Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS14785

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS14775 and ABIE40_RS14780 are separated by 3 nucleotidesABIE40_RS14780 and ABIE40_RS14785 are separated by 3 nucleotidesABIE40_RS14785 and ABIE40_RS14790 are separated by 36 nucleotides ABIE40_RS14775: ABIE40_RS14775 - hypothetical protein, at 2,892,636 to 2,893,790 _RS14775 ABIE40_RS14780: ABIE40_RS14780 - RNA methyltransferase, at 2,893,794 to 2,894,612 _RS14780 ABIE40_RS14785: ABIE40_RS14785 - hypothetical protein, at 2,894,616 to 2,894,999 _RS14785 ABIE40_RS14790: ABIE40_RS14790 - RluA family pseudouridine synthase, at 2,895,036 to 2,896,070 _RS14790 Position (kb) 2894 2895Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2893.788 kb on + strandat 2893.788 kb on + strandat 2893.788 kb on + strandat 2893.788 kb on + strandat 2893.788 kb on + strandat 2893.789 kb on - strandat 2893.789 kb on - strandat 2893.789 kb on - strandat 2893.789 kb on - strandat 2893.789 kb on - strandat 2894.019 kb on - strand, within ABIE40_RS14780at 2894.077 kb on + strand, within ABIE40_RS14780at 2894.078 kb on - strand, within ABIE40_RS14780at 2894.078 kb on - strand, within ABIE40_RS14780at 2894.364 kb on - strand, within ABIE40_RS14780at 2894.364 kb on - strand, within ABIE40_RS14780at 2894.364 kb on - strand, within ABIE40_RS14780at 2894.364 kb on - strand, within ABIE40_RS14780at 2894.365 kb on + strand, within ABIE40_RS14780at 2894.365 kb on + strand, within ABIE40_RS14780at 2894.365 kb on + strand, within ABIE40_RS14780at 2894.365 kb on + strand, within ABIE40_RS14780at 2894.365 kb on + strand, within ABIE40_RS14780at 2894.365 kb on + strand, within ABIE40_RS14780at 2894.365 kb on + strand, within ABIE40_RS14780at 2894.365 kb on + strand, within ABIE40_RS14780at 2894.365 kb on + strand, within ABIE40_RS14780at 2894.366 kb on - strand, within ABIE40_RS14780at 2894.366 kb on - strand, within ABIE40_RS14780at 2894.366 kb on - strand, within ABIE40_RS14780at 2894.366 kb on - strand, within ABIE40_RS14780at 2894.366 kb on - strand, within ABIE40_RS14780at 2894.366 kb on - strand, within ABIE40_RS14780at 2894.366 kb on - strand, within ABIE40_RS14780at 2894.366 kb on - strand, within ABIE40_RS14780at 2894.366 kb on - strand, within ABIE40_RS14780at 2894.366 kb on - strand, within ABIE40_RS14780at 2894.366 kb on - strand, within ABIE40_RS14780at 2894.366 kb on - strand, within ABIE40_RS14780at 2894.707 kb on + strand, within ABIE40_RS14785at 2894.854 kb on + strand, within ABIE40_RS14785at 2894.854 kb on + strand, within ABIE40_RS14785at 2894.854 kb on + strand, within ABIE40_RS14785at 2894.854 kb on + strand, within ABIE40_RS14785at 2894.855 kb on - strand, within ABIE40_RS14785at 2894.855 kb on - strand, within ABIE40_RS14785at 2894.855 kb on - strand, within ABIE40_RS14785at 2895.001 kb on - strandat 2895.010 kb on + strandat 2895.010 kb on + strandat 2895.069 kb on - strandat 2895.187 kb on + strand, within ABIE40_RS14790at 2895.187 kb on + strand, within ABIE40_RS14790at 2895.247 kb on - strand, within ABIE40_RS14790at 2895.588 kb on + strand, within ABIE40_RS14790at 2895.589 kb on - strand, within ABIE40_RS14790at 2895.726 kb on + strand, within ABIE40_RS14790at 2895.727 kb on - strand, within ABIE40_RS14790at 2895.839 kb on + strand, within ABIE40_RS14790at 2895.839 kb on + strand, within ABIE40_RS14790at 2895.840 kb on - strand, within ABIE40_RS14790at 2895.840 kb on - strand, within ABIE40_RS14790at 2895.871 kb on - strand, within ABIE40_RS14790at 2895.960 kb on + strand, within ABIE40_RS14790at 2895.961 kb on - strand, within ABIE40_RS14790at 2895.961 kb on - strand, within ABIE40_RS14790at 2895.961 kb on - strand, within ABIE40_RS14790at 2895.961 kb on - strand, within ABIE40_RS14790at 2895.962 kb on + strand, within ABIE40_RS14790at 2895.962 kb on + strand, within ABIE40_RS14790at 2895.963 kb on - strand, within ABIE40_RS14790at 2895.963 kb on - strand, within ABIE40_RS14790at 2895.963 kb on - strand, within ABIE40_RS14790at 2895.963 kb on - strand, within ABIE40_RS14790at 2895.963 kb on - strand, within ABIE40_RS14790at 2895.963 kb on - strand, within ABIE40_RS14790

