Experiment: L-Glutamine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS02165 and ABIE40_RS02170 are separated by 10 nucleotides ABIE40_RS02170 and ABIE40_RS02175 are separated by 46 nucleotides ABIE40_RS02175 and ABIE40_RS02180 overlap by 4 nucleotides ABIE40_RS02180 and ABIE40_RS02185 overlap by 4 nucleotides
ABIE40_RS02165: ABIE40_RS02165 - glycoside hydrolase family 2 protein, at 425,592 to 428,033
_RS02165
ABIE40_RS02170: ABIE40_RS02170 - VOC family protein, at 428,044 to 428,439
_RS02170
ABIE40_RS02175: ABIE40_RS02175 - ABC transporter permease, at 428,486 to 429,235
_RS02175
ABIE40_RS02180: ABIE40_RS02180 - ABC transporter ATP-binding protein, at 429,232 to 430,176
_RS02180
ABIE40_RS02185: ABIE40_RS02185 - ABC transporter permease, at 430,173 to 431,339
_RS02185
Position (kb) 428
429
430 Strain fitness (log2 ratio) -2
-1
0
1
2 at 427.502 kb on + strand, within ABIE40_RS02165 at 427.582 kb on + strand, within ABIE40_RS02165 at 427.582 kb on + strand, within ABIE40_RS02165 at 427.583 kb on - strand, within ABIE40_RS02165 at 427.603 kb on + strand, within ABIE40_RS02165 at 427.603 kb on + strand, within ABIE40_RS02165 at 427.604 kb on - strand, within ABIE40_RS02165 at 427.628 kb on - strand, within ABIE40_RS02165 at 427.628 kb on - strand, within ABIE40_RS02165 at 427.633 kb on + strand, within ABIE40_RS02165 at 427.633 kb on + strand, within ABIE40_RS02165 at 427.634 kb on - strand, within ABIE40_RS02165 at 427.634 kb on - strand, within ABIE40_RS02165 at 427.766 kb on + strand, within ABIE40_RS02165 at 427.834 kb on + strand at 427.835 kb on - strand at 427.835 kb on - strand at 427.888 kb on + strand at 427.888 kb on + strand at 427.926 kb on - strand at 428.045 kb on + strand at 428.045 kb on + strand at 428.045 kb on + strand at 428.128 kb on - strand, within ABIE40_RS02170 at 428.249 kb on + strand, within ABIE40_RS02170 at 428.249 kb on + strand, within ABIE40_RS02170 at 428.250 kb on - strand, within ABIE40_RS02170 at 428.250 kb on - strand, within ABIE40_RS02170 at 428.250 kb on - strand, within ABIE40_RS02170 at 428.250 kb on - strand, within ABIE40_RS02170 at 428.315 kb on + strand, within ABIE40_RS02170 at 428.315 kb on + strand, within ABIE40_RS02170 at 428.315 kb on + strand, within ABIE40_RS02170 at 428.316 kb on - strand, within ABIE40_RS02170 at 428.316 kb on - strand, within ABIE40_RS02170 at 428.316 kb on - strand, within ABIE40_RS02170 at 428.316 kb on - strand, within ABIE40_RS02170 at 428.450 kb on + strand at 428.450 kb on + strand at 428.450 kb on + strand at 428.450 kb on + strand at 428.451 kb on - strand at 428.475 kb on + strand at 428.475 kb on + strand at 428.476 kb on - strand at 428.476 kb on - strand at 428.509 kb on + strand at 428.509 kb on + strand at 428.510 kb on - strand at 428.515 kb on + strand at 428.547 kb on + strand at 428.547 kb on + strand at 428.547 kb on + strand at 428.547 kb on + strand at 428.548 kb on - strand at 428.548 kb on - strand at 428.603 kb on - strand, within ABIE40_RS02175 at 428.857 kb on + strand, within ABIE40_RS02175 at 428.859 kb on + strand, within ABIE40_RS02175 at 428.859 kb on + strand, within ABIE40_RS02175 at 428.859 kb on + strand, within ABIE40_RS02175 at 428.859 kb on + strand, within ABIE40_RS02175 at 428.859 kb on + strand, within ABIE40_RS02175 at 428.860 kb on - strand, within