Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS02725

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS02715 and ABIE40_RS02720 are separated by 154 nucleotidesABIE40_RS02720 and ABIE40_RS02725 are separated by 53 nucleotidesABIE40_RS02725 and ABIE40_RS02730 are separated by 3 nucleotidesABIE40_RS02730 and ABIE40_RS02735 are separated by 5 nucleotides ABIE40_RS02715: ABIE40_RS02715 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 537,572 to 538,864 _RS02715 ABIE40_RS02720: ABIE40_RS02720 - DUF2948 family protein, at 539,019 to 539,456 _RS02720 ABIE40_RS02725: ABIE40_RS02725 - histidinol dehydrogenase, at 539,510 to 540,808 _RS02725 ABIE40_RS02730: ABIE40_RS02730 - UPF0262 family protein, at 540,812 to 541,285 _RS02730 ABIE40_RS02735: ABIE40_RS02735 - low molecular weight phosphatase family protein, at 541,291 to 541,767 _RS02735 Position (kb) 539 540 541Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 538.888 kb on + strandat 538.888 kb on + strandat 538.888 kb on + strandat 538.889 kb on - strandat 538.889 kb on - strandat 538.889 kb on - strandat 538.953 kb on + strandat 538.954 kb on - strandat 538.966 kb on + strandat 538.966 kb on + strandat 538.966 kb on + strandat 538.967 kb on - strandat 538.980 kb on - strandat 538.980 kb on - strandat 539.010 kb on - strandat 539.342 kb on + strand, within ABIE40_RS02720at 539.342 kb on + strand, within ABIE40_RS02720at 539.343 kb on - strand, within ABIE40_RS02720at 539.343 kb on - strand, within ABIE40_RS02720at 539.406 kb on - strand, within ABIE40_RS02720at 539.830 kb on + strand, within ABIE40_RS02725at 539.830 kb on + strand, within ABIE40_RS02725at 539.830 kb on + strand, within ABIE40_RS02725at 539.831 kb on - strand, within ABIE40_RS02725at 539.831 kb on - strand, within ABIE40_RS02725at 539.831 kb on - strand, within ABIE40_RS02725at 539.834 kb on + strand, within ABIE40_RS02725at 539.834 kb on + strand, within ABIE40_RS02725at 539.835 kb on - strand, within ABIE40_RS02725at 539.835 kb on - strand, within ABIE40_RS02725at 539.835 kb on - strand, within ABIE40_RS02725at 539.835 kb on - strand, within ABIE40_RS02725at 539.897 kb on + strand, within ABIE40_RS02725at 539.897 kb on + strand, within ABIE40_RS02725at 539.898 kb on - strand, within ABIE40_RS02725at 539.898 kb on - strand, within ABIE40_RS02725at 540.062 kb on + strand, within ABIE40_RS02725at 540.063 kb on - strand, within ABIE40_RS02725at 540.063 kb on - strand, within ABIE40_RS02725at 540.101 kb on + strand, within ABIE40_RS02725at 540.102 kb on - strand, within ABIE40_RS02725at 540.107 kb on - strand, within ABIE40_RS02725at 540.155 kb on + strand, within ABIE40_RS02725at 540.155 kb on + strand, within ABIE40_RS02725at 540.156 kb on - strand, within ABIE40_RS02725at 540.156 kb on - strand, within ABIE40_RS02725at 540.409 kb on + strand, within ABIE40_RS02725at 540.593 kb on + strand, within ABIE40_RS02725at 540.593 kb on + strand, within ABIE40_RS02725at 540.594 kb on - strand, within ABIE40_RS02725at 540.594 kb on - strand, within ABIE40_RS02725at 540.962 kb on + strand, within ABIE40_RS02730at 540.962 kb on + strand, within ABIE40_RS02730at 540.962 kb on + strand, within ABIE40_RS02730at 540.963 kb on - strand, within ABIE40_RS02730at 540.963 kb on - strand, within ABIE40_RS02730at 540.963 kb on - strand, within ABIE40_RS02730at 540.963 kb on - strand, within ABIE40_RS02730at 541.042 kb on + strand, within ABIE40_RS02730at 541.082 kb on + strand, within ABIE40_RS02730at 541.082 kb on + strand, within ABIE40_RS02730at 541.083 kb on - strand, within ABIE40_RS02730at 541.083 kb on - strand, within ABIE40_RS02730at 541.083 kb on - strand, within ABIE40_RS02730at 541.083 kb on - strand, within ABIE40_RS02730at 541.103 kb on + strand, within ABIE40_RS02730at 541.103 kb on + strand, within ABIE40_RS02730at 541.104 kb on - strand, within ABIE40_RS02730at 541.104 kb on - strand, within ABIE40_RS02730at 541.104 kb on - strand, within ABIE40_RS02730at 541.106 kb on + strand, within ABIE40_RS02730at 541.106 kb on + strand, within ABIE40_RS02730at 541.106 kb on + strand, within ABIE40_RS02730at 541.107 kb on - strand, within ABIE40_RS02730at 541.107 kb on - strand, within ABIE40_RS02730at 541.107 kb on - strand, within ABIE40_RS02730at 541.271 kb on + strandat 541.271 kb on + strandat 541.272 kb on - strandat 541.272 kb on - strandat 541.413 kb on + strand, within ABIE40_RS02735at 541.413 kb on + strand, within ABIE40_RS02735at 541.413 kb on + strand, within ABIE40_RS02735at 541.413 kb on + strand, within ABIE40_RS02735at 541.413 kb on + strand, within ABIE40_RS02735at 541.414 kb on - strand, within ABIE40_RS02735at 541.414 kb on - strand, within ABIE40_RS02735at 541.414 kb on - strand, within ABIE40_RS02735at 541.414 kb on - strand, within ABIE40_RS02735at 541.414 kb on - strand, within ABIE40_RS02735at 541.414 kb on - strand, within ABIE40_RS02735at 541.417 kb on + strand, within ABIE40_RS02735at 541.417 kb on + strand, within ABIE40_RS02735at 541.417 kb on + strand, within ABIE40_RS02735at 541.417 kb on + strand, within ABIE40_RS02735at 541.417 kb on + strand, within ABIE40_RS02735at 541.417 kb on + strand, within ABIE40_RS02735at 541.417 kb on + strand, within ABIE40_RS02735at 541.417 kb on + strand, within ABIE40_RS02735at 541.417 kb on + strand, within ABIE40_RS02735at 541.417 kb on + strand, within ABIE40_RS02735at 541.417 kb on + strand, within ABIE40_RS02735at 541.417 kb on + strand, within ABIE40_RS02735at 541.417 kb on + strand, within ABIE40_RS02735at 541.417 kb on + strand, within ABIE40_RS02735at 541.418 kb on - strand, within ABIE40_RS02735at 541.418 kb on - strand, within ABIE40_RS02735at 541.418 kb on - strand, within ABIE40_RS02735at 541.418 kb on - strand, within ABIE40_RS02735at 541.418 kb on - strand, within ABIE40_RS02735at 541.418 kb on - strand, within ABIE40_RS02735at 541.418 kb on - strand, within ABIE40_RS02735at 541.418 kb on - strand, within ABIE40_RS02735at 