Experiment: 150_mag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS00450 and AMB_RS00455 overlap by 52 nucleotides AMB_RS00455 and AMB_RS00460 overlap by 4 nucleotides AMB_RS00460 and AMB_RS00465 are separated by 10 nucleotides
AMB_RS00450: AMB_RS00450 - radical SAM protein, at 99,030 to 100,166
_RS00450
AMB_RS00455: AMB_RS00455 - KR domain-containing protein, at 100,115 to 100,942
_RS00455
AMB_RS00460: AMB_RS00460 - acylneuraminate cytidylyltransferase family protein, at 100,939 to 101,616
_RS00460
AMB_RS00465: AMB_RS00465 - CBS domain-containing protein, at 101,627 to 103,873
_RS00465
Position (kb)
100
101 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 99.237 kb on + strand, within AMB_RS00450 at 99.237 kb on + strand, within AMB_RS00450 at 99.238 kb on - strand, within AMB_RS00450 at 99.378 kb on + strand, within AMB_RS00450 at 99.378 kb on + strand, within AMB_RS00450 at 99.378 kb on + strand, within AMB_RS00450 at 99.378 kb on + strand, within AMB_RS00450 at 99.379 kb on - strand, within AMB_RS00450 at 99.379 kb on - strand, within AMB_RS00450 at 99.379 kb on - strand, within AMB_RS00450 at 99.380 kb on + strand, within AMB_RS00450 at 99.380 kb on + strand, within AMB_RS00450 at 99.394 kb on - strand, within AMB_RS00450 at 99.394 kb on - strand, within AMB_RS00450 at 99.405 kb on + strand, within AMB_RS00450 at 99.432 kb on + strand, within AMB_RS00450 at 99.432 kb on + strand, within AMB_RS00450 at 99.432 kb on + strand, within AMB_RS00450 at 99.432 kb on + strand, within AMB_RS00450 at 99.432 kb on + strand, within AMB_RS00450 at 99.432 kb on + strand, within AMB_RS00450 at 99.433 kb on - strand, within AMB_RS00450 at 99.433 kb on - strand, within AMB_RS00450 at 99.438 kb on + strand, within AMB_RS00450 at 99.438 kb on + strand, within AMB_RS00450 at 99.438 kb on + strand, within AMB_RS00450 at 99.445 kb on + strand, within AMB_RS00450 at 99.543 kb on + strand, within AMB_RS00450 at 99.543 kb on + strand, within AMB_RS00450 at 99.543 kb on + strand, within AMB_RS00450 at 99.543 kb on + strand, within AMB_RS00450 at 99.544 kb on - strand, within AMB_RS00450 at 99.544 kb on - strand, within AMB_RS00450 at 99.846 kb on + strand, within AMB_RS00450 at 99.873 kb on + strand, within AMB_RS00450 at 99.924 kb on + strand, within AMB_RS00450 at 99.924 kb on + strand, within AMB_RS00450 at 99.924 kb on + strand, within AMB_RS00450 at 99.993 kb on + strand, within AMB_RS00450 at 99.993 kb on + strand, within AMB_RS00450 at 99.993 kb on + strand, within AMB_RS00450 at 99.993 kb on + strand, within AMB_RS00450 at 99.993 kb on + strand, within AMB_RS00450 at 99.993 kb on + strand, within AMB_RS00450 at 99.994 kb on - strand, within AMB_RS00450 at 99.994 kb on - strand, within AMB_RS00450 at 99.994 kb on - strand, within AMB_RS00450 at 99.994 kb on - strand, within AMB_RS00450 at 99.994 kb on - strand, within AMB_RS00450 at 100.062 kb on + strand at 100.062 kb on + strand at 100.062 kb on + strand at 100.062 kb on + strand at 100.062 kb on + strand at 100.063 kb on - strand at 100.112 