ABIE40_RS02175 at 428.860 kb on - strand, within ABIE40_RS02175 at 428.860 kb on - strand, within ABIE40_RS02175 at 428.860 kb on - strand, within ABIE40_RS02175 at 429.108 kb on + strand, within ABIE40_RS02175 at 429.109 kb on - strand, within ABIE40_RS02175 at 429.214 kb on + strand at 429.214 kb on + strand at 429.214 kb on + strand at 429.459 kb on + strand, within ABIE40_RS02180 at 429.459 kb on + strand, within ABIE40_RS02180 at 429.460 kb on - strand, within ABIE40_RS02180 at 429.460 kb on - strand, within ABIE40_RS02180 at 429.460 kb on - strand, within ABIE40_RS02180 at 429.460 kb on - strand, within ABIE40_RS02180 at 429.776 kb on + strand, within ABIE40_RS02180 at 429.777 kb on - strand, within ABIE40_RS02180 at 429.777 kb on - strand, within ABIE40_RS02180 at 429.885 kb on + strand, within ABIE40_RS02180 at 429.936 kb on - strand, within ABIE40_RS02180 at 430.191 kb on + strand at 430.192 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (C) remove 427,502 + ABIE40_RS02165 0.78 +2.2 427,582 + ABIE40_RS02165 0.81 -1.3 427,582 + ABIE40_RS02165 0.81 -0.3 427,583 - ABIE40_RS02165 0.82 -0.6 427,603 + ABIE40_RS02165 0.82 -0.1 427,603 + ABIE40_RS02165 0.82 -1.0 427,604 - ABIE40_RS02165 0.82 +1.1 427,628 - ABIE40_RS02165 0.83 -1.5 427,628 - ABIE40_RS02165 0.83 +1.1 427,633 + ABIE40_RS02165 0.84 -1.0 427,633 + ABIE40_RS02165 0.84 -0.1 427,634 - ABIE40_RS02165 0.84 -0.2 427,634 - ABIE40_RS02165 0.84 -1.1 427,766 + ABIE40_RS02165 0.89 -0.9 427,834 + -0.0 427,835 - -0.6 427,835 - +0.2 427,888 + -0.7 427,888 + -0.4 427,926 - -0.5 428,045 + -1.0 428,045 + -0.1 428,045 + +1.0 428,128 - ABIE40_RS02170 0.21 -0.6 428,249 + ABIE40_RS02170 0.52 -0.5 428,249 + ABIE40_RS02170 0.52 -0.6 428,250 - ABIE40_RS02170 0.52 +0.5 428,250 - ABIE40_RS02170 0.52 +0.3 428,250 - ABIE40_RS02170 0.52 +0.4 428,250 - ABIE40_RS02170 0.52 +0.4 428,315 + ABIE40_RS02170 0.68 +0.1 428,315 + ABIE40_RS02170 0.68 +0.3 428,315 + ABIE40_RS02170 0.68 -0.0 428,316 - ABIE40_RS02170 0.69 -0.1 428,316 - ABIE40_RS02170 0.69 +0.0 428,316 - ABIE40_RS02170 0.69 -0.9 428,316 - ABIE40_RS02170 0.69 -1.3 428,450 + -2.5 428,450 + -0.0 428,450 + -1.7 428,450 + -0.5 428,451 - -2.7 428,475 + -1.4 428,475 + -2.4 428,476 - -0.9 428,476 - +0.1 428,509 + +0.4 428,509 + -0.1 428,510 - -0.4 428,515 + -1.0 428,547 + -0.8 428,547 + -0.7 428,547 + +1.2 428,547 + -0.1 428,548 - -0.6 428,548 - +0.1 428,603 - ABIE40_RS02175 0.16 +1.0 428,857 + ABIE40_RS02175 0.49 -0.4 428,859 + ABIE40_RS02175 0.50 -0.1 428,859 + ABIE40_RS02175 0.50 +0.7 428,859 + ABIE40_RS02175 0.50 +0.5 428,859 + ABIE40_RS02175 0.50 +1.3 428,859 + ABIE40_RS02175 0.50 +1.7 428,860 - ABIE40_RS02175 0.50 -0.2 428,860 - ABIE40_RS02175 0.50 +0.1 428,860 - ABIE40_RS02175 0.50 -0.1 428,860 - ABIE40_RS02175 0.50 +0.7 429,108 + ABIE40_RS02175 0.83 -0.6 429,109 - ABIE40_RS02175 0.83 +0.6 429,214 + +1.7 429,214 + -1.6 429,214 + +0.5 429,459 + ABIE40_RS02180 0.24 -2.5 429,459 + ABIE40_RS02180 0.24 -0.6 429,460 - ABIE40_RS02180 0.24 -1.4 429,460 - ABIE40_RS02180 0.24 -0.8 429,460 - ABIE40_RS02180 0.24 -0.3 429,460 - ABIE40_RS02180 0.24 +0.2 429,776 + ABIE40_RS02180 0.58 -0.9 429,777 - ABIE40_RS02180 0.58 +0.6 429,777 - ABIE40_RS02180 0.58 -1.6 429,885 + ABIE40_RS02180 0.69 +0.4 429,936 - ABIE40_RS02180 0.74 -0.5 430,191 + +0.1 430,192 - -1.4
Or see this region's nucleotide sequence