Strain Fitness in Variovorax sp. OAS795 around ABID97_RS16665

Experiment: 2-Deoxy-D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS16655 and ABID97_RS16660 are separated by 23 nucleotidesABID97_RS16660 and ABID97_RS16665 are separated by 234 nucleotidesABID97_RS16665 and ABID97_RS16670 are separated by 276 nucleotides ABID97_RS16655: ABID97_RS16655 - ATP-binding cassette domain-containing protein, at 3,446,962 to 3,449,001 _RS16655 ABID97_RS16660: ABID97_RS16660 - hypothetical protein, at 3,449,025 to 3,449,528 _RS16660 ABID97_RS16665: ABID97_RS16665 - S24 family peptidase, at 3,449,763 to 3,450,479 _RS16665 ABID97_RS16670: ABID97_RS16670 - acyltransferase, at 3,450,756 to 3,451,877 _RS16670 Position (kb) 3449 3450 3451Strain fitness (log2 ratio) -2 -1 0 1 2at 3449.385 kb on + strand, within ABID97_RS16660at 3449.385 kb on + strand, within ABID97_RS16660at 3449.385 kb on + strand, within ABID97_RS16660at 3449.385 kb on + strand, within ABID97_RS16660at 3449.385 kb on + strand, within ABID97_RS16660at 3449.386 kb on - strand, within ABID97_RS16660at 3449.386 kb on - strand, within ABID97_RS16660at 3449.386 kb on - strand, within ABID97_RS16660at 3449.386 kb on - strand, within ABID97_RS16660at 3449.627 kb on + strandat 3449.772 kb on - strandat 3450.027 kb on + strand, within ABID97_RS16665at 3450.027 kb on + strand, within ABID97_RS16665at 3450.027 kb on + strand, within ABID97_RS16665at 3450.028 kb on - strand, within ABID97_RS16665at 3450.028 kb on - strand, within ABID97_RS16665at 3450.198 kb on + strand, within ABID97_RS16665at 3450.198 kb on + strand, within ABID97_RS16665at 3450.199 kb on - strand, within ABID97_RS16665at 3450.199 kb on - strand, within ABID97_RS16665at 3450.199 kb on - strand, within ABID97_RS16665at 3450.243 kb on + strand, within ABID97_RS16665at 3450.243 kb on + strand, within ABID97_RS16665at 3450.243 kb on + strand, within ABID97_RS16665at 3450.255 kb on + strand, within ABID97_RS16665at 3450.255 kb on + strand, within ABID97_RS16665at 3450.255 kb on + strand, within ABID97_RS16665at 3450.518 kb on - strandat 3450.518 kb on - strandat 3450.518 kb on - strandat 3450.728 kb on + strandat 3450.729 kb on - strandat 3450.762 kb on + strandat 3450.762 kb on + strandat 3450.763 kb on - strandat 3450.849 kb on + strandat 3450.849 kb on + strandat 3450.849 kb on + strandat 3450.849 kb on + strandat 3450.849 kb on + strandat 3450.849 kb on + strandat 3450.850 kb on - strandat 3450.850 kb on - strandat 3450.850 kb on - strandat 3450.850 kb on - strandat 3450.850 kb on - strandat 3450.850 kb on - strandat 3450.850 kb on - strandat 3450.850 kb on - strandat 3450.891 kb on + strand, within ABID97_RS16670at 3450.891 kb on + strand, within ABID97_RS16670at 3450.891 kb on + strand, within ABID97_RS16670at 3450.891 kb on + strand, within ABID97_RS16670at 3450.892 kb on - strand, within ABID97_RS16670at 3450.903 kb on + strand, within ABID97_RS16670at 3451.101 kb on + strand, within ABID97_RS16670at 3451.158 kb on + strand, within ABID97_RS16670at 3451.158 kb on + strand, within ABID97_RS16670at 3451.158 kb on + strand, within ABID97_RS16670at 3451.158 kb on + strand, within ABID97_RS16670at 3451.158 kb on + strand, within ABID97_RS16670at 3451.159 kb on - strand, within ABID97_RS16670at 3451.159 kb on - strand, within ABID97_RS16670at 3451.159 kb on - strand, within ABID97_RS16670at 3451.170 kb on + strand, within ABID97_RS16670at 3451.171 kb on - strand, within ABID97_RS16670at 3451.171 kb on - strand, within ABID97_RS16670at 3451.245 kb on + strand, within ABID97_RS16670at 3451.245 kb on + strand, within ABID97_RS16670at 3451.245 kb on + strand, within ABID97_RS16670at 3451.245 kb on + strand, within ABID97_RS16670at 3451.245 kb on + strand, within ABID97_RS16670at 3451.245 kb on + strand, within ABID97_RS16670at 3451.246 kb on - strand, within ABID97_RS16670at 3451.246 kb on - strand, within ABID97_RS16670at 3451.246 kb on - strand, within ABID97_RS16670at 3451.246 kb on - strand, within ABID97_RS16670at 3451.246 kb on - strand, within ABID97_RS16670at 3451.246 kb on - strand, within ABID97_RS16670at 3451.246 kb on - strand, within ABID97_RS16670at 3451.247 kb on + strand, within ABID97_RS16670at 3451.247 kb on + strand, within ABID97_RS16670at 3451.247 kb on + strand, within ABID97_RS16670at 3451.248 kb on - strand, within ABID97_RS16670at 3451.248 kb on - strand, within ABID97_RS16670at 3451.248 kb on - strand, within ABID97_RS16670at 3451.374 kb on + strand, within ABID97_RS16670

