Experiment: L-Glutamine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS20625 and ABIE40_RS20630 are separated by 7 nucleotides ABIE40_RS20630 and ABIE40_RS20635 are separated by 40 nucleotides ABIE40_RS20635 and ABIE40_RS20640 are separated by 4 nucleotides ABIE40_RS20640 and ABIE40_RS20645 overlap by 4 nucleotides
ABIE40_RS20625: ABIE40_RS20625 - amino acid ABC transporter permease, at 232,572 to 233,225
_RS20625
ABIE40_RS20630: ABIE40_RS20630 - amino acid ABC transporter permease, at 233,233 to 233,916
_RS20630
ABIE40_RS20635: ABIE40_RS20635 - 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD, at 233,957 to 234,712
_RS20635
ABIE40_RS20640: ABIE40_RS20640 - 5-dehydro-4-deoxy-D-glucuronate isomerase, at 234,717 to 235,553
_RS20640
ABIE40_RS20645: ABIE40_RS20645 - GntR family transcriptional regulator, at 235,550 to 236,320
_RS20645
Position (kb) 233
234
235 Strain fitness (log2 ratio) -2
-1
0
1
2 at 233.008 kb on + strand, within ABIE40_RS20625 at 233.009 kb on - strand, within ABIE40_RS20625 at 233.009 kb on - strand, within ABIE40_RS20625 at 233.059 kb on + strand, within ABIE40_RS20625 at 233.059 kb on + strand, within ABIE40_RS20625 at 233.060 kb on - strand, within ABIE40_RS20625 at 233.060 kb on - strand, within ABIE40_RS20625 at 233.060 kb on - strand, within ABIE40_RS20625 at 233.191 kb on + strand at 233.191 kb on + strand at 233.192 kb on - strand at 233.192 kb on - strand at 233.309 kb on + strand, within ABIE40_RS20630 at 233.309 kb on + strand, within ABIE40_RS20630 at 233.310 kb on - strand, within ABIE40_RS20630 at 233.310 kb on - strand, within ABIE40_RS20630 at 233.310 kb on - strand, within ABIE40_RS20630 at 233.310 kb on - strand, within ABIE40_RS20630 at 233.324 kb on + strand, within ABIE40_RS20630 at 233.324 kb on + strand, within ABIE40_RS20630 at 233.324 kb on + strand, within ABIE40_RS20630 at 233.324 kb on + strand, within ABIE40_RS20630 at 233.324 kb on + strand, within ABIE40_RS20630 at 233.325 kb on - strand, within ABIE40_RS20630 at 233.325 kb on - strand, within ABIE40_RS20630 at 233.325 kb on - strand, within ABIE40_RS20630 at 233.325 kb on - strand, within ABIE40_RS20630 at 233.325 kb on - strand, within ABIE40_RS20630 at 233.325 kb on - strand, within ABIE40_RS20630 at 233.325 kb on - strand, within ABIE40_RS20630 at 233.325 kb on - strand, within ABIE40_RS20630 at 233.474 kb on + strand, within ABIE40_RS20630 at 233.474 kb on + strand, within ABIE40_RS20630 at 233.514 kb on - strand, within ABIE40_RS20630 at 233.514 kb on - strand, within ABIE40_RS20630 at 233.604 kb on + strand, within ABIE40_RS20630 at 233.605 kb on - strand, within ABIE40_RS20630 at 233.605 kb on - strand, within ABIE40_RS20630 at 233.736 kb on + strand, within ABIE40_RS20630 at 233.737 kb on - strand, within ABIE40_RS20630 at 233.737 kb on - strand, within ABIE40_RS20630 at 233.738 kb on + strand, within ABIE40_RS20630 at 233.738 kb on + strand, within ABIE40_RS20630 at 233.738 kb on + strand, within ABIE40_RS20630 at 233.739 kb on - strand, within ABIE40_RS20630 at 233.739 kb on - strand, within ABIE40_RS20630 at 233.909 kb on + strand at 233.909 kb on + strand at 233.909 kb on + strand at 233.909 kb on + strand at 233.910 kb on - strand at 233.916 kb on + strand at 233.916 kb on + strand at 233.916 kb on + strand at 233.916 kb on + strand at 233.916 kb on + strand at 233.916 kb on + strand at 233.916 kb on + strand at 233.916 kb on + strand at 233.917 kb on - strand at 233.917 kb on - strand at 233.917 kb on - strand at 233.958 kb on + strand at 233.959 kb on - strand at 234.006 kb on + strand at 234.006 kb on + strand at 234.033 kb on - strand, within ABIE40_RS20635 at 234.150 kb on + strand, within ABIE40_RS20635 at 234.247 kb on - strand, within ABIE40_RS20635 at 234.373 kb on + strand, within ABIE40_RS20635 at 234.373 kb on + strand, within ABIE40_RS20635 at 234.374 kb on - strand, within ABIE40_RS20635 at 234.374 kb on - strand, within ABIE40_RS20635 at 234.718 kb on + strand at 234.719 kb on - strand at 234.719 kb on - strand at 234.719 kb on - strand at 234.719 kb on - strand at 234.796 kb on + strand at 234.796 kb on + strand at 234.796 kb on + strand at 234.796 kb on + strand at 234.797 kb on - strand at 234.797 kb on - strand at 234.797 kb on - strand at 234.797 kb on - strand at 234.934 kb on + strand, within ABIE40_RS20640 at 234.935 kb on - strand, within ABIE40_RS20640 at 234.935 kb on - strand, within ABIE40_RS20640 at 234.935 kb on - strand, within ABIE40_RS20640 at 234.940 kb on + strand, within ABIE40_RS20640 at 234.940 kb on + strand, within ABIE40_RS20640 at 234.940 kb on + strand, within ABIE40_RS20640 at 234.941 kb on - strand, within ABIE40_RS20640 at 234.941 kb on - strand, within ABIE40_RS20640 at 234.941 kb on - strand, within ABIE40_RS20640 at 234.965 kb on + strand, within ABIE40_RS20640 at 234.965 kb on + strand, within ABIE40_RS20640 at 235.063 kb on + strand, within ABIE40_RS20640 at 235.063 kb on + strand, within ABIE40_RS20640 at 235.064 kb on - strand, within ABIE40_RS20640 at 235.067 kb on + strand, within ABIE40_RS20640 at 235.067 kb on + strand, within ABIE40_RS20640 at 235.067 kb on + strand, within ABIE40_RS20640 at 235.067 kb on + strand, within ABIE40_RS20640 at 235.067 kb on + strand, within ABIE40_RS20640 at 235.068 kb on - strand, within ABIE40_RS20640 at 235.068 kb on - strand, within ABIE40_RS20640 at 235.068 kb on - strand, within ABIE40_RS20640 at 235.068 kb on - strand, within ABIE40_RS20640 at 235.174 kb on + strand, within ABIE40_RS20640 at 235.175 kb on - strand, within ABIE40_RS20640 at 235.240 kb on + strand, within ABIE40_RS20640 at 235.240 kb on + strand, within ABIE40_RS20640 at 235.241 kb on - strand, within ABIE40_RS20640 at 235.241 kb on - strand, within ABIE40_RS20640 at 235.241 kb on - strand, within ABIE40_RS20640 at 235.241 kb on - strand, within ABIE40_RS20640 at 235.252 kb on + strand, within ABIE40_RS20640 at 235.252 kb on + strand, within ABIE40_RS20640 at 235.267 kb on + strand, within ABIE40_RS20640 at 235.267 kb on + strand, within ABIE40_RS20640 at 235.268 kb on - strand, within ABIE40_RS20640 at 235.432 kb on + strand, within ABIE40_RS20640 at 235.432 kb on + strand, within ABIE40_RS20640 at 235.505 kb on - strand at 235.544 kb on - strand at 235.611 kb on + strand at 235.611 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (C) remove 233,008 + ABIE40_RS20625 0.67 -1.0 233,009 - ABIE40_RS20625 0.67 -1.3 233,009 - ABIE40_RS20625 0.67 -0.5 233,059 + ABIE40_RS20625 0.74 +1.6 233,059 + ABIE40_RS20625 0.74 +0.5 233,060 - ABIE40_RS20625 0.75 +0.2 233,060 - ABIE40_RS20625 0.75 -0.1 233,060 - ABIE40_RS20625 0.75 +0.9 233,191 + -2.7 233,191 + -1.6 233,192 - -2.3 233,192 - -2.1 233,309 + ABIE40_RS20630 0.11 -0.2 