Experiment: 2-Deoxy-D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS00045 and ABID97_RS00050 are separated by 23 nucleotides ABID97_RS00050 and ABID97_RS00055 overlap by 4 nucleotides ABID97_RS00055 and ABID97_RS00060 are separated by 108 nucleotides ABID97_RS00060 and ABID97_RS00065 are separated by 13 nucleotides
ABID97_RS00045: ABID97_RS00045 - tripartite tricarboxylate transporter substrate binding protein, at 10,616 to 11,590
_RS00045
ABID97_RS00050: ABID97_RS00050 - hypothetical protein, at 11,614 to 11,826
_RS00050
ABID97_RS00055: ABID97_RS00055 - FAD-dependent monooxygenase, at 11,823 to 13,613
_RS00055
ABID97_RS00060: ABID97_RS00060 - LuxR C-terminal-related transcriptional regulator, at 13,722 to 14,483
_RS00060
ABID97_RS00065: ABID97_RS00065 - M48 family metalloprotease, at 14,497 to 15,261
_RS00065
Position (kb) 11
12
13
14 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 10.853 kb on - strand, within ABID97_RS00045 at 10.853 kb on - strand, within ABID97_RS00045 at 11.124 kb on + strand, within ABID97_RS00045 at 11.124 kb on + strand, within ABID97_RS00045 at 11.125 kb on - strand, within ABID97_RS00045 at 11.125 kb on - strand, within ABID97_RS00045 at 11.125 kb on - strand, within ABID97_RS00045 at 11.155 kb on - strand, within ABID97_RS00045 at 11.155 kb on - strand, within ABID97_RS00045 at 11.155 kb on - strand, within ABID97_RS00045 at 11.155 kb on - strand, within ABID97_RS00045 at 11.238 kb on + strand, within ABID97_RS00045 at 11.238 kb on + strand, within ABID97_RS00045 at 11.238 kb on + strand, within ABID97_RS00045 at 11.238 kb on + strand, within ABID97_RS00045 at 11.238 kb on + strand, within ABID97_RS00045 at 11.238 kb on + strand, within ABID97_RS00045 at 11.238 kb on + strand, within ABID97_RS00045 at 11.238 kb on + strand, within ABID97_RS00045 at 11.238 kb on + strand, within ABID97_RS00045 at 11.238 kb on + strand, within ABID97_RS00045 at 11.239 kb on - strand, within ABID97_RS00045 at 11.239 kb on - strand, within ABID97_RS00045 at 11.239 kb on - strand, within ABID97_RS00045 at 11.239 kb on - strand, within ABID97_RS00045 at 11.326 kb on + strand, within ABID97_RS00045 at 11.326 kb on + strand, within ABID97_RS00045 at 11.326 kb on + strand, within ABID97_RS00045 at 11.326 kb on + strand, within ABID97_RS00045 at 11.327 kb on - strand, within ABID97_RS00045 at 11.327 kb on - strand, within ABID97_RS00045 at 11.328 kb on + strand, within ABID97_RS00045 at 11.511 kb on + strand at 11.512 kb on - strand at 11.512 kb on - strand at 11.512 kb on - strand at 11.611 kb on + strand at 11.612 kb on - strand at 11.786 kb on + strand, within ABID97_RS00050 at 11.787 kb on - strand, within ABID97_RS00050 at 12.242 kb on - strand, within ABID97_RS00055 at 12.365 kb on + strand, within ABID97_RS00055 