kb on + strand at 100.112 kb on + strand at 100.113 kb on - strand at 100.113 kb on - strand at 100.490 kb on + strand, within AMB_RS00455 at 100.490 kb on + strand, within AMB_RS00455 at 100.490 kb on + strand, within AMB_RS00455 at 100.610 kb on + strand, within AMB_RS00455 at 100.640 kb on + strand, within AMB_RS00455 at 100.640 kb on + strand, within AMB_RS00455 at 100.640 kb on + strand, within AMB_RS00455 at 100.640 kb on + strand, within AMB_RS00455 at 100.640 kb on + strand, within AMB_RS00455 at 100.640 kb on + strand, within AMB_RS00455 at 100.640 kb on + strand, within AMB_RS00455 at 100.640 kb on + strand, within AMB_RS00455 at 100.640 kb on + strand, within AMB_RS00455 at 100.673 kb on + strand, within AMB_RS00455 at 100.724 kb on + strand, within AMB_RS00455
Per-strain Table
Position Strand Gene LocusTag Fraction 150_mag_3 remove 99,237 + AMB_RS00450 0.18 -1.6 99,237 + AMB_RS00450 0.18 +0.0 99,238 - AMB_RS00450 0.18 -1.9 99,378 + AMB_RS00450 0.31 +0.1 99,378 + AMB_RS00450 0.31 -0.3 99,378 + AMB_RS00450 0.31 +0.5 99,378 + AMB_RS00450 0.31 +0.4 99,379 - AMB_RS00450 0.31 +1.3 99,379 - AMB_RS00450 0.31 -0.7 99,379 - AMB_RS00450 0.31 +0.1 99,380 + AMB_RS00450 0.31 +0.6 99,380 + AMB_RS00450 0.31 -0.8 99,394 - AMB_RS00450 0.32 -0.9 99,394 - AMB_RS00450 0.32 -2.4 99,405 + AMB_RS00450 0.33 +0.3 99,432 + AMB_RS00450 0.35 +0.2 99,432 + AMB_RS00450 0.35 -1.0 99,432 + AMB_RS00450 0.35 +1.3 99,432 + AMB_RS00450 0.35 +1.4 99,432 + AMB_RS00450 0.35 +1.9 99,432 + AMB_RS00450 0.35 -0.0 99,433 - AMB_RS00450 0.35 -1.1 99,433 - AMB_RS00450 0.35 +0.4 99,438 + AMB_RS00450 0.36 +0.0 99,438 + AMB_RS00450 0.36 +0.1 99,438 + AMB_RS00450 0.36 +0.3 99,445 + AMB_RS00450 0.36 +0.3 99,543 + AMB_RS00450 0.45 -0.2 99,543 + AMB_RS00450 0.45 +1.1 99,543 + AMB_RS00450 0.45 -0.4 99,543 + AMB_RS00450 0.45 +0.0 99,544 - AMB_RS00450 0.45 -0.9 99,544 - AMB_RS00450 0.45 +1.2 99,846 + AMB_RS00450 0.72 -0.6 99,873 + AMB_RS00450 0.74 -0.7 99,924 + AMB_RS00450 0.79 +0.2 99,924 + AMB_RS00450 0.79 +0.9 99,924 + AMB_RS00450 0.79 -1.2 99,993 + AMB_RS00450 0.85 +1.5 99,993 + AMB_RS00450 0.85 -0.1 99,993 + AMB_RS00450 0.85 +0.7 99,993 + AMB_RS00450 0.85 +0.1 99,993 + AMB_RS00450 0.85 -0.3 99,993 + AMB_RS00450 0.85 -0.1 99,994 - AMB_RS00450 0.85 -0.9 99,994 - AMB_RS00450 0.85 +0.2 99,994 - AMB_RS00450 0.85 -1.1 99,994 - AMB_RS00450 0.85 -0.2 99,994 - AMB_RS00450 0.85 -0.0 100,062 + -0.9 100,062 + -2.2 100,062 + +0.3 100,062 + -0.3 100,062 + -0.1 100,063 - -0.9 100,112 + -0.1 100,112 + -0.9 100,113 - +0.1 100,113 - -0.1 100,490 + AMB_RS00455 0.45 +0.1 100,490 + AMB_RS00455 0.45 -1.9 100,490 + AMB_RS00455 0.45 -0.5 100,610 + AMB_RS00455 0.60 -1.5 100,640 + AMB_RS00455 0.63 -0.8 100,640 + AMB_RS00455 0.63 -1.0 100,640 + AMB_RS00455 0.63 -0.6 100,640 + AMB_RS00455 0.63 -0.9 100,640 + AMB_RS00455 0.63 -0.4 100,640 + AMB_RS00455 0.63 -1.0 100,640 + AMB_RS00455 0.63 -0.5 100,640 + AMB_RS00455 0.63 -0.9 100,640 + AMB_RS00455 0.63 -1.2 100,673 + AMB_RS00455 0.67 +0.0 100,724 + AMB_RS00455 0.74 -0.8
Or see this region's nucleotide sequence