Experiment: L-Glutamine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS03180 and ABIE40_RS03185 are separated by 175 nucleotides ABIE40_RS03185 and ABIE40_RS03190 are separated by 56 nucleotides ABIE40_RS03190 and ABIE40_RS03195 are separated by 65 nucleotides ABIE40_RS03195 and ABIE40_RS03200 are separated by 11 nucleotides
ABIE40_RS03180: ABIE40_RS03180 - sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC, at 627,939 to 629,027
_RS03180
ABIE40_RS03185: ABIE40_RS03185 - hypothetical protein, at 629,203 to 629,556
_RS03185
ABIE40_RS03190: ABIE40_RS03190 - phosphogluconate dehydratase, at 629,613 to 631,433
_RS03190
ABIE40_RS03195: ABIE40_RS03195 - 6-phosphogluconolactonase, at 631,499 to 632,197
_RS03195
ABIE40_RS03200: ABIE40_RS03200 - glucose-6-phosphate dehydrogenase, at 632,209 to 633,684
_RS03200
Position (kb) 629
630
631
632 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 628.665 kb on - strand, within ABIE40_RS03180 at 628.691 kb on + strand, within ABIE40_RS03180 at 628.692 kb on - strand, within ABIE40_RS03180 at 628.824 kb on + strand, within ABIE40_RS03180 at 628.824 kb on + strand, within ABIE40_RS03180 at 628.825 kb on - strand, within ABIE40_RS03180 at 628.825 kb on - strand, within ABIE40_RS03180 at 628.825 kb on - strand, within ABIE40_RS03180 at 628.881 kb on + strand, within ABIE40_RS03180 at 628.881 kb on + strand, within ABIE40_RS03180 at 628.882 kb on - strand, within ABIE40_RS03180 at 628.882 kb on - strand, within ABIE40_RS03180 at 628.883 kb on + strand, within ABIE40_RS03180 at 628.884 kb on - strand, within ABIE40_RS03180 at 628.884 kb on - strand, within ABIE40_RS03180 at 629.017 kb on - strand at 629.017 kb on - strand at 629.086 kb on + strand at 629.087 kb on - strand at 629.096 kb on + strand at 629.096 kb on + strand at 629.096 kb on + strand at 629.097 kb on - strand at 629.110 kb on + strand at 629.111 kb on - strand at 629.111 kb on - strand at 629.111 kb on - strand at 629.126 kb on + strand at 629.126 kb on + strand at 629.126 kb on + strand at 629.126 kb on + strand at 629.126 kb on + strand at 629.126 kb on + strand at 629.126 kb on + strand at 629.127 kb on - strand at 629.127 kb on - strand at 629.127 kb on - strand at 629.127 kb on - strand at 629.127 kb on - strand at 629.127 kb on - strand at 629.127 kb on - strand at 629.139 kb on + strand at 629.152 kb on - strand at 629.187 kb on + strand at 629.206 kb on + strand at 629.206 kb on + strand at 629.206 kb on + strand at 629.206 kb on + strand at 629.206 kb on + strand at 629.206 kb on + strand at 629.206 kb on + strand at 629.206 kb on + strand at 629.207 kb on - strand at 629.207 kb on - strand at 629.263 kb on + strand, within ABIE40_RS03185 at 629.263 kb on + strand, within ABIE40_RS03185 at 629.263 kb on + strand, within ABIE40_RS03185 at 629.264 kb on - strand, within ABIE40_RS03185 at 629.264 kb on - strand, within ABIE40_RS03185 at 629.264 kb on - strand, within ABIE40_RS03185 at 629.264 kb on - strand, within ABIE40_RS03185 at 629.264 kb on - strand, within ABIE40_RS03185 at 629.266 kb on - strand, within ABIE40_RS03185 at 629.377 kb on + strand, within ABIE40_RS03185 at 629.377 kb on + strand, within ABIE40_RS03185 at 629.377 kb on + strand, within ABIE40_RS03185 at 629.385 kb on + strand, within ABIE40_RS03185 at 629.385 kb on + strand, within ABIE40_RS03185 at 629.386 kb on - strand, within ABIE40_RS03185 at 629.506 kb on + strand, within ABIE40_RS03185 at 629.506 kb on + strand, within ABIE40_RS03185 at 629.533 kb on + strand at 629.533 kb on + strand at 629.799 kb on - strand, within ABIE40_RS03190 at 630.284 kb on + strand, within ABIE40_RS03190 at 630.284 kb on + strand, within ABIE40_RS03190 at 630.285 kb on - strand, within ABIE40_RS03190 at 630.286 kb on + strand, within ABIE40_RS03190 at 630.461 kb on + strand, within ABIE40_RS03190 at 630.461 kb on + strand, within