541.418 kb on - strand, within ABIE40_RS02735at 541.418 kb on - strand, within ABIE40_RS02735at 541.418 kb on - strand, within ABIE40_RS02735at 541.418 kb on - strand, within ABIE40_RS02735at 541.419 kb on + strand, within ABIE40_RS02735at 541.419 kb on + strand, within ABIE40_RS02735at 541.419 kb on + strand, within ABIE40_RS02735at 541.420 kb on - strand, within ABIE40_RS02735at 541.420 kb on - strand, within ABIE40_RS02735at 541.420 kb on - strand, within ABIE40_RS02735at 541.420 kb on - strand, within ABIE40_RS02735at 541.420 kb on - strand, within ABIE40_RS02735at 541.421 kb on + strand, within ABIE40_RS02735at 541.421 kb on + strand, within ABIE40_RS02735at 541.421 kb on + strand, within ABIE40_RS02735at 541.421 kb on + strand, within ABIE40_RS02735at 541.421 kb on + strand, within ABIE40_RS02735at 541.421 kb on + strand, within ABIE40_RS02735at 541.421 kb on + strand, within ABIE40_RS02735at 541.421 kb on + strand, within ABIE40_RS02735at 541.421 kb on + strand, within ABIE40_RS02735at 541.421 kb on + strand, within ABIE40_RS02735at 541.421 kb on + strand, within ABIE40_RS02735at 541.421 kb on + strand, within ABIE40_RS02735at 541.421 kb on + strand, within ABIE40_RS02735at 541.421 kb on + strand, within ABIE40_RS02735at 541.422 kb on - strand, within ABIE40_RS02735at 541.422 kb on - strand, within ABIE40_RS02735at 541.422 kb on - strand, within ABIE40_RS02735at 541.422 kb on - strand, within ABIE40_RS02735at 541.422 kb on - strand, within ABIE40_RS02735at 541.422 kb on - strand, within ABIE40_RS02735at 541.422 kb on - strand, within ABIE40_RS02735at 541.422 kb on - strand, within ABIE40_RS02735at 541.422 kb on - strand, within ABIE40_RS02735at 541.422 kb on - strand, within ABIE40_RS02735at 541.422 kb on - strand, within ABIE40_RS02735at 541.422 kb on - strand, within ABIE40_RS02735at 541.422 kb on - strand, within ABIE40_RS02735at 541.540 kb on + strand, within ABIE40_RS02735at 541.541 kb on - strand, within ABIE40_RS02735at 541.624 kb on + strand, within ABIE40_RS02735at 541.624 kb on + strand, within ABIE40_RS02735at 541.624 kb on + strand, within ABIE40_RS02735at 541.624 kb on + strand, within ABIE40_RS02735at 541.625 kb on - strand, within ABIE40_RS02735at 541.625 kb on - strand, within ABIE40_RS02735at 541.685 kb on - strand, within ABIE40_RS02735at 541.685 kb on - strand, within ABIE40_RS02735at 541.686 kb on + strand, within ABIE40_RS02735at 541.687 kb on - strand, within ABIE40_RS02735at 541.687 kb on - strand, within ABIE40_RS02735at 541.687 kb on - strand, within ABIE40_RS02735at 541.687 kb on - strand, within ABIE40_RS02735at 541.687 kb on - strand, within ABIE40_RS02735at 541.694 kb on + strand, within ABIE40_RS02735at 541.695 kb on - strand, within ABIE40_RS02735at 541.706 kb on + strand, within ABIE40_RS02735at 541.707 kb on - strand, within ABIE40_RS02735at 541.793 kb on + strandat 541.793 kb on + strandat 541.793 kb on + strandat 541.793 kb on + strandat 541.793 kb on + strandat 541.793 kb on + strandat 541.793 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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538,888 + +0.1
