Experiment: 2-Deoxy-D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS20365 and ABID97_RS20370 are separated by 4 nucleotides ABID97_RS20370 and ABID97_RS20375 are separated by 125 nucleotides
ABID97_RS20365: ABID97_RS20365 - branched-chain amino acid ABC transporter permease, at 4,203,719 to 4,204,708
_RS20365
ABID97_RS20370: ABID97_RS20370 - branched-chain amino acid ABC transporter permease, at 4,204,713 to 4,205,588
_RS20370
ABID97_RS20375: ABID97_RS20375 - ABC transporter substrate-binding protein, at 4,205,714 to 4,206,910
_RS20375
Position (kb) 4204
4205
4206 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4204.239 kb on + strand, within ABID97_RS20365 at 4204.239 kb on + strand, within ABID97_RS20365 at 4204.240 kb on - strand, within ABID97_RS20365 at 4204.240 kb on - strand, within ABID97_RS20365 at 4204.243 kb on - strand at 4204.350 kb on + strand, within ABID97_RS20365 at 4204.389 kb on + strand, within ABID97_RS20365 at 4204.390 kb on - strand, within ABID97_RS20365 at 4204.390 kb on - strand, within ABID97_RS20365 at 4204.935 kb on + strand, within ABID97_RS20370 at 4205.105 kb on - strand, within ABID97_RS20370 at 4205.155 kb on + strand, within ABID97_RS20370 at 4205.215 kb on + strand, within ABID97_RS20370 at 4205.396 kb on - strand, within ABID97_RS20370 at 4205.411 kb on - strand, within ABID97_RS20370 at 4205.890 kb on - strand, within ABID97_RS20375 at 4206.039 kb on + strand, within ABID97_RS20375 at 4206.393 kb on + strand, within ABID97_RS20375 at 4206.393 kb on + strand, within ABID97_RS20375
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C) remove 4,204,239 + ABID97_RS20365 0.53 -0.1 4,204,239 + ABID97_RS20365 0.53 -0.1 4,204,240 - ABID97_RS20365 0.53 -0.8 4,204,240 - ABID97_RS20365 0.53 -0.2 4,204,243 - +1.5 4,204,350 + ABID97_RS20365 0.64 -0.1 4,204,389 + ABID97_RS20365 0.68 -0.6 4,204,390 - ABID97_RS20365 0.68 +2.8 4,204,390 - ABID97_RS20365 0.68 +0.1 4,204,935 + ABID97_RS20370 0.25 -1.1 4,205,105 - ABID97_RS20370 0.45 -0.5 4,205,155 + ABID97_RS20370 0.50 -0.6 4,205,215 + ABID97_RS20370 0.57 -0.1 4,205,396 - ABID97_RS20370 0.78 -0.6 4,205,411 - ABID97_RS20370 0.80 -0.4 4,205,890 - ABID97_RS20375 0.15 -0.7 4,206,039 + ABID97_RS20375 0.27 -2.8 4,206,393 + ABID97_RS20375 0.57 -1.1 4,206,393 + ABID97_RS20375 0.57 +0.9
Or see this region's nucleotide sequence