ABIE40_RS03190 at 630.462 kb on - strand, within ABIE40_RS03190 at 630.518 kb on + strand, within ABIE40_RS03190 at 630.519 kb on - strand, within ABIE40_RS03190 at 630.519 kb on - strand, within ABIE40_RS03190 at 630.757 kb on + strand, within ABIE40_RS03190 at 630.758 kb on - strand, within ABIE40_RS03190 at 630.784 kb on + strand, within ABIE40_RS03190 at 630.838 kb on + strand, within ABIE40_RS03190 at 631.082 kb on + strand, within ABIE40_RS03190 at 631.082 kb on + strand, within ABIE40_RS03190 at 631.206 kb on - strand, within ABIE40_RS03190 at 631.206 kb on - strand, within ABIE40_RS03190 at 631.207 kb on + strand, within ABIE40_RS03190 at 631.313 kb on + strand at 631.314 kb on - strand at 631.441 kb on - strand at 631.441 kb on - strand at 631.468 kb on + strand at 631.469 kb on - strand at 631.469 kb on - strand at 631.469 kb on - strand at 631.469 kb on - strand at 632.211 kb on - strand at 632.211 kb on - strand at 632.211 kb on - strand at 632.211 kb on - strand at 632.211 kb on - strand at 632.257 kb on - strand at 632.257 kb on - strand at 632.257 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (C) remove 628,665 - ABIE40_RS03180 0.67 -0.5 628,691 + ABIE40_RS03180 0.69 +0.0 628,692 - ABIE40_RS03180 0.69 +0.6 628,824 + ABIE40_RS03180 0.81 +0.1 628,824 + ABIE40_RS03180 0.81 -0.7 628,825 - ABIE40_RS03180 0.81 +0.7 628,825 - ABIE40_RS03180 0.81 -1.0 628,825 - ABIE40_RS03180 0.81 +0.1 628,881 + ABIE40_RS03180 0.87 +2.6 628,881 + ABIE40_RS03180 0.87 +0.6 628,882 - ABIE40_RS03180 0.87 +0.5 628,882 - ABIE40_RS03180 0.87 +0.0 628,883 + ABIE40_RS03180 0.87 -0.9 628,884 - ABIE40_RS03180 0.87 +0.4 628,884 - ABIE40_RS03180 0.87 +0.3 629,017 - +0.5 629,017 - +0.2 629,086 + +1.0 629,087 - +0.2 629,096 + -0.1 629,096 + -0.7 629,096 + -2.0 629,097 - +2.4 629,110 + +0.2 629,111 - +0.4 629,111 - +0.4 629,111 - +0.3 629,126 + -2.2 629,126 + +0.3 629,126 + +0.9 629,126 + +0.4 629,126 + -0.9 629,126 + -0.8 629,126 + -0.6 629,127 - +0.5 629,127 - +0.7 629,127 - +0.3 629,127 - -0.8 629,127 - -0.3 629,127 - +0.6 629,127 - +1.6 629,139 + +0.3 629,152 - -1.2 629,187 + -0.3 629,206 + +0.1 629,206 + +1.0 629,206 + +1.6 629,206 + -0.5 629,206 + -1.3 629,206 + -0.5 629,206 + +1.1 629,206 + -0.4 629,207 - -0.6 629,207 - +1.6 629,263 + ABIE40_RS03185 0.17 +1.4 629,263 + ABIE40_RS03185 0.17 +1.0 629,263 + ABIE40_RS03185 0.17 -0.7 629,264 - ABIE40_RS03185 0.17 -0.7 629,264 - ABIE40_RS03185 0.17 -2.4 629,264 - ABIE40_RS03185 0.17 +0.7 629,264 - ABIE40_RS03185 0.17 +0.2 629,264 - ABIE40_RS03185 0.17 +0.5 629,266 - ABIE40_RS03185 0.18 +0.3 629,377 + ABIE40_RS03185 0.49 +1.6 629,377 + ABIE40_RS03185 0.49 -0.7 629,377 + ABIE40_RS03185 0.49 -0.7 629,385 + ABIE40_RS03185 0.51 -0.4 629,385 + ABIE40_RS03185 0.51 +0.8 629,386 - ABIE40_RS03185 0.52 +2.4 629,506 + ABIE40_RS03185 0.86 -0.6 629,506 + ABIE40_RS03185 0.86 +2.8 629,533 + +1.3 629,533 + -0.2 629,799 - ABIE40_RS03190 0.10 -2.1 630,284 + ABIE40_RS03190 0.37 -1.7 630,284 + ABIE40_RS03190 0.37 -1.9 630,285 - ABIE40_RS03190 0.37 -2.0 630,286 + ABIE40_RS03190 0.37 -1.6 630,461 + ABIE40_RS03190 0.47 -2.0 630,461 + ABIE40_RS03190 0.47 -1.2 630,462 - ABIE40_RS03190 0.47 -0.7 630,518 + ABIE40_RS03190 0.50 -1.9 630,519 - ABIE40_RS03190 0.50 +0.6 630,519 - ABIE40_RS03190 0.50 -2.8 630,757 + ABIE40_RS03190 0.63 -2.5 630,758 - ABIE40_RS03190 0.63 -0.7 630,784 + ABIE40_RS03190 0.64 -0.9 630,838 + ABIE40_RS03190 0.67 +0.4 631,082 + ABIE40_RS03190 0.81 -1.0 631,082 + ABIE40_RS03190 0.81 +0.6 631,206 - ABIE40_RS03190 0.87 -2.3 631,206 - ABIE40_RS03190 0.87 -2.3 631,207 + ABIE40_RS03190 0.88 -2.1 631,313 + -0.4 631,314 - -1.0 631,441 - -2.6 631,441 - -3.2 631,468 + -2.1 631,469 - -0.5 631,469 - -0.3 631,469 - +0.3 631,469 - +0.0 632,211 - -0.3 632,211 - -0.9 632,211 - -0.8 632,211 - +0.0 632,211 - -0.6 632,257 - -1.7 632,257 - +0.0 632,257 - -1.9
Or see this region's nucleotide sequence