Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS00165

Experiment: 150_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS00160 and AMB_RS00165 are separated by 116 nucleotidesAMB_RS00165 and AMB_RS00170 are separated by 32 nucleotidesAMB_RS00170 and AMB_RS00175 overlap by 44 nucleotides AMB_RS00160: AMB_RS00160 - hypothetical protein, at 31,891 to 32,943 _RS00160 AMB_RS00165: AMB_RS00165 - NAD-glutamate dehydrogenase, at 33,060 to 37,871 _RS00165 AMB_RS00170: AMB_RS00170 - phosphoheptose isomerase, at 37,904 to 38,482 _RS00170 AMB_RS00175: AMB_RS00175 - hypothetical protein, at 38,439 to 38,987 _RS00175 Position (kb) 33 34 35 36 37 38Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 32.083 kb on + strand, within AMB_RS00160at 32.083 kb on + strand, within AMB_RS00160at 32.207 kb on - strand, within AMB_RS00160at 32.341 kb on + strand, within AMB_RS00160at 32.341 kb on + strand, within AMB_RS00160at 32.341 kb on + strand, within AMB_RS00160at 32.342 kb on - strand, within AMB_RS00160at 32.342 kb on - strand, within AMB_RS00160at 32.342 kb on - strand, within AMB_RS00160at 32.429 kb on - strand, within AMB_RS00160at 32.599 kb on + strand, within AMB_RS00160at 32.600 kb on - strand, within AMB_RS00160at 32.773 kb on - strand, within AMB_RS00160at 32.860 kb on + strandat 32.861 kb on - strandat 32.941 kb on + strandat 32.941 kb on + strandat 32.942 kb on - strandat 32.985 kb on + strandat 33.015 kb on + strandat 33.075 kb on + strandat 33.075 kb on + strandat 33.076 kb on - strandat 33.076 kb on - strandat 33.147 kb on + strandat 33.147 kb on + strandat 33.148 kb on - strandat 33.201 kb on + strandat 33.202 kb on - strandat 33.338 kb on + strandat 33.339 kb on - strandat 33.339 kb on - strandat 33.339 kb on - strandat 33.917 kb on - strand, within AMB_RS00165at 34.023 kb on + strand, within AMB_RS00165at 34.023 kb on + strand, within AMB_RS00165at 34.024 kb on - strand, within AMB_RS00165at 34.024 kb on - strand, within AMB_RS00165at 34.024 kb on - strand, within AMB_RS00165at 34.024 kb on - strand, within AMB_RS00165at 34.025 kb on + strand, within AMB_RS00165at 34.025 kb on + strand, within AMB_RS00165at 34.025 kb on + strand, within AMB_RS00165at 34.026 kb on - strand, within AMB_RS00165at 34.143 kb on + strand, within AMB_RS00165at 34.144 kb on - strand, within AMB_RS00165at 34.144 kb on - strand, within AMB_RS00165at 34.374 kb on + strand, within AMB_RS00165at 34.374 kb on + strand, within AMB_RS00165at 34.374 kb on + strand, within AMB_RS00165at 34.375 kb on - strand, within AMB_RS00165at 34.375 kb on - strand, within AMB_RS00165at 34.375 kb on - strand, within AMB_RS00165at 34.725 kb on + strand, within AMB_RS00165at 34.726 kb on - strand, within AMB_RS00165at 35.035 kb on - strand, within AMB_RS00165at 