538,888 + +1.9
538,888 + -0.6
538,889 - +1.0
538,889 - -2.3
538,889 - -1.5
538,953 + -0.6
538,954 - -0.5
538,966 + -0.2
538,966 + -1.3
538,966 + +0.1
538,967 - -0.2
538,980 - +1.7
538,980 - +0.2
539,010 - -0.2
539,342 + ABIE40_RS02720 0.74 +0.2
539,342 + ABIE40_RS02720 0.74 -0.1
539,343 - ABIE40_RS02720 0.74 +1.7
539,343 - ABIE40_RS02720 0.74 -0.6
539,406 - ABIE40_RS02720 0.88 -2.7
539,830 + ABIE40_RS02725 0.25 -1.2
539,830 + ABIE40_RS02725 0.25 +0.1
539,830 + ABIE40_RS02725 0.25 -4.2
539,831 - ABIE40_RS02725 0.25 -1.9
539,831 - ABIE40_RS02725 0.25 -2.8
539,831 - ABIE40_RS02725 0.25 -4.3
539,834 + ABIE40_RS02725 0.25 -1.9
539,834 + ABIE40_RS02725 0.25 -1.9
539,835 - ABIE40_RS02725 0.25 -0.9
539,835 - ABIE40_RS02725 0.25 -1.3
539,835 - ABIE40_RS02725 0.25 -4.1
539,835 - ABIE40_RS02725 0.25 -3.5
539,897 + ABIE40_RS02725 0.30 -3.0
539,897 + ABIE40_RS02725 0.30 -3.5
539,898 - ABIE40_RS02725 0.30 -3.0
539,898 - ABIE40_RS02725 0.30 -2.3
540,062 + ABIE40_RS02725 0.42 -0.9
540,063 - ABIE40_RS02725 0.43 -3.0
540,063 - ABIE40_RS02725 0.43 -2.9
540,101 + ABIE40_RS02725 0.45 -2.0
540,102 - ABIE40_RS02725 0.46 -2.5
540,107 - ABIE40_RS02725 0.46 +1.7
540,155 + ABIE40_RS02725 0.50 -1.7
540,155 + ABIE40_RS02725 0.50 -3.1
540,156 - ABIE40_RS02725 0.50 -3.0
540,156 - ABIE40_RS02725 0.50 -2.5
540,409 + ABIE40_RS02725 0.69 -2.3
540,593 + ABIE40_RS02725 0.83 -3.3
540,593 + ABIE40_RS02725 0.83 -1.7
540,594 - ABIE40_RS02725 0.83 -0.7
540,594 - ABIE40_RS02725 0.83 -3.9
540,962 + ABIE40_RS02730 0.32 -0.7
540,962 + ABIE40_RS02730 0.32 +0.7
540,962 + ABIE40_RS02730 0.32 -0.2
540,963 - ABIE40_RS02730 0.32 +0.1
540,963 - ABIE40_RS02730 0.32 +0.2
540,963 - ABIE40_RS02730 0.32 +0.0
540,963 - ABIE40_RS02730 0.32 -0.1
541,042 + ABIE40_RS02730 0.49 -2.2
541,082 + ABIE40_RS02730 0.57 -1.2
541,082 + ABIE40_RS02730 0.57 -0.1
541,083 - ABIE40_RS02730 0.57 +0.4
541,083 - ABIE40_RS02730 0.57 -0.5
541,083 - ABIE40_RS02730 0.57 +1.2
541,083 - ABIE40_RS02730 0.57 +2.7
541,103 + ABIE40_RS02730 0.61 -0.2
541,103 + ABIE40_RS02730 0.61 -1.4
541,104 - ABIE40_RS02730 0.62 +0.7
541,104 - ABIE40_RS02730 0.62 -0.3
541,104 - ABIE40_RS02730 0.62 -0.5
541,106 + ABIE40_RS02730 0.62 -2.2
541,106 + ABIE40_RS02730 0.62 -0.3
541,106 + ABIE40_RS02730 0.62 -0.6
541,107 - ABIE40_RS02730 0.62 +0.4
541,107 - ABIE40_RS02730 0.62 -0.6
541,107 - ABIE40_RS02730 0.62 -1.7
541,271 + -1.2
541,271 + -1.0
541,272 - -0.2
541,272 - +0.2
541,413 + ABIE40_RS02735 0.26 +0.2
541,413 + ABIE40_RS02735 0.26 -1.2
541,413 + ABIE40_RS02735 0.26 +0.0
541,413 + ABIE40_RS02735 0.26 +0.2
541,413 + ABIE40_RS02735 0.26 -0.1
541,414 - ABIE40_RS02735 0.26 +2.7
541,414 - ABIE40_RS02735 0.26 -3.1
541,414 - ABIE40_RS02735 0.26 -2.2
541,414 - ABIE40_RS02735 0.26 +0.5
541,414 - ABIE40_RS02735 0.26 +0.3
541,414 - ABIE40_RS02735 0.26 +0.2
541,417 + ABIE40_RS02735 0.26 -1.2
