Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS00715

Experiment: 150_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS00705 and AMB_RS00710 are separated by 4 nucleotidesAMB_RS00710 and AMB_RS00715 are separated by 12 nucleotidesAMB_RS00715 and AMB_RS00720 are separated by 144 nucleotides AMB_RS00705: AMB_RS00705 - class I SAM-dependent methyltransferase, at 160,751 to 161,995 _RS00705 AMB_RS00710: AMB_RS00710 - cupin domain-containing protein, at 162,000 to 162,479 _RS00710 AMB_RS00715: AMB_RS00715 - glycosyltransferase family 2 protein, at 162,492 to 163,199 _RS00715 AMB_RS00720: AMB_RS00720 - hypothetical protein, at 163,344 to 165,542 _RS00720 Position (kb) 162 163 164Strain fitness (log2 ratio) -3 -2 -1 0 1at 161.721 kb on + strand, within AMB_RS00705at 161.721 kb on + strand, within AMB_RS00705at 161.721 kb on + strand, within AMB_RS00705at 161.721 kb on + strand, within AMB_RS00705at 161.721 kb on + strand, within AMB_RS00705at 161.721 kb on + strand, within AMB_RS00705at 161.721 kb on + strand, within AMB_RS00705at 161.721 kb on + strand, within AMB_RS00705at 161.722 kb on - strand, within AMB_RS00705at 161.766 kb on + strand, within AMB_RS00705at 161.766 kb on + strand, within AMB_RS00705at 161.766 kb on + strand, within AMB_RS00705at 161.766 kb on + strand, within AMB_RS00705at 161.766 kb on + strand, within AMB_RS00705at 161.772 kb on + strand, within AMB_RS00705at 161.772 kb on + strand, within AMB_RS00705at 161.772 kb on + strand, within AMB_RS00705at 161.772 kb on + strand, within AMB_RS00705at 161.772 kb on + strand, within AMB_RS00705at 161.772 kb on + strand, within AMB_RS00705at 161.772 kb on + strand, within AMB_RS00705at 161.772 kb on + strand, within AMB_RS00705at 162.001 kb on + strandat 162.001 kb on + strandat 162.001 kb on + strandat 162.001 kb on + strandat 162.001 kb on + strandat 162.001 kb on + strandat 162.001 kb on + strandat 162.002 kb on - strandat 162.073 kb on + strand, within AMB_RS00710at 162.232 kb on + strand, within AMB_RS00710at 162.256 kb on + strand, within AMB_RS00710at 162.256 kb on + strand, within AMB_RS00710at 162.256 kb on + strand, within AMB_RS00710at 162.256 kb on + strand, within AMB_RS00710at 162.256 kb on + strand, within AMB_RS00710at 162.256 kb on + strand, within AMB_RS00710at 162.256 kb on + strand, within AMB_RS00710at 162.256 kb on + strand, within AMB_RS00710at 162.257 kb on - strand, within AMB_RS00710at 162.262 kb on + strand, within AMB_RS00710at 162.262 kb on + strand, within AMB_RS00710at 162.344 kb on + strand, within AMB_RS00710at 162.344 kb on + strand, within AMB_RS00710at 162.389 kb on + strand, within AMB_RS00710at 162.463 kb on + strandat 162.463 kb on + strandat 162.572 kb on - strand, within AMB_RS00715at 162.586 kb on + strand, within AMB_RS00715at 162.586 kb on + strand, within AMB_RS00715at 162.587 kb on - strand, within AMB_RS00715at 162.605 kb on - strand, within AMB_RS00715at 162.712 kb on + strand, within AMB_RS00715at 162.712 kb on + strand, within AMB_RS00715at 162.713 kb on - strand, within AMB_RS00715at 162.721 kb on + strand, within AMB_RS00715at 162.722 kb on - strand, within AMB_RS00715at 162.804 kb on + strand, within