35.058 kb on + strand, within AMB_RS00165at 35.070 kb on + strand, within AMB_RS00165at 35.070 kb on + strand, within AMB_RS00165at 35.071 kb on - strand, within AMB_RS00165at 35.232 kb on - strand, within AMB_RS00165at 35.232 kb on - strand, within AMB_RS00165at 35.254 kb on + strand, within AMB_RS00165at 35.316 kb on + strand, within AMB_RS00165at 35.316 kb on + strand, within AMB_RS00165at 35.316 kb on + strand, within AMB_RS00165at 35.316 kb on + strand, within AMB_RS00165at 35.317 kb on - strand, within AMB_RS00165at 35.317 kb on - strand, within AMB_RS00165at 35.320 kb on + strand, within AMB_RS00165at 35.321 kb on - strand, within AMB_RS00165at 35.321 kb on - strand, within AMB_RS00165at 35.598 kb on + strand, within AMB_RS00165at 35.598 kb on + strand, within AMB_RS00165at 35.724 kb on + strand, within AMB_RS00165at 35.725 kb on - strand, within AMB_RS00165at 35.725 kb on - strand, within AMB_RS00165at 35.793 kb on + strand, within AMB_RS00165at 35.794 kb on - strand, within AMB_RS00165at 35.842 kb on - strand, within AMB_RS00165at 35.992 kb on + strand, within AMB_RS00165at 36.039 kb on - strand, within AMB_RS00165at 36.306 kb on + strand, within AMB_RS00165at 36.306 kb on + strand, within AMB_RS00165at 36.306 kb on + strand, within AMB_RS00165at 36.307 kb on - strand, within AMB_RS00165at 36.307 kb on - strand, within AMB_RS00165at 36.307 kb on - strand, within AMB_RS00165at 36.307 kb on - strand, within AMB_RS00165at 36.307 kb on - strand, within AMB_RS00165at 36.657 kb on + strand, within AMB_RS00165at 36.657 kb on + strand, within AMB_RS00165at 36.658 kb on - strand, within AMB_RS00165at 36.876 kb on + strand, within AMB_RS00165at 36.939 kb on + strand, within AMB_RS00165at 36.939 kb on + strand, within AMB_RS00165at 36.940 kb on - strand, within AMB_RS00165at 37.113 kb on + strand, within AMB_RS00165at 37.114 kb on - strand, within AMB_RS00165at 37.115 kb on + strand, within AMB_RS00165at 37.521 kb on + strandat 37.635 kb on + strandat 37.678 kb on - strandat 37.678 kb on - strandat 38.512 kb on + strand, within AMB_RS00175at 38.528 kb on + strand, within AMB_RS00175at 38.528 kb on + strand, within AMB_RS00175at 38.529 kb on - strand, within AMB_RS00175at 38.529 kb on - strand, within AMB_RS00175at 38.529 kb on - strand, within AMB_RS00175at 38.529 kb on - strand, within AMB_RS00175

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_mag_3
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32,083 + AMB_RS00160 0.18 +0.2
32,083 + AMB_RS00160 0.18 -0.6
32,207 - AMB_RS00160 0.30 -0.8
32,341 + AMB_RS00160 0.43 -0.3
32,341 + AMB_RS00160 0.43 -0.8
32,341 + AMB_RS00160 0.43 -0.5
32,342 - AMB_RS00160 0.43 -0.6
32,342 - AMB_RS00160 0.43 -0.1
32,342 - AMB_RS00160 0.43 +0.6
32,429 - AMB_RS00160 0.51 -0.9
