Experiment: 2-Deoxy-D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS03975 and ABID97_RS03980 are separated by 117 nucleotides ABID97_RS03980 and ABID97_RS03985 are separated by 179 nucleotides
ABID97_RS03975: ABID97_RS03975 - MBL fold metallo-hydrolase, at 815,656 to 816,615
_RS03975
ABID97_RS03980: ABID97_RS03980 - IclR family transcriptional regulator, at 816,733 to 817,626
_RS03980
ABID97_RS03985: ABID97_RS03985 - hypothetical protein, at 817,806 to 818,870
_RS03985
Position (kb) 816
817
818 Strain fitness (log2 ratio) -2
-1
0
1 at 815.738 kb on + strand at 815.793 kb on - strand, within ABID97_RS03975 at 815.826 kb on - strand, within ABID97_RS03975 at 815.876 kb on + strand, within ABID97_RS03975 at 815.877 kb on - strand, within ABID97_RS03975 at 816.020 kb on + strand, within ABID97_RS03975 at 816.020 kb on + strand, within ABID97_RS03975 at 816.339 kb on - strand, within ABID97_RS03975 at 816.390 kb on - strand, within ABID97_RS03975 at 816.390 kb on - strand, within ABID97_RS03975 at 816.525 kb on + strand at 816.525 kb on + strand at 816.526 kb on - strand at 816.526 kb on - strand at 816.527 kb on + strand at 816.527 kb on + strand at 816.527 kb on + strand at 816.528 kb on - strand at 816.528 kb on - strand at 816.528 kb on - strand at 816.697 kb on + strand at 816.698 kb on - strand at 816.714 kb on - strand at 816.720 kb on + strand at 816.720 kb on + strand at 816.919 kb on + strand, within ABID97_RS03980 at 816.919 kb on + strand, within ABID97_RS03980 at 816.919 kb on + strand, within ABID97_RS03980 at 816.919 kb on + strand, within ABID97_RS03980 at 816.919 kb on + strand, within ABID97_RS03980 at 816.919 kb on + strand, within ABID97_RS03980 at 816.919 kb on + strand, within ABID97_RS03980 at 816.919 kb on + strand, within ABID97_RS03980 at 816.920 kb on - strand, within ABID97_RS03980 at 816.920 kb on - strand, within ABID97_RS03980 at 816.920 kb on - strand, within ABID97_RS03980 at 816.920 kb on - strand, within ABID97_RS03980 at 816.977 kb on - strand, within ABID97_RS03980 at 817.228 kb on + strand, within ABID97_RS03980 at 817.229 kb on - strand, within ABID97_RS03980 at 817.229 kb on - strand, within ABID97_RS03980 at 817.229 kb on - strand, within ABID97_RS03980 at 818.131 kb on - strand, within ABID97_RS03985 at 818.473 kb on + strand, within ABID97_RS03985
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C) remove 815,738 + +0.1 815,793 - ABID97_RS03975 0.14 +0.4 815,826 - ABID97_RS03975 0.18 +0.2 815,876 + ABID97_RS03975 0.23 +0.1 815,877 - ABID97_RS03975 0.23 +0.2 816,020 + ABID97_RS03975 0.38 -0.3 816,020 + ABID97_RS03975 0.38 -0.5 816,339 - ABID97_RS03975 0.71 +0.1 816,390 - ABID97_RS03975 0.76 +0.8 816,390 - ABID97_RS03975 0.76 -0.3 816,525 + -1.0 816,525 + +0.2 816,526 - -0.0 816,526 - +1.5 816,527 + +0.6 816,527 + +0.1 816,527 + +0.4 816,528 - -1.5 816,528 - -0.0 816,528 - -0.3 816,697 + -0.1 816,698 - +0.1 816,714 - +0.1 816,720 + -0.0 816,720 + -0.1 816,919 + ABID97_RS03980 0.21 -0.2 816,919 + ABID97_RS03980 0.21 -0.9 816,919 + ABID97_RS03980 0.21 -0.3 816,919 + ABID97_RS03980 0.21 -1.4 816,919 + ABID97_RS03980 0.21 -0.7 816,919 + ABID97_RS03980 0.21 -0.8 816,919 + ABID97_RS03980 0.21 -1.0 816,919 + ABID97_RS03980 0.21 -0.8 816,920 - ABID97_RS03980 0.21 -0.6 816,920 - ABID97_RS03980 0.21 -0.5 816,920 - ABID97_RS03980 0.21 -1.8 816,920 - ABID97_RS03980 0.21 -1.2 816,977 - ABID97_RS03980 0.27 -0.8 817,228 + ABID97_RS03980 0.55 -0.2 817,229 - ABID97_RS03980 0.55 +0.2 817,229 - ABID97_RS03980 0.55 -1.0 817,229 - ABID97_RS03980 0.55 -2.2 818,131 - ABID97_RS03985 0.31 -0.0 818,473 + ABID97_RS03985 0.63 -0.8
Or see this region's nucleotide sequence