Strain Fitness in Variovorax sp. OAS795 around ABID97_RS17945

Experiment: 2-Deoxy-D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS17935 and ABID97_RS17940 are separated by 46 nucleotidesABID97_RS17940 and ABID97_RS17945 overlap by 4 nucleotidesABID97_RS17945 and ABID97_RS17950 are separated by 6 nucleotidesABID97_RS17950 and ABID97_RS17955 overlap by 4 nucleotides ABID97_RS17935: ABID97_RS17935 - bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD, at 3,706,937 to 3,708,064 _RS17935 ABID97_RS17940: ABID97_RS17940 - riboflavin synthase, at 3,708,111 to 3,708,809 _RS17940 ABID97_RS17945: ABID97_RS17945 - bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II, at 3,708,806 to 3,709,960 _RS17945 ABID97_RS17950: ABID97_RS17950 - 6,7-dimethyl-8-ribityllumazine synthase, at 3,709,967 to 3,710,434 _RS17950 ABID97_RS17955: ABID97_RS17955 - transcription antitermination factor NusB, at 3,710,431 to 3,710,967 _RS17955 Position (kb) 3708 3709 3710Strain fitness (log2 ratio) -1 0 1at 3708.062 kb on + strandat 3708.063 kb on - strandat 3709.829 kb on + strand, within ABID97_RS17945at 3709.922 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
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3,708,062 + +0.3
3,708,063 - -0.3
3,709,829 + ABID97_RS17945 0.89 +0.6
3,709,922 + +0.2

Or see this region's nucleotide sequence