS00915at 207.493 kb on + strand, within AMB_RS00915at 207.493 kb on + strand, within AMB_RS00915at 207.494 kb on - strand, within AMB_RS00915at 207.494 kb on - strand, within AMB_RS00915at 207.494 kb on - strand, within AMB_RS00915at 207.494 kb on - strand, within AMB_RS00915at 207.494 kb on - strand, within AMB_RS00915at 207.497 kb on + strand, within AMB_RS00915at 207.497 kb on + strand, within AMB_RS00915at 207.497 kb on + strand, within AMB_RS00915at 207.497 kb on + strand, within AMB_RS00915at 207.497 kb on + strand, within AMB_RS00915at 207.497 kb on + strand, within AMB_RS00915at 207.498 kb on - strand, within AMB_RS00915at 207.498 kb on - strand, within AMB_RS00915at 207.498 kb on - strand, within AMB_RS00915at 207.498 kb on - strand, within AMB_RS00915at 207.498 kb on - strand, within AMB_RS00915at 207.498 kb on - strand, within AMB_RS00915at 207.498 kb on - strand, within AMB_RS00915at 207.498 kb on - strand, within AMB_RS00915at 207.498 kb on - strand, within AMB_RS00915at 207.498 kb on - strand, within AMB_RS00915at 207.498 kb on - strand, within AMB_RS00915at 207.498 kb on - strand, within AMB_RS00915at 207.498 kb on - strand, within AMB_RS00915at 207.498 kb on - strand, within AMB_RS00915at 207.500 kb on + strand, within AMB_RS00915at 207.500 kb on + strand, within AMB_RS00915at 207.500 kb on + strand, within AMB_RS00915at 207.500 kb on + strand, within AMB_RS00915at 207.500 kb on + strand, within AMB_RS00915at 207.500 kb on + strand, within AMB_RS00915at 207.501 kb on - strand, within AMB_RS00915at 207.501 kb on - strand, within AMB_RS00915at 208.109 kb on + strand, within AMB_RS00915at 208.109 kb on + strand, within AMB_RS00915at 208.125 kb on - strand, within AMB_RS00915at 208.136 kb on + strand, within AMB_RS00915

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_mag_3
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204,375 + -0.4
204,375 + -0.9
204,375 + +0.6
204,376 - -0.1
204,376 - -0.4
204,662 + AMB_RS00905 0.33 +1.1
204,662 + AMB_RS00905 0.33 -0.1
204,663 - AMB_RS00905 0.33 -0.6
204,663 - AMB_RS00905 0.33 -0.5
204,664 + AMB_RS00905 0.33 +0.0
205,066 + AMB_RS00905 0.84 -1.5
205,131 - +0.2
205,211 + -0.8
205,212 - -0.5
205,212 - -0.4
205,359 + -0.5
205,359 + +0.4
205,359 + -0.4
205,359 + -2.1
205,359 + -1.8
205,359 + -0.9
205,359 + -1.2
205,359 + +0.1
205,359 + -0.7
205,359 + -0.9
205,360 - -0.3
205,360 - -1.0
205,360 - -0.4
205,360 - -0.2
205,360 - -4.4
205,360 - -1.5
205,360 - +0.7
205,360 - -0.5
205,360 - -1.0
205,372 - +0.7
205,629 + AMB_RS00910 0.18 -0.8
205,629 + AMB_RS00910 0.18 -1.0
205,630 - AMB_RS00910 0.18 -0.7
205,733 + AMB_RS00910 0.23 -0.7
205,733 + AMB_RS00910 0.23 -1.6
205,734 - AMB_RS00910 0.23 +1.5
205,734 - AMB_RS00910 0.23 -0.9
205,734 - AMB_RS00910 0.23 -0.5
205,734 - AMB_RS00910 0.23 -0.7
205,734 - AMB_RS00910 0.23 -0.7
205,734 - AMB_RS00910 0.23 -0.8
205,734 - AMB_RS00910 0.23 +1.1
206,040 + AMB_RS00910 0.38 -0.4
206,040 + AMB_RS00910 0.38 -0.1
206,040 + AMB_RS00910 0.38 -0.9
206,040 + AMB_RS00910 0.38 -0.7
206,041 - AMB_RS00910 0.38 -1.1
206,041 - AMB_RS00910 0.38 -1.4
206,041 - AMB_RS00910 0.38 -1.0
206,112 + AMB_RS00910 0.41 -0.8
206,113 - AMB_RS00910 0.41 -1.1
206,113 - AMB_RS00910 0.41 +1.0
206,113 - AMB_RS00910 0.41 -1.0
206,113 - AMB_RS00910 0.41 -1.1
206,211 + AMB_RS00910 0.46 -1.6
206,301 + AMB_RS00910 0.50 -0.8
206,301 + AMB_RS00910 0.50 -1.4
206,301 + AMB_RS00910 0.50 -3.6
206,302 - AMB_RS00910 0.50 -0.1
206,302 - AMB_RS00910 0.50 -0.7
206,302 - AMB_RS00910 0.50 -0.7
206,302 - AMB_RS00910 0.50 -0.1