AMB_RS00715at 162.805 kb on - strand, within AMB_RS00715at 162.814 kb on + strand, within AMB_RS00715at 162.889 kb on + strand, within AMB_RS00715at 162.889 kb on + strand, within AMB_RS00715at 162.890 kb on - strand, within AMB_RS00715at 162.890 kb on - strand, within AMB_RS00715at 162.890 kb on - strand, within AMB_RS00715at 162.904 kb on + strand, within AMB_RS00715at 162.904 kb on + strand, within AMB_RS00715at 162.905 kb on - strand, within AMB_RS00715at 162.966 kb on + strand, within AMB_RS00715at 162.966 kb on + strand, within AMB_RS00715at 162.967 kb on - strand, within AMB_RS00715at 163.013 kb on - strand, within AMB_RS00715at 163.013 kb on - strand, within AMB_RS00715at 163.013 kb on - strand, within AMB_RS00715at 163.153 kb on + strandat 163.153 kb on + strandat 163.182 kb on - strandat 163.208 kb on + strandat 163.223 kb on + strandat 163.223 kb on + strandat 163.224 kb on - strandat 163.242 kb on + strandat 163.420 kb on + strandat 163.420 kb on + strandat 163.420 kb on + strandat 163.421 kb on - strandat 163.421 kb on - strandat 163.421 kb on - strandat 163.801 kb on + strand, within AMB_RS00720at 163.802 kb on - strand, within AMB_RS00720at 163.802 kb on - strand, within AMB_RS00720at 163.802 kb on - strand, within AMB_RS00720at 163.802 kb on - strand, within AMB_RS00720at 163.805 kb on + strand, within AMB_RS00720at 163.805 kb on + strand, within AMB_RS00720at 163.805 kb on + strand, within AMB_RS00720at 163.805 kb on + strand, within AMB_RS00720at 163.806 kb on - strand, within AMB_RS00720at 163.806 kb on - strand, within AMB_RS00720at 163.806 kb on - strand, within AMB_RS00720at 163.806 kb on - strand, within AMB_RS00720at 163.806 kb on - strand, within AMB_RS00720at 163.850 kb on - strand, within AMB_RS00720at 163.852 kb on + strand, within AMB_RS00720at 163.852 kb on + strand, within AMB_RS00720at 163.853 kb on - strand, within AMB_RS00720at 163.866 kb on + strand, within AMB_RS00720at 163.960 kb on + strand, within AMB_RS00720at 163.961 kb on - strand, within AMB_RS00720at 164.095 kb on + strand, within AMB_RS00720at 164.150 kb on + strand, within AMB_RS00720at 164.153 kb on - strand, within AMB_RS00720at 164.153 kb on - strand, within AMB_RS00720at 164.153 kb on - strand, within AMB_RS00720at 164.153 kb on - strand, within AMB_RS00720at 164.160 kb on + strand, within AMB_RS00720at 164.160 kb on + strand, within AMB_RS00720at 164.161 kb on - strand, within AMB_RS00720at 164.185 kb on + strand, within AMB_RS00720at 164.186 kb on - strand, within AMB_RS00720at 164.186 kb on - strand, within AMB_RS00720at 164.186 kb on - strand, within AMB_RS00720at 164.186 kb on - strand, within AMB_RS00720

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_mag_3
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161,721 + AMB_RS00705 0.78 -0.5
161,721 + AMB_RS00705 0.78 -0.2
161,721 + AMB_RS00705 0.78 -0.5
161,721 + AMB_RS00705 0.78 -3.3
161,721 + AMB_RS00705 0.78 -0.2
161,721 + AMB_RS00705 0.78 +0.2
161,721 + AMB_RS00705 0.78 -1.1
161,721 + AMB_RS00705 0.78 +0.7
161,722 - AMB_RS00705 0.78 -1.0
161,766 + AMB_RS00705 0.82 -0.4
161,766 + AMB_RS00705 0.82 -0.2
161,766 + AMB_RS00705 0.82 -0.3
161,766 + AMB_RS00705 0.82 +0.1
