Experiment: L-Glutamine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS27150 and ABIE40_RS27155 are separated by 541 nucleotides ABIE40_RS27155 and ABIE40_RS27160 are separated by 110 nucleotides ABIE40_RS27160 and ABIE40_RS27165 are separated by 725 nucleotides
ABIE40_RS27150: ABIE40_RS27150 - NUDIX hydrolase, at 148,083 to 148,550
_RS27150
ABIE40_RS27155: ABIE40_RS27155 - acetyltransferase, at 149,092 to 149,304
_RS27155
ABIE40_RS27160: ABIE40_RS27160 - low affinity iron permease family protein, at 149,415 to 149,759
_RS27160
ABIE40_RS27165: ABIE40_RS27165 - ArsR family transcriptional regulator, at 150,485 to 150,823
_RS27165
Position (kb) 149
150 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 148.441 kb on + strand, within ABIE40_RS27150 at 148.441 kb on + strand, within ABIE40_RS27150 at 148.442 kb on - strand, within ABIE40_RS27150 at 148.481 kb on - strand, within ABIE40_RS27150 at 148.556 kb on + strand at 148.556 kb on + strand at 148.557 kb on - strand at 148.561 kb on - strand at 148.561 kb on - strand at 148.678 kb on + strand at 148.678 kb on + strand at 148.752 kb on + strand at 148.752 kb on + strand at 148.923 kb on + strand at 149.049 kb on + strand at 149.050 kb on - strand at 149.111 kb on - strand at 149.111 kb on - strand at 149.111 kb on - strand at 149.111 kb on - strand at 149.242 kb on + strand, within ABIE40_RS27155 at 149.243 kb on - strand, within ABIE40_RS27155 at 149.330 kb on - strand at 149.330 kb on - strand at 149.501 kb on - strand, within ABIE40_RS27160 at 149.822 kb on + strand at 149.823 kb on - strand at 149.823 kb on - strand at 149.906 kb on + strand at 149.935 kb on - strand at 149.935 kb on - strand at 150.120 kb on + strand at 150.213 kb on + strand at 150.213 kb on + strand at 150.214 kb on - strand at 150.214 kb on - strand at 150.266 kb on - strand at 150.295 kb on + strand at 150.296 kb on - strand at 150.296 kb on - strand at 150.303 kb on - strand at 150.361 kb on + strand at 150.449 kb on + strand at 150.459 kb on - strand at 150.459 kb on - strand at 150.479 kb on + strand at 150.584 kb on + strand, within ABIE40_RS27165 at 150.584 kb on + strand, within ABIE40_RS27165 at 150.584 kb on + strand, within ABIE40_RS27165 at 150.585 kb on - strand, within ABIE40_RS27165 at 150.585 kb on - strand, within ABIE40_RS27165 at 150.586 kb on + strand, within ABIE40_RS27165 at 150.586 kb on + strand, within ABIE40_RS27165 at 150.587 kb on - strand, within ABIE40_RS27165 at 150.676 kb on - strand, within ABIE40_RS27165 at 150.676 kb on - strand, within ABIE40_RS27165 at 150.732 kb on - strand, within ABIE40_RS27165 at 150.735 kb on - strand, within ABIE40_RS27165
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (C) remove 148,441 + ABIE40_RS27150 0.76 -0.5 148,441 + ABIE40_RS27150 0.76 +0.1 148,442 - ABIE40_RS27150 0.77 +0.4 148,481 - ABIE40_RS27150 0.85 -0.5 148,556 + -1.4 148,556 + -0.6 148,557 - -0.2 148,561 - -1.6 148,561 - -2.5 148,678 + -0.0 148,678 + +0.1 148,752 + +0.3 148,752 + +0.2 148,923 + -1.0 149,049 + -0.4 149,050 - -0.0 149,111 - +0.1 149,111 - +0.2 149,111 - -0.3 149,111 - -0.5 149,242 + ABIE40_RS27155 0.70 -1.1 149,243 - ABIE40_RS27155 0.71 -0.2 149,330 - +2.6 149,330 - -1.4 149,501 - ABIE40_RS27160 0.25 -1.7 149,822 + -1.0 149,823 - -0.3 149,823 - +0.1 149,906 + +0.3 149,935 - -0.2 149,935 - -0.8 150,120 + +0.4 150,213 + +0.6 150,213 + -1.3 150,214 - +0.8 150,214 - -1.0 150,266 - -0.6 150,295 + -0.0 150,296 - +1.9 150,296 - -0.9 150,303 - +0.1 150,361 + +1.5 150,449 + -1.6 150,459 - +0.2 150,459 - +1.2 150,479 + -0.8 150,584 + ABIE40_RS27165 0.29 +0.3 150,584 + ABIE40_RS27165 0.29 -0.8 150,584 + ABIE40_RS27165 0.29 -1.0 150,585 - ABIE40_RS27165 0.29 -0.3 150,585 - ABIE40_RS27165 0.29 -3.2 150,586 + ABIE40_RS27165 0.30 -1.1 150,586 + ABIE40_RS27165 0.30 +0.1 150,587 - ABIE40_RS27165 0.30 -1.6 150,676 - ABIE40_RS27165 0.56 +0.8 150,676 - ABIE40_RS27165 0.56 +0.6 150,732 - ABIE40_RS27165 0.73 -0.6 150,735 - ABIE40_RS27165 0.74 -1.3
Or see this region's nucleotide sequence