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
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3,449,385 + ABID97_RS16660 0.71 -0.3
3,449,385 + ABID97_RS16660 0.71 -0.1
3,449,385 + ABID97_RS16660 0.71 -0.2
3,449,385 + ABID97_RS16660 0.71 +0.0
3,449,385 + ABID97_RS16660 0.71 -0.0
3,449,386 - ABID97_RS16660 0.72 -0.4
3,449,386 - ABID97_RS16660 0.72 -0.3
3,449,386 - ABID97_RS16660 0.72 -0.6
3,449,386 - ABID97_RS16660 0.72 -0.3
3,449,627 + +0.1
3,449,772 - +0.7
3,450,027 + ABID97_RS16665 0.37 +0.7
3,450,027 + ABID97_RS16665 0.37 +0.4
3,450,027 + ABID97_RS16665 0.37 +0.3
3,450,028 - ABID97_RS16665 0.37 +0.2
3,450,028 - ABID97_RS16665 0.37 +0.4
3,450,198 + ABID97_RS16665 0.61 +1.0
3,450,198 + ABID97_RS16665 0.61 +0.4
3,450,199 - ABID97_RS16665 0.61 +0.9
3,450,199 - ABID97_RS16665 0.61 +0.6
3,450,199 - ABID97_RS16665 0.61 +1.1
3,450,243 + ABID97_RS16665 0.67 +0.3
3,450,243 + ABID97_RS16665 0.67 +0.1
3,450,243 + ABID97_RS16665 0.67 +0.1
3,450,255 + ABID97_RS16665 0.69 +1.1
3,450,255 + ABID97_RS16665 0.69 +0.3
3,450,255 + ABID97_RS16665 0.69 +0.8
3,450,518 - +0.1
3,450,518 - -0.9
3,450,518 - -0.4
3,450,728 + +0.0
3,450,729 - +0.1
3,450,762 + -1.1
3,450,762 + +0.4
3,450,763 - -0.1
3,450,849 + -0.9
3,450,849 + +0.1
3,450,849 + +0.6
3,450,849 + +0.4
3,450,849 + -0.1
3,450,849 + +0.1
3,450,850 - +0.6
3,450,850 - +0.2
3,450,850 - +0.0
3,450,850 - -0.1
3,450,850 - +0.0
3,450,850 - -0.3
3,450,850 - +0.0
3,450,850 - +0.1
3,450,891 + ABID97_RS16670 0.12 -1.2
3,450,891 + ABID97_RS16670 0.12 -0.1
3,450,891 + ABID97_RS16670 0.12 +0.2
3,450,891 + ABID97_RS16670 0.12 -0.1
3,450,892 - ABID97_RS16670 0.12 +0.7
3,450,903 + ABID97_RS16670 0.13 +0.6
3,451,101 + ABID97_RS16670 0.31 -0.4
3,451,158 + ABID97_RS16670 0.36 +0.1
3,451,158 + ABID97_RS16670 0.36 -0.0
3,451,158 + ABID97_RS16670 0.36 +0.2
3,451,158 + ABID97_RS16670 0.36 +0.1
3,451,158 + ABID97_RS16670 0.36 -0.4
3,451,159 - ABID97_RS16670 0.36 -0.4
3,451,159 - ABID97_RS16670 0.36 +0.9
3,451,159 - ABID97_RS16670 0.36 -0.4
3,451,170 + ABID97_RS16670 0.37 -1.4
3,451,171 - ABID97_RS16670 0.37 -0.3
3,451,171 - ABID97_RS16670 0.37 +0.1
3,451,245 + ABID97_RS16670 0.44 -0.7
3,451,245 + ABID97_RS16670 0.44 -1.1
3,451,245 + ABID97_RS16670 0.44 +0.1
3,451,245 + ABID97_RS16670 0.44 -0.4
3,451,245 + ABID97_RS16670 0.44 -0.0
3,451,245 + ABID97_RS16670 0.44 -0.4
3,451,246 - ABID97_RS16670 0.44 +0.3
3,451,246 - ABID97_RS16670 0.44 +0.2
3,451,246 - ABID97_RS16670 0.44 +0.1
3,451,246 - ABID97_RS16670 0.44 -1.4
3,451,246 - ABID97_RS16670 0.44 -0.5
3,451,246 - ABID97_RS16670 0.44 +0.1
3,451,246 - ABID97_RS16670 0.44 -0.2
3,451,247 + ABID97_RS16670 0.44 -0.9
3,451,247 + ABID97_RS16670 0.44 +2.4
3,451,247 + ABID97_RS16670 0.44 +0.1
3,451,248 - ABID97_RS16670 0.44 +0.2
3,451,248 - ABID97_RS16670 0.44 -1.3
3,451,248 - ABID97_RS16670 0.44 +0.4
3,451,374 + ABID97_RS16670 0.55 -1.8

Or see this region's nucleotide sequence