at 12.422 kb on - strand, within ABID97_RS00055 at 12.580 kb on + strand, within ABID97_RS00055 at 12.580 kb on + strand, within ABID97_RS00055 at 12.581 kb on - strand, within ABID97_RS00055 at 12.739 kb on + strand, within ABID97_RS00055 at 12.739 kb on + strand, within ABID97_RS00055 at 12.740 kb on - strand, within ABID97_RS00055 at 12.868 kb on + strand, within ABID97_RS00055 at 12.868 kb on + strand, within ABID97_RS00055 at 12.880 kb on + strand, within ABID97_RS00055 at 12.880 kb on + strand, within ABID97_RS00055 at 13.108 kb on + strand, within ABID97_RS00055 at 13.108 kb on + strand, within ABID97_RS00055 at 13.109 kb on - strand, within ABID97_RS00055 at 13.109 kb on - strand, within ABID97_RS00055 at 13.109 kb on - strand, within ABID97_RS00055 at 13.120 kb on + strand, within ABID97_RS00055 at 13.120 kb on + strand, within ABID97_RS00055 at 13.121 kb on - strand, within ABID97_RS00055 at 13.121 kb on - strand, within ABID97_RS00055 at 13.121 kb on - strand, within ABID97_RS00055 at 13.121 kb on - strand, within ABID97_RS00055 at 13.121 kb on - strand, within ABID97_RS00055 at 13.121 kb on - strand, within ABID97_RS00055 at 13.123 kb on + strand, within ABID97_RS00055 at 13.124 kb on - strand, within ABID97_RS00055 at 13.204 kb on + strand, within ABID97_RS00055 at 13.205 kb on - strand, within ABID97_RS00055 at 13.205 kb on - strand, within ABID97_RS00055 at 13.205 kb on - strand, within ABID97_RS00055 at 13.477 kb on + strand at 13.478 kb on - strand at 13.486 kb on + strand at 13.486 kb on + strand at 13.487 kb on - strand at 13.654 kb on + strand at 13.655 kb on - strand at 13.669 kb on + strand at 13.673 kb on + strand at 13.896 kb on + strand, within ABID97_RS00060 at 13.929 kb on + strand, within ABID97_RS00060 at 13.930 kb on - strand, within ABID97_RS00060 at 13.930 kb on - strand, within ABID97_RS00060 at 14.067 kb on + strand, within ABID97_RS00060 at 14.067 kb on + strand, within ABID97_RS00060 at 14.067 kb on + strand, within ABID97_RS00060 at 14.068 kb on - strand, within ABID97_RS00060 at 14.434 kb on + strand at 14.434 kb on + strand at 14.434 kb on + strand at 14.434 kb on + strand at 14.435 kb on - strand at 14.435 kb on - strand at 14.435 kb on - strand at 14.438 kb on + strand at 14.438 kb on + strand at 14.438 kb on + strand at 14.438 kb on + strand at 14.438 kb on + strand at 14.439 kb on - strand at 14.439 kb on - strand at 14.439 kb on - strand at 14.439 kb on - strand at 14.481 kb on + strand at 14.482 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C) remove 10,853 - ABID97_RS00045 0.24 -0.5 10,853 - ABID97_RS00045 0.24 +0.1 11,124 + ABID97_RS00045 0.52 +0.2 11,124 + ABID97_RS00045 0.52 -0.4 11,125 - ABID97_RS00045 0.52 +0.2 11,125 - ABID97_RS00045 0.52 -0.2 11,125 - ABID97_RS00045 0.52 -0.6 11,155 - ABID97_RS00045 0.55 -0.1 11,155 - ABID97_RS00045 0.55 -0.2 11,155 - ABID97_RS00045 0.55 +0.6 11,155 - ABID97_RS00045 0.55 -0.3 11,238 + ABID97_RS00045 0.64 -0.0 11,238 + ABID97_RS00045 0.64 +0.3 11,238 + ABID97_RS00045 0.64 -0.3 11,238 + ABID97_RS00045 0.64 -0.3 11,238 + ABID97_RS00045 0.64 +2.1 11,238 + ABID97_RS00045 0.64 +0.2 11,238 + ABID97_RS00045 0.64 +0.0 11,238 + ABID97_RS00045 0.64 -0.0 11,238 + ABID97_RS00045 0.64 -0.3 11,238 + ABID97_RS00045 0.64 -0.6 11,239 - ABID97_RS00045 0.64 +0.1 11,239 - ABID97_RS00045 0.64 +0.4 11,239 - ABID97_RS00045 0.64 -0.2 11,239 - ABID97_RS00045 0.64 -0.4 11,326 + ABID97_RS00045 0.73 -0.2 11,326 + ABID97_RS00045 0.73 +0.1 11,326 + ABID97_RS00045 0.73 -0.8 11,326 + ABID97_RS00045 0.73 -0.4 11,327 - ABID97_RS00045 0.73 +0.2 11,327 - ABID97_RS00045 0.73 +0.4 11,328 + ABID97_RS00045 0.73 -0.2 11,511 + -0.1 11,512 - +0.2 11,512 - -0.6 11,512 - +0.0 11,611 + +0.3 11,612 - +0.6 11,786 + ABID97_RS00050 0.81 -0.1 11,787 - ABID97_RS00050 0.81 -0.1 12,242 - ABID97_RS00055 0.23 -0.0 12,365 + ABID97_RS00055 0.30 -0.1 12,422 - ABID97_RS00055 0.33 +0.4 12,580 + ABID97_RS00055 0.42 -0.2 12,580 + ABID97_RS00055 0.42 -0.2 12,581 - ABID97_RS00055 0.42 -0.3 12,739 + ABID97_RS00055 0.51 -1.2 12,739 + ABID97_RS00055 0.51 -0.8 12,740 - ABID97_RS00055 0.51 -0.0 12,868 + ABID97_RS00055 0.58 +1.8 12,868 + ABID97_RS00055 0.58 +0.7 12,880 + ABID97_RS00055 0.59 -0.1 12,880 + ABID97_RS00055 0.59 +0.4 13,108 + ABID97_RS00055 0.72 -0.0 13,108 + ABID97_RS00055 0.72 +0.4 13,109 - ABID97_RS00055 0.72 -0.0 13,109 - ABID97_RS00055 0.72 -0.5 13,109 - ABID97_RS00055 0.72 +0.0 13,120 + ABID97_RS00055 0.72 +0.7 13,120 + ABID97_RS00055 0.72 +0.3 13,121 - ABID97_RS00055 0.72 +0.5 13,121 - ABID97_RS00055 0.72 -0.1 13,121 - ABID97_RS00055 0.72 +1.1 13,121 - ABID97_RS00055 0.72 -0.1 13,121 - ABID97_RS00055 0.72 +0.8 13,121 - ABID97_RS00055 0.72 +0.5 13,123 + ABID97_RS00055 0.73 -0.1 13,124 - ABID97_RS00055 0.73 -0.8 13,204 + ABID97_RS00055 0.77 +0.2 13,205 - ABID97_RS00055 0.77 -0.2 13,205 - ABID97_RS00055 0.77 -0.1 13,205 - ABID97_RS00055 0.77 +0.3 13,477 + -0.5 13,478 - +0.1 13,486 + -0.9 13,486 + +0.4 13,487 - +1.1 13,654 + -1.1 13,655 - -0.5 13,669 + -0.0 13,673 + -0.5 13,896 + ABID97_RS00060 0.23 +0.3 13,929 + ABID97_RS00060 0.27 -1.0 13,930 - ABID97_RS00060 0.27 -0.2 13,930 - ABID97_RS00060 0.27 -0.1 14,067 + ABID97_RS00060 0.45 -0.4 14,067 + ABID97_RS00060 0.45 -0.4 14,067 + ABID97_RS00060 0.45 -1.2 14,068 - ABID97_RS00060 0.45 -3.0 14,434 + +0.6 14,434 + -0.3 14,434 + -0.6 14,434 + -0.5 14,435 - -0.1 14,435 - -1.0 14,435 - -0.7 14,438 + +0.3 14,438 + -0.2 14,438 + -0.4 14,438 + -0.1 14,438 + +0.1 14,439 - +0.6 14,439 - +0.0 14,439 - +0.8 14,439 - +0.4 14,481 + -0.1 14,482 - +0.4
Or see this region's nucleotide sequence