Strain Fitness in Variovorax sp. OAS795 around ABID97_RS17855

Experiment: 2-Deoxy-D-Ribose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS17845 and ABID97_RS17850 are separated by 192 nucleotidesABID97_RS17850 and ABID97_RS17855 are separated by 136 nucleotidesABID97_RS17855 and ABID97_RS17860 are separated by 30 nucleotidesABID97_RS17860 and ABID97_RS17865 are separated by 16 nucleotides ABID97_RS17845: ABID97_RS17845 - cysteine--tRNA ligase, at 3,684,345 to 3,685,721 _RS17845 ABID97_RS17850: ABID97_RS17850 - tetratricopeptide repeat protein, at 3,685,914 to 3,686,504 _RS17850 ABID97_RS17855: ABID97_RS17855 - peptidylprolyl isomerase, at 3,686,641 to 3,687,186 _RS17855 ABID97_RS17860: ABID97_RS17860 - peptidylprolyl isomerase, at 3,687,217 to 3,687,729 _RS17860 ABID97_RS17865: ABID97_RS17865 - UDP-2,3-diacylglucosamine diphosphatase, at 3,687,746 to 3,688,528 _RS17865 Position (kb) 3686 3687 3688Strain fitness (log2 ratio) -2 -1 0 1 2at 3685.775 kb on - strandat 3685.775 kb on - strandat 3685.845 kb on + strandat 3685.846 kb on - strandat 3685.846 kb on - strandat 3686.346 kb on + strand, within ABID97_RS17850at 3686.346 kb on + strand, within ABID97_RS17850at 3686.502 kb on + strandat 3686.503 kb on - strandat 3686.785 kb on + strand, within ABID97_RS17855at 3686.804 kb on - strand, within ABID97_RS17855at 3686.939 kb on - strand, within ABID97_RS17855at 3687.044 kb on - strand, within ABID97_RS17855at 3687.050 kb on - strand, within ABID97_RS17855at 3687.184 kb on + strandat 3687.253 kb on + strandat 3687.319 kb on + strand, within ABID97_RS17860at 3687.319 kb on + strand, within ABID97_RS17860at 3687.319 kb on + strand, within ABID97_RS17860at 3687.319 kb on + strand, within ABID97_RS17860at 3687.319 kb on + strand, within ABID97_RS17860at 3687.472 kb on + strand, within ABID97_RS17860

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
remove
3,685,775 - -0.4
3,685,775 - -1.0
3,685,845 + -0.1
3,685,846 - +1.1
3,685,846 - +0.7
3,686,346 + ABID97_RS17850 0.73 -2.7
3,686,346 + ABID97_RS17850 0.73 -0.1
3,686,502 + +2.4
3,686,503 - +0.0
3,686,785 + ABID97_RS17855 0.26 +0.2
3,686,804 - ABID97_RS17855 0.30 +0.7
3,686,939 - ABID97_RS17855 0.55 -0.6
3,687,044 - ABID97_RS17855 0.74 +0.3
3,687,050 - ABID97_RS17855 0.75 +0.1
3,687,184 + -0.9
3,687,253 + +1.1
3,687,319 + ABID97_RS17860 0.20 +0.2
3,687,319 + ABID97_RS17860 0.20 +0.7
3,687,319 + ABID97_RS17860 0.20 +0.9
3,687,319 + ABID97_RS17860 0.20 -0.1
3,687,319 + ABID97_RS17860 0.20 +1.1
3,687,472 + ABID97_RS17860 0.50 +2.0

Or see this region's nucleotide sequence