Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS04475

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS04470 and ABIE40_RS04475 are separated by 126 nucleotidesABIE40_RS04475 and ABIE40_RS04480 overlap by 2 nucleotidesABIE40_RS04480 and ABIE40_RS04485 are separated by 207 nucleotidesABIE40_RS04485 and ABIE40_RS04490 overlap by 4 nucleotides ABIE40_RS04470: ABIE40_RS04470 - sulfate adenylyltransferase subunit CysD, at 880,728 to 881,681 _RS04470 ABIE40_RS04475: ABIE40_RS04475 - phosphoadenylyl-sulfate reductase, at 881,808 to 882,551 _RS04475 ABIE40_RS04480: ABIE40_RS04480 - hypothetical protein, at 882,550 to 882,765 _RS04480 ABIE40_RS04485: ABIE40_RS04485 - Rrf2 family transcriptional regulator, at 882,973 to 883,419 _RS04485 ABIE40_RS04490: ABIE40_RS04490 - chloride channel protein, at 883,416 to 884,765 _RS04490 Position (kb) 881 882 883Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 880.909 kb on + strand, within ABIE40_RS04470at 880.909 kb on + strand, within ABIE40_RS04470at 880.909 kb on + strand, within ABIE40_RS04470at 880.909 kb on + strand, within ABIE40_RS04470at 880.909 kb on + strand, within ABIE40_RS04470at 880.909 kb on + strand, within ABIE40_RS04470at 880.909 kb on + strand, within ABIE40_RS04470at 880.909 kb on + strand, within ABIE40_RS04470at 880.909 kb on + strand, within ABIE40_RS04470at 880.910 kb on - strand, within ABIE40_RS04470at 880.910 kb on - strand, within ABIE40_RS04470at 880.910 kb on - strand, within ABIE40_RS04470at 880.910 kb on - strand, within ABIE40_RS04470at 880.910 kb on - strand, within ABIE40_RS04470at 880.910 kb on - strand, within ABIE40_RS04470at 880.910 kb on - strand, within ABIE40_RS04470at 881.011 kb on + strand, within ABIE40_RS04470at 881.011 kb on + strand, within ABIE40_RS04470at 881.011 kb on + strand, within ABIE40_RS04470at 881.057 kb on + strand, within ABIE40_RS04470at 881.058 kb on - strand, within ABIE40_RS04470at 881.123 kb on + strand, within ABIE40_RS04470at 881.124 kb on - strand, within ABIE40_RS04470at 881.124 kb on - strand, within ABIE40_RS04470at 881.125 kb on + strand, within ABIE40_RS04470at 881.125 kb on + strand, within ABIE40_RS04470at 881.125 kb on + strand, within ABIE40_RS04470at 881.125 kb on + strand, within ABIE40_RS04470at 881.125 kb on + strand, within ABIE40_RS04470at 881.125 kb on + strand, within ABIE40_RS04470at 881.126 kb on - strand, within ABIE40_RS04470at 881.126 kb on - strand, within ABIE40_RS04470at 881.126 kb on - strand, within ABIE40_RS04470at 881.126 kb on - strand, within ABIE40_RS04470at 881.126 kb on - strand, within ABIE40_RS04470at 881.126 kb on - strand, within ABIE40_RS04470at 881.126 kb on - strand, within ABIE40_RS04470at 881.126 kb on - strand, within ABIE40_RS04470at 881.126 kb on - strand, within ABIE40_RS04470at 881.126 kb on - strand, within ABIE40_RS04470at 881.126 kb on - strand, within ABIE40_RS04470at 881.126 kb on - strand, within ABIE40_RS04470at 881.191 kb on + strand, within ABIE40_RS04470at 881.191 kb on + strand, within ABIE40_RS04470at 881.191 kb on + strand, within ABIE40_RS04470at 881.191 kb on + strand, within ABIE40_RS04470at 