233,309 + ABIE40_RS20630 0.11 +0.4 233,310 - ABIE40_RS20630 0.11 +0.3 233,310 - ABIE40_RS20630 0.11 -0.2 233,310 - ABIE40_RS20630 0.11 -0.6 233,310 - ABIE40_RS20630 0.11 +0.3 233,324 + ABIE40_RS20630 0.13 -0.5 233,324 + ABIE40_RS20630 0.13 -1.0 233,324 + ABIE40_RS20630 0.13 -2.6 233,324 + ABIE40_RS20630 0.13 -0.7 233,324 + ABIE40_RS20630 0.13 -1.3 233,325 - ABIE40_RS20630 0.13 -0.1 233,325 - ABIE40_RS20630 0.13 -0.3 233,325 - ABIE40_RS20630 0.13 +0.4 233,325 - ABIE40_RS20630 0.13 -0.2 233,325 - ABIE40_RS20630 0.13 -0.3 233,325 - ABIE40_RS20630 0.13 +1.3 233,325 - ABIE40_RS20630 0.13 +2.7 233,325 - ABIE40_RS20630 0.13 -0.7 233,474 + ABIE40_RS20630 0.35 -1.3 233,474 + ABIE40_RS20630 0.35 +2.3 233,514 - ABIE40_RS20630 0.41 -1.2 233,514 - ABIE40_RS20630 0.41 -0.1 233,604 + ABIE40_RS20630 0.54 +0.2 233,605 - ABIE40_RS20630 0.54 -2.2 233,605 - ABIE40_RS20630 0.54 +0.2 233,736 + ABIE40_RS20630 0.74 -0.4 233,737 - ABIE40_RS20630 0.74 -1.8 233,737 - ABIE40_RS20630 0.74 +0.1 233,738 + ABIE40_RS20630 0.74 +0.1 233,738 + ABIE40_RS20630 0.74 +0.1 233,738 + ABIE40_RS20630 0.74 +0.3 233,739 - ABIE40_RS20630 0.74 -1.0 233,739 - ABIE40_RS20630 0.74 -1.6 233,909 + -0.6 233,909 + -0.2 233,909 + +0.8 233,909 + +0.3 233,910 - +0.1 233,916 + -2.1 233,916 + -0.9 233,916 + +0.0 233,916 + -0.1 233,916 + -0.3 233,916 + +0.8 233,916 + -1.0 233,916 + -1.6 233,917 - -0.1 233,917 - -0.2 233,917 - -1.7 233,958 + -0.1 233,959 - +0.9 234,006 + -0.1 234,006 + +0.6 234,033 - ABIE40_RS20635 0.10 -0.7 234,150 + ABIE40_RS20635 0.26 +2.3 234,247 - ABIE40_RS20635 0.38 -2.4 234,373 + ABIE40_RS20635 0.55 -2.6 234,373 + ABIE40_RS20635 0.55 -0.7 234,374 - ABIE40_RS20635 0.55 +0.5 234,374 - ABIE40_RS20635 0.55 -1.0 234,718 + +0.6 234,719 - +0.1 234,719 - -0.1 234,719 - -0.1 234,719 - +0.1 234,796 + +0.9 234,796 + +0.3 234,796 + -1.3 234,796 + +1.7 234,797 - -0.0 234,797 - -0.1 234,797 - +0.3 234,797 - +0.8 234,934 + ABIE40_RS20640 0.26 +0.4 234,935 - ABIE40_RS20640 0.26 +0.1 234,935 - ABIE40_RS20640 0.26 +0.6 234,935 - ABIE40_RS20640 0.26 -1.0 234,940 + ABIE40_RS20640 0.27 +0.8 234,940 + ABIE40_RS20640 0.27 -1.7 234,940 + ABIE40_RS20640 0.27 +0.3 234,941 - ABIE40_RS20640 0.27 -0.4 234,941 - ABIE40_RS20640 0.27 +0.4 234,941 - ABIE40_RS20640 0.27 -1.0 234,965 + ABIE40_RS20640 0.30 +2.1 234,965 + ABIE40_RS20640 0.30 +0.2 235,063 + ABIE40_RS20640 0.41 +0.1 235,063 + ABIE40_RS20640 0.41 +0.5 235,064 - ABIE40_RS20640 0.41 +0.3 235,067 + ABIE40_RS20640 0.42 +0.6 235,067 + ABIE40_RS20640 0.42 -1.0 235,067 + ABIE40_RS20640 0.42 -1.1 235,067 + ABIE40_RS20640 0.42 -0.2 235,067 + ABIE40_RS20640 0.42 -0.1 235,068 - ABIE40_RS20640 0.42 +0.2 235,068 - ABIE40_RS20640 0.42 +0.2 235,068 - ABIE40_RS20640 0.42 +1.1 235,068 - ABIE40_RS20640 0.42 +1.8 235,174 + ABIE40_RS20640 0.55 -0.2 235,175 - ABIE40_RS20640 0.55 -0.5 235,240 + ABIE40_RS20640 0.62 -0.3 235,240 + ABIE40_RS20640 0.62 +0.7 235,241 - ABIE40_RS20640 0.63 +1.3 235,241 - ABIE40_RS20640 0.63 -0.7 235,241 - ABIE40_RS20640 0.63 +1.1 235,241 - ABIE40_RS20640 0.63 +0.1 235,252 + ABIE40_RS20640 0.64 +0.5 235,252 + ABIE40_RS20640 0.64 +0.2 235,267 + ABIE40_RS20640 0.66 -0.3 235,267 + ABIE40_RS20640 0.66 -0.8 235,268 - ABIE40_RS20640 0.66 -0.6 235,432 + ABIE40_RS20640 0.85 +0.0 235,432 + ABIE40_RS20640 0.85 -1.1 235,505 - -1.1 235,544 - -0.1 235,611 + -0.9 235,611 + -1.4
Or see this region's nucleotide sequence