Strain Fitness in Variovorax sp. OAS795 around ABID97_RS24755

Experiment: 2-Deoxy-D-Ribose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS24750 and ABID97_RS24755 are separated by 201 nucleotidesABID97_RS24755 and ABID97_RS24760 are separated by 22 nucleotides ABID97_RS24750: ABID97_RS24750 - redox-regulated ATPase YchF, at 5,129,731 to 5,130,822 _RS24750 ABID97_RS24755: ABID97_RS24755 - sugar ABC transporter substrate-binding protein, at 5,131,024 to 5,131,980 _RS24755 ABID97_RS24760: ABID97_RS24760 - sugar ABC transporter ATP-binding protein, at 5,132,003 to 5,133,634 _RS24760 Position (kb) 5131 5132Strain fitness (log2 ratio) -1 0 1at 5130.149 kb on + strand, within ABID97_RS24750at 5130.149 kb on + strand, within ABID97_RS24750at 5130.149 kb on + strand, within ABID97_RS24750at 5130.150 kb on - strand, within ABID97_RS24750at 5130.150 kb on - strand, within ABID97_RS24750at 5130.728 kb on + strandat 5130.729 kb on - strandat 5130.923 kb on - strandat 5130.933 kb on - strandat 5130.968 kb on - strandat 5131.041 kb on + strandat 5131.210 kb on + strand, within ABID97_RS24755at 5131.210 kb on + strand, within ABID97_RS24755at 5131.573 kb on + strand, within ABID97_RS24755at 5131.783 kb on + strand, within ABID97_RS24755at 5131.978 kb on + strandat 5131.978 kb on + strandat 5131.979 kb on - strandat 5131.979 kb on - strandat 5132.078 kb on + strandat 5132.079 kb on - strandat 5132.079 kb on - strandat 5132.621 kb on + strand, within ABID97_RS24760at 5132.621 kb on + strand, within ABID97_RS24760at 5132.621 kb on + strand, within ABID97_RS24760at 5132.621 kb on + strand, within ABID97_RS24760at 5132.621 kb on + strand, within ABID97_RS24760at 5132.621 kb on + strand, within ABID97_RS24760at 5132.622 kb on - strand, within ABID97_RS24760

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
remove
5,130,149 + ABID97_RS24750 0.38 -0.3
5,130,149 + ABID97_RS24750 0.38 +0.6
5,130,149 + ABID97_RS24750 0.38 -0.0
5,130,150 - ABID97_RS24750 0.38 -0.9
5,130,150 - ABID97_RS24750 0.38 +1.7
5,130,728 + -1.1
5,130,729 - -1.1
5,130,923 - -0.5
5,130,933 - +0.2
5,130,968 - -0.2
5,131,041 + +0.8
5,131,210 + ABID97_RS24755 0.19 -0.1
5,131,210 + ABID97_RS24755 0.19 +0.6
5,131,573 + ABID97_RS24755 0.57 +1.4
5,131,783 + ABID97_RS24755 0.79 +0.3
5,131,978 + +0.5
5,131,978 + +0.6
5,131,979 - +0.2
5,131,979 - +0.2
5,132,078 + -0.5
5,132,079 - +1.0
5,132,079 - +0.6
5,132,621 + ABID97_RS24760 0.38 -0.1
5,132,621 + ABID97_RS24760 0.38 -0.3
5,132,621 + ABID97_RS24760 0.38 +0.1
5,132,621 + ABID97_RS24760 0.38 +0.4
5,132,621 + ABID97_RS24760 0.38 -1.6
5,132,621 + ABID97_RS24760 0.38 +0.1
5,132,622 - ABID97_RS24760 0.38 -0.1

Or see this region's nucleotide sequence