881.191 kb on + strand, within ABIE40_RS04470at 881.192 kb on - strand, within ABIE40_RS04470at 881.192 kb on - strand, within ABIE40_RS04470at 881.306 kb on + strand, within ABIE40_RS04470at 881.307 kb on - strand, within ABIE40_RS04470at 881.308 kb on + strand, within ABIE40_RS04470at 881.308 kb on + strand, within ABIE40_RS04470at 881.309 kb on - strand, within ABIE40_RS04470at 881.309 kb on - strand, within ABIE40_RS04470at 881.323 kb on + strand, within ABIE40_RS04470at 881.323 kb on + strand, within ABIE40_RS04470at 881.324 kb on - strand, within ABIE40_RS04470at 881.324 kb on - strand, within ABIE40_RS04470at 881.324 kb on - strand, within ABIE40_RS04470at 881.324 kb on - strand, within ABIE40_RS04470at 881.324 kb on - strand, within ABIE40_RS04470at 881.389 kb on + strand, within ABIE40_RS04470at 881.389 kb on + strand, within ABIE40_RS04470at 881.390 kb on - strand, within ABIE40_RS04470at 881.390 kb on - strand, within ABIE40_RS04470at 881.482 kb on + strand, within ABIE40_RS04470at 881.483 kb on - strand, within ABIE40_RS04470at 881.483 kb on - strand, within ABIE40_RS04470at 881.536 kb on + strand, within ABIE40_RS04470at 881.537 kb on - strand, within ABIE40_RS04470at 881.686 kb on + strandat 881.809 kb on + strandat 881.810 kb on - strandat 881.957 kb on - strand, within ABIE40_RS04475at 882.004 kb on + strand, within ABIE40_RS04475at 882.004 kb on + strand, within ABIE40_RS04475at 882.004 kb on + strand, within ABIE40_RS04475at 882.004 kb on + strand, within ABIE40_RS04475at 882.004 kb on + strand, within ABIE40_RS04475at 882.005 kb on - strand, within ABIE40_RS04475at 882.005 kb on - strand, within ABIE40_RS04475at 882.005 kb on - strand, within ABIE40_RS04475at 882.005 kb on - strand, within ABIE40_RS04475at 882.074 kb on - strand, within ABIE40_RS04475at 882.217 kb on + strand, within ABIE40_RS04475at 882.217 kb on + strand, within ABIE40_RS04475at 882.235 kb on + strand, within ABIE40_RS04475at 882.235 kb on + strand, within ABIE40_RS04475at 882.235 kb on + strand, within ABIE40_RS04475at 882.247 kb on + strand, within ABIE40_RS04475at 882.247 kb on + strand, within ABIE40_RS04475at 882.248 kb on - strand, within ABIE40_RS04475at 882.248 kb on - strand, within ABIE40_RS04475at 882.277 kb on + strand, within ABIE40_RS04475at 882.277 kb on + strand, within ABIE40_RS04475at 882.278 kb on - strand, within ABIE40_RS04475at 882.298 kb on + strand, within ABIE40_RS04475at 882.298 kb on + strand, within ABIE40_RS04475at 882.298 kb on + strand, within ABIE40_RS04475at 882.298 kb on + strand, within ABIE40_RS04475at 882.299 kb on - strand, within ABIE40_RS04475at 882.437 kb on + strand, within ABIE40_RS04475at 882.437 kb on + strand, within ABIE40_RS04475at 882.438 kb on - strand, within ABIE40_RS04475at 882.492 kb on + strandat 882.493 kb on - strandat 882.536 kb on + strandat 882.536 kb on + strandat 882.536 kb on + strandat 882.537 kb on - strandat 882.537 kb on - strandat 882.537 kb on - strandat 882.537 kb on - strandat 882.542 kb on + strandat 882.632 kb on + strand, within ABIE40_RS04480at 882.632 kb on + strand, within ABIE40_RS04480at 