Strain Fitness in Variovorax sp. OAS795 around ABID97_RS21965

Experiment: 2-Deoxy-D-Ribose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS21960 and ABID97_RS21965 are separated by 0 nucleotidesABID97_RS21965 and ABID97_RS21970 are separated by 37 nucleotides ABID97_RS21960: ABID97_RS21960 - PLP-dependent aminotransferase family protein, at 4,542,591 to 4,544,072 _RS21960 ABID97_RS21965: ABID97_RS21965 - ABC transporter substrate-binding protein, at 4,544,073 to 4,545,053 _RS21965 ABID97_RS21970: ABID97_RS21970 - cytochrome c, at 4,545,091 to 4,546,251 _RS21970 Position (kb) 4544 4545 4546Strain fitness (log2 ratio) -1 0 1at 4543.377 kb on + strand, within ABID97_RS21960at 4543.378 kb on - strand, within ABID97_RS21960at 4544.287 kb on + strand, within ABID97_RS21965at 4544.395 kb on + strand, within ABID97_RS21965at 4544.702 kb on - strand, within ABID97_RS21965at 4545.602 kb on + strand, within ABID97_RS21970at 4545.603 kb on - strand, within ABID97_RS21970at 4545.840 kb on - strand, within ABID97_RS21970

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
remove
4,543,377 + ABID97_RS21960 0.53 -0.8
4,543,378 - ABID97_RS21960 0.53 -1.0
4,544,287 + ABID97_RS21965 0.22 -0.0
4,544,395 + ABID97_RS21965 0.33 +0.3
4,544,702 - ABID97_RS21965 0.64 -0.3
4,545,602 + ABID97_RS21970 0.44 -1.0
4,545,603 - ABID97_RS21970 0.44 +0.1
4,545,840 - ABID97_RS21970 0.65 -1.5

Or see this region's nucleotide sequence