32,599 + AMB_RS00160 0.67 +0.5
32,600 - AMB_RS00160 0.67 -1.0
32,773 - AMB_RS00160 0.84 -1.5
32,860 + -0.1
32,861 - -2.2
32,941 + +0.2
32,941 + -0.4
32,942 - -0.3
32,985 + +1.0
33,015 + +0.2
33,075 + -1.3
33,075 + -0.8
33,076 - +0.0
33,076 - -0.6
33,147 + -0.2
33,147 + -0.6
33,148 - -0.3
33,201 + -0.2
33,202 - -0.8
33,338 + -0.2
33,339 - -0.3
33,339 - +0.3
33,339 - -0.6
33,917 - AMB_RS00165 0.18 +0.4
34,023 + AMB_RS00165 0.20 -0.0
34,023 + AMB_RS00165 0.20 -0.0
34,024 - AMB_RS00165 0.20 +0.1
34,024 - AMB_RS00165 0.20 +1.1
34,024 - AMB_RS00165 0.20 -0.3
34,024 - AMB_RS00165 0.20 -0.9
34,025 + AMB_RS00165 0.20 -0.2
34,025 + AMB_RS00165 0.20 +0.1
34,025 + AMB_RS00165 0.20 -0.4
34,026 - AMB_RS00165 0.20 +0.0
34,143 + AMB_RS00165 0.23 +0.4
34,144 - AMB_RS00165 0.23 -0.8
34,144 - AMB_RS00165 0.23 +0.0
34,374 + AMB_RS00165 0.27 -0.3
34,374 + AMB_RS00165 0.27 +0.7
34,374 + AMB_RS00165 0.27 +0.2
34,375 - AMB_RS00165 0.27 +0.2
34,375 - AMB_RS00165 0.27 +0.3
34,375 - AMB_RS00165 0.27 -0.4
34,725 + AMB_RS00165 0.35 -0.1
34,726 - AMB_RS00165 0.35 +2.4
35,035 - AMB_RS00165 0.41 -1.5
35,058 + AMB_RS00165 0.42 +0.7
35,070 + AMB_RS00165 0.42 -1.0
35,070 + AMB_RS00165 0.42 -0.5
35,071 - AMB_RS00165 0.42 +0.5
35,232 - AMB_RS00165 0.45 -0.9
35,232 - AMB_RS00165 0.45 -1.3
35,254 + AMB_RS00165 0.46 -0.9
35,316 + AMB_RS00165 0.47 +0.4
35,316 + AMB_RS00165 0.47 -0.1
35,316 + AMB_RS00165 0.47 -0.2
35,316 + AMB_RS00165 0.47 +0.4
35,317 - AMB_RS00165 0.47 -0.1
35,317 - AMB_RS00165 0.47 +0.1
35,320 + AMB_RS00165 0.47 -0.5
35,321 - AMB_RS00165 0.47 -0.2
35,321 - AMB_RS00165 0.47 -0.2
35,598 + AMB_RS00165 0.53 -0.7
35,598 + AMB_RS00165 0.53 +0.1
35,724 + AMB_RS00165 0.55 -0.6
35,725 - AMB_RS00165 0.55 +0.1
35,725 - AMB_RS00165 0.55 +0.7
35,793 + AMB_RS00165 0.57 -0.5
35,794 - AMB_RS00165 0.57 -0.2
35,842 - AMB_RS00165 0.58 +0.1
35,992 + AMB_RS00165 0.61 -0.3
36,039 - AMB_RS00165 0.62 -0.3
36,306 + AMB_RS00165 0.67 -0.3
36,306 + AMB_RS00165 0.67 -0.0
36,306 + AMB_RS00165 0.67 -0.7
36,307 - AMB_RS00165 0.67 -0.8
36,307 - AMB_RS00165 0.67 -0.2
36,307 - AMB_RS00165 0.67 -0.1
36,307 - AMB_RS00165 0.67 +0.2
36,307 - AMB_RS00165 0.67 +1.2
36,657 + AMB_RS00165 0.75 -0.2
36,657 + AMB_RS00165 0.75 +0.0
36,658 - AMB_RS00165 0.75 -0.5
36,876 + AMB_RS00165 0.79 +0.0
36,939 + AMB_RS00165 0.81 +0.0
36,939 + AMB_RS00165 0.81 +0.8
36,940 - AMB_RS00165 0.81 +0.3
37,113 + AMB_RS00165 0.84 -0.5
37,114 - AMB_RS00165 0.84 +2.0
37,115 + AMB_RS00165 0.84 -0.8
37,521 + -2.4
37,635 + +0.3
37,678 - -1.4
37,678 - +0.1
38,512 + AMB_RS00175 0.13 +0.3
38,528 + AMB_RS00175 0.16 +0.0
38,528 + AMB_RS00175 0.16 -0.3
38,529 - AMB_RS00175 0.16 -3.2
38,529 - AMB_RS00175 0.16 +0.9
38,529 - AMB_RS00175 0.16 -0.4
38,529 - AMB_RS00175 0.16 +0.4

Or see this region's nucleotide sequence