541,417 + ABIE40_RS02735 0.26 -1.2
541,417 + ABIE40_RS02735 0.26 -0.6
541,417 + ABIE40_RS02735 0.26 +0.3
541,417 + ABIE40_RS02735 0.26 +0.1
541,417 + ABIE40_RS02735 0.26 +0.3
541,417 + ABIE40_RS02735 0.26 -0.7
541,417 + ABIE40_RS02735 0.26 -1.3
541,417 + ABIE40_RS02735 0.26 -0.1
541,417 + ABIE40_RS02735 0.26 +1.0
541,417 + ABIE40_RS02735 0.26 -0.9
541,417 + ABIE40_RS02735 0.26 -0.3
541,417 + ABIE40_RS02735 0.26 -1.1
541,417 + ABIE40_RS02735 0.26 +0.5
541,418 - ABIE40_RS02735 0.27 -0.3
541,418 - ABIE40_RS02735 0.27 +0.3
541,418 - ABIE40_RS02735 0.27 +0.6
541,418 - ABIE40_RS02735 0.27 +0.2
541,418 - ABIE40_RS02735 0.27 +0.9
541,418 - ABIE40_RS02735 0.27 -0.0
541,418 - ABIE40_RS02735 0.27 -2.9
541,418 - ABIE40_RS02735 0.27 -0.3
541,418 - ABIE40_RS02735 0.27 -0.3
541,418 - ABIE40_RS02735 0.27 +0.7
541,418 - ABIE40_RS02735 0.27 +0.0
541,418 - ABIE40_RS02735 0.27 -1.3
541,419 + ABIE40_RS02735 0.27 +0.3
541,419 + ABIE40_RS02735 0.27 -0.9
541,419 + ABIE40_RS02735 0.27 +0.4
541,420 - ABIE40_RS02735 0.27 +0.4
541,420 - ABIE40_RS02735 0.27 -2.2
541,420 - ABIE40_RS02735 0.27 +0.3
541,420 - ABIE40_RS02735 0.27 -0.1
541,420 - ABIE40_RS02735 0.27 -0.4
541,421 + ABIE40_RS02735 0.27 -1.0
541,421 + ABIE40_RS02735 0.27 -0.6
541,421 + ABIE40_RS02735 0.27 +1.7
541,421 + ABIE40_RS02735 0.27 -1.0
541,421 + ABIE40_RS02735 0.27 -0.6
541,421 + ABIE40_RS02735 0.27 -0.9
541,421 + ABIE40_RS02735 0.27 +0.5
541,421 + ABIE40_RS02735 0.27 -3.3
541,421 + ABIE40_RS02735 0.27 -0.4
541,421 + ABIE40_RS02735 0.27 -0.4
541,421 + ABIE40_RS02735 0.27 -0.2
541,421 + ABIE40_RS02735 0.27 +1.1
541,421 + ABIE40_RS02735 0.27 +1.2
541,421 + ABIE40_RS02735 0.27 +2.5
541,422 - ABIE40_RS02735 0.27 +0.7
541,422 - ABIE40_RS02735 0.27 +0.8
541,422 - ABIE40_RS02735 0.27 -0.1
541,422 - ABIE40_RS02735 0.27 -2.0
541,422 - ABIE40_RS02735 0.27 -0.6
541,422 - ABIE40_RS02735 0.27 -1.7
541,422 - ABIE40_RS02735 0.27 +0.5
541,422 - ABIE40_RS02735 0.27 +0.7
541,422 - ABIE40_RS02735 0.27 -0.5
541,422 - ABIE40_RS02735 0.27 +0.6
541,422 - ABIE40_RS02735 0.27 -0.0
541,422 - ABIE40_RS02735 0.27 -0.2
541,422 - ABIE40_RS02735 0.27 -0.2
541,540 + ABIE40_RS02735 0.52 -0.2
541,541 - ABIE40_RS02735 0.52 -0.5
541,624 + ABIE40_RS02735 0.70 -1.2
541,624 + ABIE40_RS02735 0.70 +1.0
541,624 + ABIE40_RS02735 0.70 +0.2
541,624 + ABIE40_RS02735 0.70 +0.0
541,625 - ABIE40_RS02735 0.70 -0.2
541,625 - ABIE40_RS02735 0.70 -0.0
541,685 - ABIE40_RS02735 0.83 -0.6
541,685 - ABIE40_RS02735 0.83 +1.7
541,686 + ABIE40_RS02735 0.83 -1.8
541,687 - ABIE40_RS02735 0.83 -0.1
541,687 - ABIE40_RS02735 0.83 +0.3
541,687 - ABIE40_RS02735 0.83 -0.0
541,687 - ABIE40_RS02735 0.83 -0.8
541,687 - ABIE40_RS02735 0.83 -0.6
541,694 + ABIE40_RS02735 0.84 +1.3
541,695 - ABIE40_RS02735 0.85 +0.0
541,706 + ABIE40_RS02735 0.87 -0.9
541,707 - ABIE40_RS02735 0.87 +0.6
541,793 + +0.6
541,793 + -0.0
541,793 + +0.2
541,793 + +0.4
541,793 + -0.5
541,793 + -0.2
541,793 + +0.4

Or see this region's nucleotide sequence