206,302 - AMB_RS00910 0.50 -1.5
206,302 - AMB_RS00910 0.50 +0.5
206,302 - AMB_RS00910 0.50 -0.7
206,302 - AMB_RS00910 0.50 -0.7
206,754 + AMB_RS00910 0.72 -0.7
206,755 - AMB_RS00910 0.72 -1.1
206,755 - AMB_RS00910 0.72 -0.6
206,756 + AMB_RS00910 0.72 +0.0
206,756 + AMB_RS00910 0.72 -1.9
206,756 + AMB_RS00910 0.72 -1.2
206,756 + AMB_RS00910 0.72 -0.8
206,756 + AMB_RS00910 0.72 +0.1
206,756 + AMB_RS00910 0.72 -0.8
206,757 - AMB_RS00910 0.72 -1.3
206,757 - AMB_RS00910 0.72 -0.8
206,757 - AMB_RS00910 0.72 -2.1
206,778 + AMB_RS00910 0.73 -0.7
206,778 + AMB_RS00910 0.73 -0.3
206,778 + AMB_RS00910 0.73 -1.0
206,778 + AMB_RS00910 0.73 -0.2
206,778 + AMB_RS00910 0.73 +1.1
206,778 + AMB_RS00910 0.73 -0.5
206,778 + AMB_RS00910 0.73 -0.9
206,778 + AMB_RS00910 0.73 -0.5
206,778 + AMB_RS00910 0.73 -0.1
206,778 + AMB_RS00910 0.73 -0.5
206,778 + AMB_RS00910 0.73 -1.6
206,778 + AMB_RS00910 0.73 -1.1
206,778 + AMB_RS00910 0.73 -1.1
206,778 + AMB_RS00910 0.73 -0.5
206,778 + AMB_RS00910 0.73 -0.0
206,778 + AMB_RS00910 0.73 -0.9
206,778 + AMB_RS00910 0.73 -1.2
206,778 + AMB_RS00910 0.73 -1.2
206,778 + AMB_RS00910 0.73 -1.1
206,778 + AMB_RS00910 0.73 -0.1
206,778 + AMB_RS00910 0.73 -1.3
206,778 + AMB_RS00910 0.73 -1.0
206,779 - AMB_RS00910 0.73 -0.7
206,779 - AMB_RS00910 0.73 -0.8
206,779 - AMB_RS00910 0.73 -0.4
206,779 - AMB_RS00910 0.73 +0.1
206,779 - AMB_RS00910 0.73 -1.0
206,779 - AMB_RS00910 0.73 -0.7
206,779 - AMB_RS00910 0.73 -1.5
206,779 - AMB_RS00910 0.73 +0.2
206,779 - AMB_RS00910 0.73 -0.5
206,779 - AMB_RS00910 0.73 +0.7
206,779 - AMB_RS00910 0.73 -1.0
206,779 - AMB_RS00910 0.73 -1.1
206,779 - AMB_RS00910 0.73 -0.2
206,779 - AMB_RS00910 0.73 -0.8
206,779 - AMB_RS00910 0.73 -0.9
206,779 - AMB_RS00910 0.73 -1.1
206,779 - AMB_RS00910 0.73 -1.1
206,779 - AMB_RS00910 0.73 -0.5
206,779 - AMB_RS00910 0.73 -0.8
206,779 - AMB_RS00910 0.73 -2.2
206,779 - AMB_RS00910 0.73 -1.0
206,779 - AMB_RS00910 0.73 -0.9
206,779 - AMB_RS00910 0.73 -0.3
206,779 - AMB_RS00910 0.73 -0.9
206,779 - AMB_RS00910 0.73 -0.1
206,779 - AMB_RS00910 0.73 -1.2
206,883 + AMB_RS00910 0.78 -0.7
206,884 - AMB_RS00910 0.78 -0.3
206,884 - AMB_RS00910 0.78 -0.7
207,052 - AMB_RS00910 0.86 -1.0
207,493 + AMB_RS00915 0.10 +0.7
207,493 + AMB_RS00915 0.10 -0.4
207,493 + AMB_RS00915 0.10 -0.7
207,494 - AMB_RS00915 0.10 -1.7
207,494 - AMB_RS00915 0.10 -0.8
207,494 - AMB_RS00915 0.10 -1.0
207,494 - AMB_RS00915 0.10 +0.1
207,494 - AMB_RS00915 0.10 -0.2
207,497 + AMB_RS00915 0.11 -0.9
207,497 + AMB_RS00915 0.11 -0.6
207,497 + AMB_RS00915 0.11 -1.3
207,497 + AMB_RS00915 0.11 -0.5
207,497 + AMB_RS00915 0.11 -0.6
207,497 + AMB_RS00915 0.11 -0.8
207,498 - AMB_RS00915 0.11 -0.5
207,498 - AMB_RS00915 0.11 -2.6
207,498 - AMB_RS00915 0.11 -0.7
207,498 - AMB_RS00915 0.11 +0.6
207,498 - AMB_RS00915 0.11 -0.7
207,498 - AMB_RS00915 0.11 -2.0
207,498 - AMB_RS00915 0.11 -1.4
207,498 - AMB_RS00915 0.11 -2.8
207,498 - AMB_RS00915 0.11 -2.1
207,498 - AMB_RS00915 0.11 -0.1
207,498 - AMB_RS00915 0.11 -1.5
207,498 - AMB_RS00915 0.11 -0.4
207,498 - AMB_RS00915 0.11 -1.1
207,498 - AMB_RS00915 0.11 -0.2
207,500 + AMB_RS00915 0.11 -0.5
207,500 + AMB_RS00915 0.11 -1.0
207,500 + AMB_RS00915 0.11 -1.4
207,500 + AMB_RS00915 0.11 -0.8
207,500 + AMB_RS00915 0.11 -0.8
207,500 + AMB_RS00915 0.11 -2.1
207,501 - AMB_RS00915 0.11 -1.6
207,501 - AMB_RS00915 0.11 -0.1
208,109 + AMB_RS00915 0.51 -0.8
208,109 + AMB_RS00915 0.51 +0.1
208,125 - AMB_RS00915 0.52 -0.9
208,136 + AMB_RS00915 0.53 -1.1

Or see this region's nucleotide sequence