Strain Fitness in Variovorax sp. OAS795 around ABID97_RS03945

Experiment: 2-Deoxy-D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS03940 and ABID97_RS03945 overlap by 4 nucleotidesABID97_RS03945 and ABID97_RS03950 are separated by 65 nucleotides ABID97_RS03940: ABID97_RS03940 - rod shape-determining protein MreC, at 807,458 to 808,420 _RS03940 ABID97_RS03945: ABID97_RS03945 - rod shape-determining protein MreD, at 808,417 to 808,938 _RS03945 ABID97_RS03950: ABID97_RS03950 - penicillin-binding protein 2, at 809,004 to 810,971 _RS03950 Position (kb) 808 809Strain fitness (log2 ratio) -1 0 1 2at 808.935 kb on - strandat 808.935 kb on - strandat 808.935 kb on - strandat 808.937 kb on - strandat 808.989 kb on + strandat 808.989 kb on + strandat 808.989 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
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808,935 - +1.6
808,935 - +2.0
808,935 - +1.0
808,937 - -0.2
808,989 + +0.3
808,989 + -0.3
808,989 + -0.8

Or see this region's nucleotide sequence