Experiment: L-Glutamine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS14775 and ABIE40_RS14780 are separated by 3 nucleotides ABIE40_RS14780 and ABIE40_RS14785 are separated by 3 nucleotides ABIE40_RS14785 and ABIE40_RS14790 are separated by 36 nucleotides
ABIE40_RS14775: ABIE40_RS14775 - hypothetical protein, at 2,892,636 to 2,893,790
_RS14775
ABIE40_RS14780: ABIE40_RS14780 - RNA methyltransferase, at 2,893,794 to 2,894,612
_RS14780
ABIE40_RS14785: ABIE40_RS14785 - hypothetical protein, at 2,894,616 to 2,894,999
_RS14785
ABIE40_RS14790: ABIE40_RS14790 - RluA family pseudouridine synthase, at 2,895,036 to 2,896,070
_RS14790
Position (kb)
2894
2895 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2893.788 kb on + strand at 2893.788 kb on + strand at 2893.788 kb on + strand at 2893.788 kb on + strand at 2893.788 kb on + strand at 2893.789 kb on - strand at 2893.789 kb on - strand at 2893.789 kb on - strand at 2893.789 kb on - strand at 2893.789 kb on - strand at 2894.019 kb on - strand, within ABIE40_RS14780 at 2894.077 kb on + strand, within ABIE40_RS14780 at 2894.078 kb on - strand, within ABIE40_RS14780 at 2894.078 kb on - strand, within ABIE40_RS14780 at 2894.364 kb on - strand, within ABIE40_RS14780 at 2894.364 kb on - strand, within ABIE40_RS14780 at 2894.364 kb on - strand, within ABIE40_RS14780 at 2894.364 kb on - strand, within ABIE40_RS14780 at 2894.365 kb on + strand, within ABIE40_RS14780 at 2894.365 kb on + strand, within ABIE40_RS14780 at 2894.365 kb on + strand, within ABIE40_RS14780 at 2894.365 kb on + strand, within ABIE40_RS14780 at 2894.365 kb on + strand, within ABIE40_RS14780 at 2894.365 kb on + strand, within ABIE40_RS14780 at 2894.365 kb on + strand, within ABIE40_RS14780 at 2894.365 kb on + strand, within ABIE40_RS14780 at 2894.365 kb on + strand, within ABIE40_RS14780 at 2894.366 kb on - strand, within ABIE40_RS14780 at 2894.366 kb on - strand, within ABIE40_RS14780 at 2894.366 kb on - strand, within ABIE40_RS14780 at 2894.366 kb on - strand, within ABIE40_RS14780 at 2894.366 kb on - strand, within ABIE40_RS14780 at 2894.366 kb on - strand, within ABIE40_RS14780 at 2894.366 kb on - strand, within ABIE40_RS14780 at 2894.366 kb on - strand, within ABIE40_RS14780 at 2894.366 kb on - strand, within ABIE40_RS14780 at 2894.366 kb on - strand, within ABIE40_RS14780 at 2894.366 kb on - strand, within ABIE40_RS14780 at 2894.366 kb on - strand, within ABIE40_RS14780 at 2894.707 kb on + strand, within ABIE40_RS14785 at 2894.854 kb on + strand, within ABIE40_RS14785 at 2894.854 kb on + strand, within ABIE40_RS14785 at 2894.854 kb on + strand, within ABIE40_RS14785 at 2894.854 kb on + strand, within ABIE40_RS14785 at 2894.855 kb on - strand, within ABIE40_RS14785 at 2894.855 kb on - strand, within ABIE40_RS14785 at 2894.855 kb on - strand, within ABIE40_RS14785 at 2895.001 kb on - strand at 2895.010 kb on + strand at 2895.010 kb on + strand at 2895.069 kb on - strand at 2895.187 kb on + strand, within ABIE40_RS14790 at 2895.187 kb on + strand, within ABIE40_RS14790 at 2895.247 kb on - strand, within ABIE40_RS14790 at 2895.588 kb on + strand, within ABIE40_RS14790 at 2895.589 kb on - strand, within ABIE40_RS14790 at 2895.726 kb on + strand, within ABIE40_RS14790 at 2895.727 kb on - strand, within ABIE40_RS14790 at 2895.839 kb on + strand, within ABIE40_RS14790 at 2895.839 kb on + strand, within ABIE40_RS14790 at 2895.840 kb on - strand, within ABIE40_RS14790 at 2895.840 kb on - strand, within ABIE40_RS14790 at 2895.871 kb on - strand, within ABIE40_RS14790 at 2895.960 kb on + strand, within ABIE40_RS14790 at 2895.961 kb on - strand, within ABIE40_RS14790 at 2895.961 kb on - strand, within ABIE40_RS14790 at 2895.961 kb on - strand, within ABIE40_RS14790 at 2895.961 kb on - strand, within ABIE40_RS14790 at 2895.962 kb on + strand, within ABIE40_RS14790 at 2895.962 kb on + strand, within ABIE40_RS14790 at 2895.963 kb on - strand, within ABIE40_RS14790 at 2895.963 kb on - strand, within ABIE40_RS14790 at 2895.963 kb on - strand, within ABIE40_RS14790 at 2895.963 kb on - strand, within ABIE40_RS14790 at 2895.963 kb on - strand, within ABIE40_RS14790 at 2895.963 kb on - strand, within ABIE40_RS14790
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (C) remove 2,893,788 + +1.1 2,893,788 + +0.7 2,893,788 + +1.4 2,893,788 + +1.0 2,893,788 + -0.5 2,893,789 - -0.3 2,893,789 - +0.3 2,893,789 - +0.9 2,893,789 - +1.1 2,893,789 - -0.1 2,894,019 - ABIE40_RS14780 0.27 -0.3 2,894,077 + ABIE40_RS14780 0.35 +0.4 2,894,078 - ABIE40_RS14780 0.35 +1.1 2,894,078 - ABIE40_RS14780 0.35 -0.2 2,894,364 - ABIE40_RS14780 0.70 -0.6 2,894,364 - ABIE40_RS14780 0.70 +0.2 2,894,364 - ABIE40_RS14780 0.70 -1.0 2,894,364 - ABIE40_RS14780 0.70 +1.4 2,894,365 + ABIE40_RS14780 0.70 -0.1 2,894,365 + ABIE40_RS14780 0.70 +0.7 2,894,365 + ABIE40_RS14780 0.70 +0.2 2,894,365 + ABIE40_RS14780 0.70 -1.6 2,894,365 + ABIE40_RS14780 0.70 -0.9 2,894,365 + ABIE40_RS14780 0.70 -0.1 2,894,365 + ABIE40_RS14780 0.70 -1.1 2,894,365 + ABIE40_RS14780 0.70 -0.6 2,894,365 + ABIE40_RS14780 0.70 +0.6 2,894,366 - ABIE40_RS14780 0.70 +0.3 2,894,366 - ABIE40_RS14780 0.70 -0.1 2,894,366 - ABIE40_RS14780 0.70 -0.5 2,894,366 - ABIE40_RS14780 0.70 +0.7 2,894,366 - ABIE40_RS14780 0.70 +0.2 2,894,366 - ABIE40_RS14780 0.70 +0.6 2,894,366 - ABIE40_RS14780 0.70 +0.1 2,894,366 - ABIE40_RS14780 0.70 +2.4 2,894,366 - ABIE40_RS14780 0.70 +0.4 2,894,366 - ABIE40_RS14780 0.70 +1.0 2,894,366 - ABIE40_RS14780 0.70 +1.6 2,894,366 - ABIE40_RS14780 0.70 -0.0 2,894,707 + ABIE40_RS14785 0.24 -1.6 2,894,854 + ABIE40_RS14785 0.62 -0.5 2,894,854 + ABIE40_RS14785 0.62 -1.9 2,894,854 + ABIE40_RS14785 0.62 -2.7 2,894,854 + ABIE40_RS14785 0.62 -0.9 2,894,855 - ABIE40_RS14785 0.62 -0.9 2,894,855 - ABIE40_RS14785 0.62 -2.3 2,894,855 - ABIE40_RS14785 0.62 -2.9 2,895,001 - -2.0 2,895,010 + -2.2 2,895,010 + -0.9 2,895,069 - -0.2 2,895,187 + ABIE40_RS14790 0.15 -1.4 2,895,187 + ABIE40_RS14790 0.15 +1.4 2,895,247 - ABIE40_RS14790 0.20 +1.7 2,895,588 + ABIE40_RS14790 0.53 +0.1 2,895,589 - ABIE40_RS14790 0.53 -2.8 2,895,726 + ABIE40_RS14790 0.67 +0.4 2,895,727 - ABIE40_RS14790 0.67 +0.1 2,895,839 + ABIE40_RS14790 0.78 -2.3 2,895,839 + ABIE40_RS14790 0.78 -0.2 2,895,840 - ABIE40_RS14790 0.78 -1.1 2,895,840 - ABIE40_RS14790 0.78 -0.9 2,895,871 - ABIE40_RS14790 0.81 -0.2 2,895,960 + ABIE40_RS14790 0.89 +0.4 2,895,961 - ABIE40_RS14790 0.89 -1.6 2,895,961 - ABIE40_RS14790 0.89 -0.8 2,895,961 - ABIE40_RS14790 0.89 -1.9 2,895,961 - ABIE40_RS14790 0.89 +0.3 2,895,962 + ABIE40_RS14790 0.89 +2.2 2,895,962 + ABIE40_RS14790 0.89 -0.5 2,895,963 - ABIE40_RS14790 0.90 -2.2 2,895,963 - ABIE40_RS14790 0.90 -2.9 2,895,963 - ABIE40_RS14790 0.90 -0.7 2,895,963 - ABIE40_RS14790 0.90 -1.9 2,895,963 - ABIE40_RS14790 0.90 +0.1 2,895,963 - ABIE40_RS14790 0.90 +1.0
Or see this region's nucleotide sequence