Experiment: L-Glutamine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS05645 and ABIE40_RS05650 are separated by 21 nucleotides ABIE40_RS05650 and ABIE40_RS05655 are separated by 192 nucleotides ABIE40_RS05655 and ABIE40_RS05660 are separated by 49 nucleotides ABIE40_RS05660 and ABIE40_RS05665 overlap by 1 nucleotides
ABIE40_RS05645: ABIE40_RS05645 - glycoside hydrolase/phage tail family protein, at 1,103,203 to 1,107,045
_RS05645
ABIE40_RS05650: ABIE40_RS05650 - hypothetical protein, at 1,107,067 to 1,107,273
_RS05650
ABIE40_RS05655: ABIE40_RS05655 - hypothetical protein, at 1,107,466 to 1,107,714
_RS05655
ABIE40_RS05660: ABIE40_RS05660 - response regulator transcription factor, at 1,107,764 to 1,108,426
_RS05660
ABIE40_RS05665: ABIE40_RS05665 - HAMP domain-containing sensor histidine kinase, at 1,108,426 to 1,109,829
_RS05665
Position (kb) 1107
1108
1109 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1106.826 kb on + strand at 1107.088 kb on + strand, within ABIE40_RS05650 at 1107.088 kb on + strand, within ABIE40_RS05650 at 1107.088 kb on + strand, within ABIE40_RS05650 at 1107.088 kb on + strand, within ABIE40_RS05650 at 1107.089 kb on - strand, within ABIE40_RS05650 at 1107.204 kb on + strand, within ABIE40_RS05650 at 1107.238 kb on + strand, within ABIE40_RS05650 at 1107.238 kb on + strand, within ABIE40_RS05650 at 1107.238 kb on + strand, within ABIE40_RS05650 at 1107.239 kb on - strand, within ABIE40_RS05650 at 1107.239 kb on - strand, within ABIE40_RS05650 at 1107.304 kb on + strand at 1107.423 kb on + strand at 1107.423 kb on + strand at 1107.423 kb on + strand at 1107.427 kb on + strand at 1107.427 kb on + strand at 1107.712 kb on + strand at 1107.727 kb on + strand at 1107.728 kb on - strand at 1107.729 kb on + strand at 1107.729 kb on + strand at 1107.729 kb on + strand at 1107.729 kb on + strand at 1107.729 kb on + strand at 1107.729 kb on + strand at 1107.730 kb on - strand at 1107.730 kb on - strand at 1107.836 kb on + strand, within ABIE40_RS05660 at 1107.837 kb on - strand, within ABIE40_RS05660 at 1108.055 kb on + strand, within ABIE40_RS05660 at 1108.056 kb on - strand, within ABIE40_RS05660 at 1108.056 kb on - strand, within ABIE40_RS05660 at 1108.295 kb on - strand, within ABIE40_RS05660 at 1108.298 kb on + strand, within ABIE40_RS05660 at 1108.298 kb on + strand, within ABIE40_RS05660 at 1108.433 kb on + strand at 1108.433 kb on + strand at 1108.575 kb on + strand, within ABIE40_RS05665 at 1108.673 kb on - strand, within ABIE40_RS05665 at 1108.786 kb on + strand, within ABIE40_RS05665 at 1108.795 kb on + strand, within ABIE40_RS05665 at 1108.798 kb on + strand, within ABIE40_RS05665 at 1108.799 kb on - strand, within ABIE40_RS05665 at 1108.799 kb on - strand, within ABIE40_RS05665 at 1108.945 kb on + strand, within ABIE40_RS05665 at 1108.946 kb on - strand, within ABIE40_RS05665 at 1109.303 kb on - strand, within ABIE40_RS05665
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (C) remove 1,106,826 + -0.0 1,107,088 + ABIE40_RS05650 0.10 -1.4 1,107,088 + ABIE40_RS05650 0.10 +1.1 1,107,088 + ABIE40_RS05650 0.10 +0.9 1,107,088 + ABIE40_RS05650 0.10 +0.0 1,107,089 - ABIE40_RS05650 0.11 +0.4 1,107,204 + ABIE40_RS05650 0.66 +0.1 1,107,238 + ABIE40_RS05650 0.83 +0.1 1,107,238 + ABIE40_RS05650 0.83 +0.4 1,107,238 + ABIE40_RS05650 0.83 +0.8 1,107,239 - ABIE40_RS05650 0.83 +0.5 1,107,239 - ABIE40_RS05650 0.83 +1.6 1,107,304 + +0.2 1,107,423 + +0.6 1,107,423 + +0.4 1,107,423 + -0.6 1,107,427 + -0.1 1,107,427 + -0.8 1,107,712 + -0.3 1,107,727 + +1.0 1,107,728 - +2.4 1,107,729 + +0.1 1,107,729 + +0.1 1,107,729 + -0.7 1,107,729 + -0.4 1,107,729 + -0.3 1,107,729 + -0.6 1,107,730 - -0.1 1,107,730 - +0.2 1,107,836 + ABIE40_RS05660 0.11 -1.6 1,107,837 - ABIE40_RS05660 0.11 -0.2 1,108,055 + ABIE40_RS05660 0.44 -0.7 1,108,056 - ABIE40_RS05660 0.44 -1.6 1,108,056 - ABIE40_RS05660 0.44 -1.9 1,108,295 - ABIE40_RS05660 0.80 -2.3 1,108,298 + ABIE40_RS05660 0.81 -2.8 1,108,298 + ABIE40_RS05660 0.81 -0.3 1,108,433 + -0.6 1,108,433 + -0.1 1,108,575 + ABIE40_RS05665 0.11 -1.4 1,108,673 - ABIE40_RS05665 0.18 +0.4 1,108,786 + ABIE40_RS05665 0.26 -1.2 1,108,795 + ABIE40_RS05665 0.26 +1.6 1,108,798 + ABIE40_RS05665 0.26 -1.3 1,108,799 - ABIE40_RS05665 0.27 +1.0 1,108,799 - ABIE40_RS05665 0.27 +0.2 1,108,945 + ABIE40_RS05665 0.37 +0.1 1,108,946 - ABIE40_RS05665 0.37 -2.2 1,109,303 - ABIE40_RS05665 0.62 -2.6
Or see this region's nucleotide sequence