882.632 kb on + strand, within ABIE40_RS04480at 882.632 kb on + strand, within ABIE40_RS04480at 882.632 kb on + strand, within ABIE40_RS04480at 882.633 kb on - strand, within ABIE40_RS04480at 882.633 kb on - strand, within ABIE40_RS04480at 882.633 kb on - strand, within ABIE40_RS04480at 882.633 kb on - strand, within ABIE40_RS04480at 882.647 kb on - strand, within ABIE40_RS04480at 882.647 kb on - strand, within ABIE40_RS04480at 882.806 kb on - strandat 882.811 kb on + strandat 882.811 kb on + strandat 882.811 kb on + strandat 882.812 kb on - strandat 882.812 kb on - strandat 882.812 kb on - strandat 882.812 kb on - strandat 882.854 kb on + strandat 882.855 kb on - strandat 882.907 kb on + strandat 882.908 kb on - strandat 882.970 kb on - strandat 882.970 kb on - strandat 882.978 kb on + strandat 882.978 kb on + strandat 882.995 kb on - strandat 882.995 kb on - strandat 883.060 kb on - strand, within ABIE40_RS04485at 883.060 kb on - strand, within ABIE40_RS04485at 883.417 kb on + strandat 883.418 kb on - strandat 883.495 kb on + strandat 883.496 kb on - strandat 883.496 kb on - strandat 883.527 kb on + strandat 883.527 kb on + strandat 883.527 kb on + strandat 883.527 kb on + strandat 883.527 kb on + strandat 883.527 kb on + strandat 883.527 kb on + strandat 883.527 kb on + strandat 883.528 kb on - strandat 883.528 kb on - strandat 883.531 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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880,909 + ABIE40_RS04470 0.19 -2.3
880,909 + ABIE40_RS04470 0.19 -2.8
880,909 + ABIE40_RS04470 0.19 -1.8
880,909 + ABIE40_RS04470 0.19 -0.4
880,909 + ABIE40_RS04470 0.19 -1.7
880,909 + ABIE40_RS04470 0.19 -3.1
880,909 + ABIE40_RS04470 0.19 -2.8
880,909 + ABIE40_RS04470 0.19 -0.5
880,909 + ABIE40_RS04470 0.19 -2.0
880,910 - ABIE40_RS04470 0.19 -2.8
880,910 - ABIE40_RS04470 0.19 -2.6
880,910 - ABIE40_RS04470 0.19 -2.0
880,910 - ABIE40_RS04470 0.19 -2.9
880,910 - ABIE40_RS04470 0.19 -1.9
880,910 - ABIE40_RS04470 0.19 -2.7
880,910 - ABIE40_RS04470 0.19 -2.8
881,011 + ABIE40_RS04470 0.30 -3.0
881,011 + ABIE40_RS04470 0.30 -3.8
881,011 + ABIE40_RS04470 0.30 -1.3
881,057 + ABIE40_RS04470 0.34 -2.1
881,058 - ABIE40_RS04470 0.35 -1.2
881,123 + ABIE40_RS04470 0.41 -0.5
881,124 - ABIE40_RS04470 0.42 -1.0
881,124 - ABIE40_RS04470 0.42 -1.6
881,125 + ABIE40_RS04470 0.42 -1.9
881,125 + ABIE40_RS04470 0.42 -2.5
881,125 + ABIE40_RS04470 0.42 -1.3
881,125 + ABIE40_RS04470 0.42 -2.3
881,125 + ABIE40_RS04470 0.42 -3.2
881,125 + ABIE40_RS04470 0.42 -2.6
881,126 - ABIE40_RS04470 0.42 -3.8
881,126 - ABIE40_RS04470 0.42 -2.7
881,126 - ABIE40_RS04470 0.42 -3.6
881,126 - ABIE40_RS04470 0.42 -1.3
881,126 - ABIE40_RS04470 0.42 -1.5
881,126 - ABIE40_RS04470 0.42 +1.1
881,126 - ABIE40_RS04470 0.42 -1.8
881,126 - ABIE40_RS04470 0.42 -2.5
881,126 - ABIE40_RS04470 0.42 -3.1
881,126 - ABIE40_RS04470 0.42 -2.2
881,126 - ABIE40_RS04470 0.42 -5.0
881,126 - ABIE40_RS04470 0.42 -4.0
881,191 + ABIE40_RS04470 0.49 +1.5
881,191 + ABIE40_RS04470 0.49 -4.1
881,191 + ABIE40_RS04470 0.49 -3.2
881,191 + ABIE40_RS04470 0.49 +1.0
881,191 + ABIE40_RS04470 0.49 -1.0