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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2,893,788 + +1.1
2,893,788 + +0.7
2,893,788 + +1.4
2,893,788 + +1.0
2,893,788 + -0.5
2,893,789 - -0.3
2,893,789 - +0.3
2,893,789 - +0.9
2,893,789 - +1.1
2,893,789 - -0.1
2,894,019 - ABIE40_RS14780 0.27 -0.3
2,894,077 + ABIE40_RS14780 0.35 +0.4
2,894,078 - ABIE40_RS14780 0.35 +1.1
2,894,078 - ABIE40_RS14780 0.35 -0.2
2,894,364 - ABIE40_RS14780 0.70 -0.6
2,894,364 - ABIE40_RS14780 0.70 +0.2
2,894,364 - ABIE40_RS14780 0.70 -1.0
2,894,364 - ABIE40_RS14780 0.70 +1.4
2,894,365 + ABIE40_RS14780 0.70 -0.1
2,894,365 + ABIE40_RS14780 0.70 +0.7
2,894,365 + ABIE40_RS14780 0.70 +0.2
2,894,365 + ABIE40_RS14780 0.70 -1.6
2,894,365 + ABIE40_RS14780 0.70 -0.9
2,894,365 + ABIE40_RS14780 0.70 -0.1
2,894,365 + ABIE40_RS14780 0.70 -1.1
2,894,365 + ABIE40_RS14780 0.70 -0.6
2,894,365 + ABIE40_RS14780 0.70 +0.6
2,894,366 - ABIE40_RS14780 0.70 +0.3
2,894,366 - ABIE40_RS14780 0.70 -0.1
2,894,366 - ABIE40_RS14780 0.70 -0.5
2,894,366 - ABIE40_RS14780 0.70 +0.7
2,894,366 - ABIE40_RS14780 0.70 +0.2
2,894,366 - ABIE40_RS14780 0.70 +0.6
2,894,366 - ABIE40_RS14780 0.70 +0.1
2,894,366 - ABIE40_RS14780 0.70 +2.4
2,894,366 - ABIE40_RS14780 0.70 +0.4
2,894,366 - ABIE40_RS14780 0.70 +1.0
2,894,366 - ABIE40_RS14780 0.70 +1.6
2,894,366 - ABIE40_RS14780 0.70 -0.0
2,894,707 + ABIE40_RS14785 0.24 -1.6
2,894,854 + ABIE40_RS14785 0.62 -0.5
2,894,854 + ABIE40_RS14785 0.62 -1.9
2,894,854 + ABIE40_RS14785 0.62 -2.7
2,894,854 + ABIE40_RS14785 0.62 -0.9
2,894,855 - ABIE40_RS14785 0.62 -0.9
2,894,855 - ABIE40_RS14785 0.62 -2.3
2,894,855 - ABIE40_RS14785 0.62 -2.9
2,895,001 - -2.0
2,895,010 + -2.2
2,895,010 + -0.9
2,895,069 - -0.2
2,895,187 + ABIE40_RS14790 0.15 -1.4
2,895,187 + ABIE40_RS14790 0.15 +1.4
2,895,247 - ABIE40_RS14790 0.20 +1.7
2,895,588 + ABIE40_RS14790 0.53 +0.1
2,895,589 - ABIE40_RS14790 0.53 -2.8
2,895,726 + ABIE40_RS14790 0.67 +0.4
2,895,727 - ABIE40_RS14790 0.67 +0.1
2,895,839 + ABIE40_RS14790 0.78 -2.3
2,895,839 + ABIE40_RS14790 0.78 -0.2
2,895,840 - ABIE40_RS14790 0.78 -1.1
2,895,840 - ABIE40_RS14790 0.78 -0.9
2,895,871 - ABIE40_RS14790 0.81 -0.2
2,895,960 + ABIE40_RS14790 0.89 +0.4
2,895,961 - ABIE40_RS14790 0.89 -1.6
2,895,961 - ABIE40_RS14790 0.89 -0.8
2,895,961 - ABIE40_RS14790 0.89 -1.9
2,895,961 - ABIE40_RS14790 0.89 +0.3
2,895,962 + ABIE40_RS14790 0.89 +2.2
2,895,962 + ABIE40_RS14790 0.89 -0.5
2,895,963 - ABIE40_RS14790 0.90 -2.2
2,895,963 - ABIE40_RS14790 0.90 -2.9
2,895,963 - ABIE40_RS14790 0.90 -0.7
2,895,963 - ABIE40_RS14790 0.90 -1.9
2,895,963 - ABIE40_RS14790 0.90 +0.1
2,895,963 - ABIE40_RS14790 0.90 +1.0

Or see this region's nucleotide sequence