Experiment: 2-Deoxy-D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS29045 and ABID97_RS29050 overlap by 4 nucleotides ABID97_RS29050 and ABID97_RS29055 overlap by 4 nucleotides ABID97_RS29055 and ABID97_RS29060 are separated by 23 nucleotides
ABID97_RS29045: ABID97_RS29045 - tripartite tricarboxylate transporter substrate binding protein, at 727,014 to 728,030
_RS29045
ABID97_RS29050: ABID97_RS29050 - enoyl-CoA hydratase/isomerase family protein, at 728,027 to 728,833
_RS29050
ABID97_RS29055: ABID97_RS29055 - acetate--CoA ligase family protein, at 728,830 to 730,926
_RS29055
ABID97_RS29060: ABID97_RS29060 - MmgE/PrpD family protein, at 730,950 to 732,284
_RS29060
Position (kb) 728
729
730
731 Strain fitness (log2 ratio) -1
0
1
2 at 727.948 kb on - strand at 728.163 kb on - strand, within ABID97_RS29050 at 728.163 kb on - strand, within ABID97_RS29050 at 728.447 kb on + strand, within ABID97_RS29050 at 729.482 kb on - strand, within ABID97_RS29055 at 729.641 kb on - strand, within ABID97_RS29055 at 730.017 kb on + strand, within ABID97_RS29055 at 730.084 kb on + strand, within ABID97_RS29055 at 730.085 kb on - strand, within ABID97_RS29055 at 730.966 kb on + strand at 731.053 kb on - strand at 731.108 kb on - strand, within ABID97_RS29060 at 731.242 kb on - strand, within ABID97_RS29060 at 731.242 kb on - strand, within ABID97_RS29060 at 731.242 kb on - strand, within ABID97_RS29060 at 731.242 kb on - strand, within ABID97_RS29060 at 731.874 kb on + strand, within ABID97_RS29060
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C) remove 727,948 - -0.0 728,163 - ABID97_RS29050 0.17 -0.6 728,163 - ABID97_RS29050 0.17 -0.4 728,447 + ABID97_RS29050 0.52 -1.2 729,482 - ABID97_RS29055 0.31 -0.2 729,641 - ABID97_RS29055 0.39 +0.0 730,017 + ABID97_RS29055 0.57 +2.0 730,084 + ABID97_RS29055 0.60 -0.4 730,085 - ABID97_RS29055 0.60 -0.1 730,966 + +0.8 731,053 - -1.0 731,108 - ABID97_RS29060 0.12 -0.0 731,242 - ABID97_RS29060 0.22 -0.3 731,242 - ABID97_RS29060 0.22 +2.7 731,242 - ABID97_RS29060 0.22 +1.7 731,242 - ABID97_RS29060 0.22 -0.1 731,874 + ABID97_RS29060 0.69 +1.3
Or see this region's nucleotide sequence