881,192 - ABIE40_RS04470 0.49 -2.5
881,192 - ABIE40_RS04470 0.49 -3.5
881,306 + ABIE40_RS04470 0.61 -2.8
881,307 - ABIE40_RS04470 0.61 -1.2
881,308 + ABIE40_RS04470 0.61 -2.8
881,308 + ABIE40_RS04470 0.61 -2.8
881,309 - ABIE40_RS04470 0.61 -2.7
881,309 - ABIE40_RS04470 0.61 -2.6
881,323 + ABIE40_RS04470 0.62 -3.2
881,323 + ABIE40_RS04470 0.62 -4.5
881,324 - ABIE40_RS04470 0.62 -2.1
881,324 - ABIE40_RS04470 0.62 -1.3
881,324 - ABIE40_RS04470 0.62 -1.6
881,324 - ABIE40_RS04470 0.62 -1.0
881,324 - ABIE40_RS04470 0.62 -4.2
881,389 + ABIE40_RS04470 0.69 -3.8
881,389 + ABIE40_RS04470 0.69 +2.0
881,390 - ABIE40_RS04470 0.69 -2.3
881,390 - ABIE40_RS04470 0.69 -1.3
881,482 + ABIE40_RS04470 0.79 -2.5
881,483 - ABIE40_RS04470 0.79 -2.2
881,483 - ABIE40_RS04470 0.79 -3.2
881,536 + ABIE40_RS04470 0.85 -1.4
881,537 - ABIE40_RS04470 0.85 -1.5
881,686 + -2.8
881,809 + +0.5
881,810 - -0.1
881,957 - ABIE40_RS04475 0.20 -1.6
882,004 + ABIE40_RS04475 0.26 -0.0
882,004 + ABIE40_RS04475 0.26 -2.4
882,004 + ABIE40_RS04475 0.26 -2.2
882,004 + ABIE40_RS04475 0.26 -2.1
882,004 + ABIE40_RS04475 0.26 -3.3
882,005 - ABIE40_RS04475 0.26 -1.2
882,005 - ABIE40_RS04475 0.26 -2.6
882,005 - ABIE40_RS04475 0.26 -3.8
882,005 - ABIE40_RS04475 0.26 -3.0
882,074 - ABIE40_RS04475 0.36 -2.2
882,217 + ABIE40_RS04475 0.55 -4.0
882,217 + ABIE40_RS04475 0.55 -2.5
882,235 + ABIE40_RS04475 0.57 -1.4
882,235 + ABIE40_RS04475 0.57 -3.4
882,235 + ABIE40_RS04475 0.57 -4.2
882,247 + ABIE40_RS04475 0.59 -1.5
882,247 + ABIE40_RS04475 0.59 -3.0
882,248 - ABIE40_RS04475 0.59 -4.9
882,248 - ABIE40_RS04475 0.59 -4.0
882,277 + ABIE40_RS04475 0.63 -3.9
882,277 + ABIE40_RS04475 0.63 -2.5
882,278 - ABIE40_RS04475 0.63 -2.4
882,298 + ABIE40_RS04475 0.66 -2.1
882,298 + ABIE40_RS04475 0.66 -2.0
882,298 + ABIE40_RS04475 0.66 -2.0
882,298 + ABIE40_RS04475 0.66 +1.5
882,299 - ABIE40_RS04475 0.66 -2.6
882,437 + ABIE40_RS04475 0.85 -2.7
882,437 + ABIE40_RS04475 0.85 -2.7
882,438 - ABIE40_RS04475 0.85 -3.3
882,492 + -1.3
882,493 - -2.0
882,536 + -2.2
882,536 + -3.2
882,536 + -1.0
882,537 - -1.7
882,537 - -2.9
882,537 - -2.9
882,537 - -2.0
882,542 + -2.2
882,632 + ABIE40_RS04480 0.38 -3.0
882,632 + ABIE40_RS04480 0.38 -2.7
882,632 + ABIE40_RS04480 0.38 -3.4
882,632 + ABIE40_RS04480 0.38 -1.3
882,632 + ABIE40_RS04480 0.38 +0.3
882,633 - ABIE40_RS04480 0.38 -1.3
882,633 - ABIE40_RS04480 0.38 -0.3
882,633 - ABIE40_RS04480 0.38 -1.5
882,633 - ABIE40_RS04480 0.38 +0.4
882,647 - ABIE40_RS04480 0.45 +0.6
882,647 - ABIE40_RS04480 0.45 +0.3
882,806 - +0.5
882,811 + -0.6
882,811 + -1.1
882,811 + +0.7
882,812 - +1.3
882,812 - -0.2
882,812 - -0.2
882,812 - +1.1
882,854 + -0.8
882,855 - -0.3
882,907 + -0.8
882,908 - -1.1
882,970 - +0.6
882,970 - +0.0
882,978 + +1.5
882,978 + +0.2
882,995 - -0.1
882,995 - +1.1
883,060 - ABIE40_RS04485 0.19 -0.4
883,060 - ABIE40_RS04485 0.19 +0.4
883,417 + -0.9
883,418 - -1.3
883,495 + -0.5
883,496 - -0.2
883,496 - -0.8
883,527 + -0.2
883,527 + -0.2
883,527 + -1.0
883,527 + +1.2
883,527 + -0.5
883,527 + -0.3
883,527 + -0.1
883,527 + -0.8
883,528 - -0.1
883,528 - +1.2
883,531 + +1.0

Or see this region's nucleotide sequence