Experiment: 150_mag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS00845 and AMB_RS00850 are separated by 50 nucleotides AMB_RS00850 and AMB_RS00855 are separated by 220 nucleotides
AMB_RS00845: AMB_RS00845 - UDP-N-acetylmuramate--alanine ligase, at 188,726 to 190,123
_RS00845
AMB_RS00850: AMB_RS00850 - LD-carboxypeptidase, at 190,174 to 191,019
_RS00850
AMB_RS00855: AMB_RS00855 - helix-turn-helix domain-containing protein, at 191,240 to 192,112
_RS00855
Position (kb) 190
191
192 Strain fitness (log2 ratio) -1
0
1 at 189.406 kb on - strand, within AMB_RS00845 at 189.406 kb on - strand, within AMB_RS00845 at 189.579 kb on + strand, within AMB_RS00845 at 189.579 kb on + strand, within AMB_RS00845 at 189.580 kb on - strand, within AMB_RS00845 at 189.978 kb on + strand, within AMB_RS00845 at 189.979 kb on - strand, within AMB_RS00845 at 190.105 kb on - strand at 190.105 kb on - strand at 190.105 kb on - strand at 190.486 kb on + strand, within AMB_RS00850 at 190.528 kb on + strand, within AMB_RS00850 at 190.689 kb on + strand, within AMB_RS00850 at 190.690 kb on - strand, within AMB_RS00850 at 190.777 kb on + strand, within AMB_RS00850 at 190.777 kb on + strand, within AMB_RS00850 at 190.783 kb on + strand, within AMB_RS00850 at 190.784 kb on - strand, within AMB_RS00850 at 190.784 kb on - strand, within AMB_RS00850 at 190.784 kb on - strand, within AMB_RS00850 at 190.949 kb on - strand at 191.364 kb on - strand, within AMB_RS00855 at 191.407 kb on + strand, within AMB_RS00855 at 191.408 kb on - strand, within AMB_RS00855 at 191.438 kb on - strand, within AMB_RS00855 at 191.546 kb on + strand, within AMB_RS00855 at 191.546 kb on + strand, within AMB_RS00855 at 191.547 kb on - strand, within AMB_RS00855 at 191.547 kb on - strand, within AMB_RS00855 at 191.547 kb on - strand, within AMB_RS00855 at 191.911 kb on + strand, within AMB_RS00855 at 191.912 kb on - strand, within AMB_RS00855 at 191.912 kb on - strand, within AMB_RS00855
Per-strain Table
Position Strand Gene LocusTag Fraction 150_mag_3 remove 189,406 - AMB_RS00845 0.49 -1.6 189,406 - AMB_RS00845 0.49 -0.6 189,579 + AMB_RS00845 0.61 -0.5 189,579 + AMB_RS00845 0.61 +0.1 189,580 - AMB_RS00845 0.61 -0.8 189,978 + AMB_RS00845 0.90 +0.1 189,979 - AMB_RS00845 0.90 -0.5 190,105 - +0.5 190,105 - -0.2 190,105 - -0.8 190,486 + AMB_RS00850 0.37 -0.5 190,528 + AMB_RS00850 0.42 -0.8 190,689 + AMB_RS00850 0.61 +0.1 190,690 - AMB_RS00850 0.61 +0.3 190,777 + AMB_RS00850 0.71 -0.6 190,777 + AMB_RS00850 0.71 -1.3 190,783 + AMB_RS00850 0.72 -0.7 190,784 - AMB_RS00850 0.72 -0.7 190,784 - AMB_RS00850 0.72 -0.5 190,784 - AMB_RS00850 0.72 +0.1 190,949 - -0.2 191,364 - AMB_RS00855 0.14 -0.5 191,407 + AMB_RS00855 0.19 +0.5 191,408 - AMB_RS00855 0.19 +0.0 191,438 - AMB_RS00855 0.23 -0.8 191,546 + AMB_RS00855 0.35 -0.7 191,546 + AMB_RS00855 0.35 -0.5 191,547 - AMB_RS00855 0.35 -0.1 191,547 - AMB_RS00855 0.35 -0.4 191,547 - AMB_RS00855 0.35 -0.2 191,911 + AMB_RS00855 0.77 -0.2 191,912 - AMB_RS00855 0.77 -0.0 191,912 - AMB_RS00855 0.77 -0.1
Or see this region's nucleotide sequence