161,766 + AMB_RS00705 0.82 -0.5
161,772 + AMB_RS00705 0.82 -0.3
161,772 + AMB_RS00705 0.82 +0.1
161,772 + AMB_RS00705 0.82 -0.4
161,772 + AMB_RS00705 0.82 +0.1
161,772 + AMB_RS00705 0.82 -0.8
161,772 + AMB_RS00705 0.82 -0.2
161,772 + AMB_RS00705 0.82 -0.8
161,772 + AMB_RS00705 0.82 -0.7
162,001 + +0.3
162,001 + +0.1
162,001 + -1.5
162,001 + -3.2
162,001 + +0.8
162,001 + -0.5
162,001 + +0.3
162,002 - -1.5
162,073 + AMB_RS00710 0.15 +0.1
162,232 + AMB_RS00710 0.48 +0.4
162,256 + AMB_RS00710 0.53 -0.2
162,256 + AMB_RS00710 0.53 -0.1
162,256 + AMB_RS00710 0.53 +1.4
162,256 + AMB_RS00710 0.53 +0.4
162,256 + AMB_RS00710 0.53 -1.0
162,256 + AMB_RS00710 0.53 -1.0
162,256 + AMB_RS00710 0.53 +1.5
162,256 + AMB_RS00710 0.53 -0.3
162,257 - AMB_RS00710 0.54 -2.9
162,262 + AMB_RS00710 0.55 -0.9
162,262 + AMB_RS00710 0.55 -0.3
162,344 + AMB_RS00710 0.72 -0.2
162,344 + AMB_RS00710 0.72 -0.4
162,389 + AMB_RS00710 0.81 -0.3
162,463 + +0.0
162,463 + +0.1
162,572 - AMB_RS00715 0.11 -0.6
162,586 + AMB_RS00715 0.13 +0.1
162,586 + AMB_RS00715 0.13 +0.2
162,587 - AMB_RS00715 0.13 -1.1
162,605 - AMB_RS00715 0.16 -0.0
162,712 + AMB_RS00715 0.31 -0.8
162,712 + AMB_RS00715 0.31 +0.1
162,713 - AMB_RS00715 0.31 -1.4
162,721 + AMB_RS00715 0.32 -0.3
162,722 - AMB_RS00715 0.32 -1.1
162,804 + AMB_RS00715 0.44 -0.8
162,805 - AMB_RS00715 0.44 -0.5
162,814 + AMB_RS00715 0.45 +0.3
162,889 + AMB_RS00715 0.56 -0.4
162,889 + AMB_RS00715 0.56 -0.4
162,890 - AMB_RS00715 0.56 -1.1
162,890 - AMB_RS00715 0.56 +0.3
162,890 - AMB_RS00715 0.56 +0.1
162,904 + AMB_RS00715 0.58 -0.0
162,904 + AMB_RS00715 0.58 -0.5
162,905 - AMB_RS00715 0.58 -0.4
162,966 + AMB_RS00715 0.67 -0.3
162,966 + AMB_RS00715 0.67 +1.4
162,967 - AMB_RS00715 0.67 -0.7
163,013 - AMB_RS00715 0.74 -0.5
163,013 - AMB_RS00715 0.74 +0.2
163,013 - AMB_RS00715 0.74 -1.0
163,153 + -0.7
163,153 + -0.4
163,182 - +0.5
163,208 + +0.3
163,223 + +0.2
163,223 + -0.3
163,224 - -1.7
163,242 + -0.0
163,420 + -0.2
163,420 + +0.1
163,420 + -0.8
163,421 - +0.7
163,421 - -0.7
163,421 - +0.0
163,801 + AMB_RS00720 0.21 -0.7
163,802 - AMB_RS00720 0.21 -0.3
163,802 - AMB_RS00720 0.21 -0.2
163,802 - AMB_RS00720 0.21 +0.1
163,802 - AMB_RS00720 0.21 -0.1
163,805 + AMB_RS00720 0.21 +0.1
163,805 + AMB_RS00720 0.21 +0.1
163,805 + AMB_RS00720 0.21 +0.8
163,805 + AMB_RS00720 0.21 +0.8
163,806 - AMB_RS00720 0.21 -0.6
163,806 - AMB_RS00720 0.21 +0.3
163,806 - AMB_RS00720 0.21 -0.2
163,806 - AMB_RS00720 0.21 -0.6
163,806 - AMB_RS00720 0.21 -0.2
163,850 - AMB_RS00720 0.23 -0.3
163,852 + AMB_RS00720 0.23 -0.1
163,852 + AMB_RS00720 0.23 +1.5
163,853 - AMB_RS00720 0.23 +0.1
163,866 + AMB_RS00720 0.24 +0.1
163,960 + AMB_RS00720 0.28 -1.1
163,961 - AMB_RS00720 0.28 -0.9
164,095 + AMB_RS00720 0.34 -0.1
164,150 + AMB_RS00720 0.37 -0.2
164,153 - AMB_RS00720 0.37 -0.2
164,153 - AMB_RS00720 0.37 -0.7
164,153 - AMB_RS00720 0.37 -1.6
164,153 - AMB_RS00720 0.37 -0.0
164,160 + AMB_RS00720 0.37 -0.2
164,160 + AMB_RS00720 0.37 +1.3
164,161 - AMB_RS00720 0.37 +0.2
164,185 + AMB_RS00720 0.38 -2.7
164,186 - AMB_RS00720 0.38 +0.5
164,186 - AMB_RS00720 0.38 +0.1
164,186 - AMB_RS00720 0.38 +0.2
164,186 - AMB_RS00720 0.38 +0.5

Or see this region's nucleotide sequence