Strain Fitness in Variovorax sp. OAS795 around ABID97_RS14310

Experiment: 2-Deoxy-D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS14300 and ABID97_RS14305 are separated by 79 nucleotidesABID97_RS14305 and ABID97_RS14310 overlap by 2 nucleotidesABID97_RS14310 and ABID97_RS14315 overlap by 4 nucleotides ABID97_RS14300: ABID97_RS14300 - hypothetical protein, at 2,973,998 to 2,974,201 _RS14300 ABID97_RS14305: ABID97_RS14305 - arylesterase, at 2,974,281 to 2,974,961 _RS14305 ABID97_RS14310: ABID97_RS14310 - ATP-binding cassette domain-containing protein, at 2,974,960 to 2,975,682 _RS14310 ABID97_RS14315: ABID97_RS14315 - hypothetical protein, at 2,975,679 to 2,976,659 _RS14315 Position (kb) 2974 2975 2976Strain fitness (log2 ratio) -3 -2 -1 0 1at 2974.013 kb on + strandat 2974.013 kb on + strandat 2974.186 kb on + strandat 2974.187 kb on - strandat 2974.486 kb on + strand, within ABID97_RS14305at 2974.498 kb on + strand, within ABID97_RS14305at 2974.925 kb on + strandat 2974.925 kb on + strandat 2974.925 kb on + strandat 2974.926 kb on - strandat 2975.874 kb on + strand, within ABID97_RS14315at 2975.874 kb on + strand, within ABID97_RS14315at 2975.875 kb on - strand, within ABID97_RS14315at 2975.875 kb on - strand, within ABID97_RS14315at 2976.363 kb on + strand, within ABID97_RS14315at 2976.363 kb on + strand, within ABID97_RS14315at 2976.364 kb on - strand, within ABID97_RS14315at 2976.364 kb on - strand, within ABID97_RS14315at 2976.552 kb on + strand, within ABID97_RS14315at 2976.552 kb on + strand, within ABID97_RS14315

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
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2,974,013 + -0.6
2,974,013 + -0.7
2,974,186 + -1.1
2,974,187 - -0.8
2,974,486 + ABID97_RS14305 0.30 -0.1
2,974,498 + ABID97_RS14305 0.32 +1.4
2,974,925 + -0.4
2,974,925 + -0.4
2,974,925 + +0.7
2,974,926 - +0.3
2,975,874 + ABID97_RS14315 0.20 -1.1
2,975,874 + ABID97_RS14315 0.20 +0.9
2,975,875 - ABID97_RS14315 0.20 -1.3
2,975,875 - ABID97_RS14315 0.20 +0.2
2,976,363 + ABID97_RS14315 0.70 +0.2
2,976,363 + ABID97_RS14315 0.70 +0.6
2,976,364 - ABID97_RS14315 0.70 +0.4
2,976,364 - ABID97_RS14315 0.70 +0.7
2,976,552 + ABID97_RS14315 0.89 -0.1
2,976,552 + ABID97_RS14315 0.89 -2.8

Or see this region's nucleotide sequence