Experiment: 2-Deoxy-D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS00360 and ABID97_RS00365 are separated by 12 nucleotides ABID97_RS00365 and ABID97_RS00370 are separated by 2 nucleotides ABID97_RS00370 and ABID97_RS00375 are separated by 37 nucleotides ABID97_RS00375 and ABID97_RS00380 are separated by 77 nucleotides
ABID97_RS00360: ABID97_RS00360 - LemA family protein, at 81,006 to 81,608
_RS00360
ABID97_RS00365: ABID97_RS00365 - TPM domain-containing protein, at 81,621 to 82,550
_RS00365
ABID97_RS00370: ABID97_RS00370 - TPM domain-containing protein, at 82,553 to 83,071
_RS00370
ABID97_RS00375: ABID97_RS00375 - ligase-associated DNA damage response endonuclease PdeM, at 83,109 to 83,795
_RS00375
ABID97_RS00380: ABID97_RS00380 - thioredoxin TrxC, at 83,873 to 84,322
_RS00380
Position (kb) 82
83
84 Strain fitness (log2 ratio) -1
0
1 at 82.548 kb on + strand at 82.549 kb on - strand at 82.549 kb on - strand at 82.734 kb on - strand, within ABID97_RS00370 at 82.734 kb on - strand, within ABID97_RS00370 at 82.829 kb on + strand, within ABID97_RS00370 at 82.829 kb on + strand, within ABID97_RS00370 at 82.829 kb on + strand, within ABID97_RS00370 at 82.830 kb on - strand, within ABID97_RS00370 at 82.830 kb on - strand, within ABID97_RS00370 at 82.830 kb on - strand, within ABID97_RS00370 at 83.133 kb on + strand at 83.133 kb on + strand at 83.134 kb on - strand at 83.134 kb on - strand at 83.134 kb on - strand at 83.155 kb on + strand at 83.155 kb on + strand at 83.156 kb on - strand at 83.647 kb on + strand, within ABID97_RS00375 at 83.648 kb on - strand, within ABID97_RS00375 at 83.648 kb on - strand, within ABID97_RS00375
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C) remove 82,548 + -0.1 82,549 - +0.9 82,549 - +0.3 82,734 - ABID97_RS00370 0.35 +0.2 82,734 - ABID97_RS00370 0.35 -0.0 82,829 + ABID97_RS00370 0.53 +0.2 82,829 + ABID97_RS00370 0.53 +1.1 82,829 + ABID97_RS00370 0.53 -0.2 82,830 - ABID97_RS00370 0.53 +0.0 82,830 - ABID97_RS00370 0.53 +0.5 82,830 - ABID97_RS00370 0.53 -0.1 83,133 + -0.0 83,133 + +0.2 83,134 - -0.1 83,134 - -0.4 83,134 - +0.1 83,155 + -1.7 83,155 + +0.8 83,156 - +0.1 83,647 + ABID97_RS00375 0.78 +0.3 83,648 - ABID97_RS00375 0.78 +0.3 83,648 - ABID97_RS00375 0.78 -0.2
Or see this region's nucleotide sequence