Strain Fitness in Serratia liquefaciens MT49 around IAI46_25225

Experiment: Cobalt chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_25220 and IAI46_25225 are separated by 37 nucleotidesIAI46_25225 and IAI46_25230 are separated by 96 nucleotidesIAI46_25230 and IAI46_25235 are separated by 179 nucleotides IAI46_25220: IAI46_25220 - NCS2 family permease, at 5,384,518 to 5,385,855 _25220 IAI46_25225: IAI46_25225 - hypothetical protein, at 5,385,893 to 5,386,942 _25225 IAI46_25230: IAI46_25230 - NAD(P)H-dependent oxidoreductase, at 5,387,039 to 5,387,605 _25230 IAI46_25235: IAI46_25235 - 4'-phosphopantetheinyl transferase superfamily protein, at 5,387,785 to 5,388,510 _25235 Position (kb) 5385 5386 5387Strain fitness (log2 ratio) -2 -1 0 1at 5384.971 kb on - strand, within IAI46_25220at 5385.096 kb on + strand, within IAI46_25220at 5385.096 kb on + strand, within IAI46_25220at 5385.097 kb on - strand, within IAI46_25220at 5385.148 kb on - strand, within IAI46_25220at 5385.193 kb on + strand, within IAI46_25220at 5385.194 kb on - strand, within IAI46_25220at 5385.219 kb on + strand, within IAI46_25220at 5385.219 kb on + strand, within IAI46_25220at 5385.219 kb on + strand, within IAI46_25220at 5385.219 kb on + strand, within IAI46_25220at 5385.268 kb on - strand, within IAI46_25220at 5385.268 kb on - strand, within IAI46_25220at 5385.297 kb on + strand, within IAI46_25220at 5385.298 kb on - strand, within IAI46_25220at 5385.298 kb on - strand, within IAI46_25220at 5385.375 kb on + strand, within IAI46_25220at 5385.375 kb on + strand, within IAI46_25220at 5385.376 kb on - strand, within IAI46_25220at 5385.376 kb on - strand, within IAI46_25220at 5385.376 kb on - strand, within IAI46_25220at 5385.403 kb on + strand, within IAI46_25220at 5385.403 kb on + strand, within IAI46_25220at 5385.403 kb on + strand, within IAI46_25220at 5385.403 kb on + strand, within IAI46_25220at 5385.404 kb on - strand, within IAI46_25220at 5385.404 kb on - strand, within IAI46_25220at 5385.404 kb on - strand, within IAI46_25220at 5385.404 kb on - strand, within IAI46_25220at 5385.404 kb on - strand, within IAI46_25220at 5385.463 kb on + strand, within IAI46_25220at 5385.463 kb on + strand, within IAI46_25220at 5385.463 kb on + strand, within IAI46_25220at 5385.465 kb on + strand, within IAI46_25220at 5385.465 kb on + strand, within IAI46_25220at 5385.583 kb on + strand, within IAI46_25220at 5385.584 kb on - strand, within IAI46_25220at 5385.607 kb on + strand, within IAI46_25220at 5385.607 kb on + strand, within IAI46_25220at 5385.607 kb on + strand, within IAI46_25220at 5385.607 kb on + strand, within IAI46_25220at 5385.607 kb on + strand, within IAI46_25220at 5385.608 kb on - strand, within IAI46_25220at 5385.608 kb on - strand, within IAI46_25220at 5385.608 kb on - strand, within IAI46_25220at 5385.741 kb on + strandat 5385.748 kb on + strandat 5385.842 kb on + strandat 5385.853 kb on + strandat 5385.854 kb on - strandat 5385.888 kb on - strandat 5385.895 kb on - strandat 5385.895 kb on - strandat 5385.938 kb on + strandat 5385.938 kb on + strandat 5385.939 kb on - strandat 5385.939 kb on - strandat 5385.939 kb on - strandat 5386.007 kb on + strand, within IAI46_25225at 5386.008 kb on - strand, within IAI46_25225at 5386.015 kb on + strand, within IAI46_25225at 5386.016 kb on - strand, within IAI46_25225at 5386.016 kb on - strand, within IAI46_25225at 5386.016 kb on - strand, within IAI46_25225at 5386.016 kb on - strand, within IAI46_25225at 5386.080 kb on + strand, within IAI46_25225at 5386.081 kb on - strand, within IAI46_25225at 5386.081 kb on - strand, within IAI46_25225at 5386.083 kb on + strand, within IAI46_25225at 5386.084 kb on - strand, within IAI46_25225at 5386.084 kb on - strand, within IAI46_25225at 5386.103 kb on - strand, within IAI46_25225at 5386.170 kb on + strand, within IAI46_25225at 5386.170 kb on + strand, within IAI46_25225at 5386.170 kb on + strand, within IAI46_25225at 5386.171 kb on - strand, within IAI46_25225at 5386.171 kb on - strand, within IAI46_25225at 5386.172 kb on + strand, within IAI46_25225at 5386.172 kb on + strand, within IAI46_25225at 5386.172 kb on + strand, within IAI46_25225at 5386.172 kb on + strand, within IAI46_25225at 5386.172 kb on + strand, within IAI46_25225at 5386.172 kb on + strand, within IAI46_25225at 5386.172 kb on + strand, within IAI46_25225at 5386.173 kb on - strand, within IAI46_25225at 5386.173 kb on - strand, within IAI46_25225at 5386.173 kb on - strand, within IAI46_25225at 5386.173 kb on - strand, within IAI46_25225at 5386.173 kb on - strand, within IAI46_25225at 5386.173 kb on - strand, within IAI46_25225at 5386.173 kb on - strand, within IAI46_25225at 5386.183 kb on - strand, within IAI46_25225at 5386.236 kb on + strand, within IAI46_25225at 5386.237 kb on - strand, within IAI46_25225at 5386.259 kb on + strand, within IAI46_25225at 5386.317 kb on + strand, within IAI46_25225at 5386.318 kb on - strand, within IAI46_25225at 5386.318 kb on - strand, within IAI46_25225at 5386.374 kb on + strand, within IAI46_25225at 5386.374 kb on + strand, within IAI46_25225at 5386.374 kb on + strand, within IAI46_25225at 5386.375 kb on - strand, within IAI46_25225at 5386.375 kb on - strand, within IAI46_25225at 5386.394 kb on - strand, within IAI46_25225at 5386.437 kb on + strand, within IAI46_25225at 5386.438 kb on - strand, within IAI46_25225at 5386.441 kb on + strand, within IAI46_25225at 5386.441 kb on + strand, within IAI46_25225at 5386.441 kb on + strand, within IAI46_25225at 5386.441 kb on + strand, within IAI46_25225at 5386.441 kb on + strand, within IAI46_25225at 5386.442 kb on - strand, within IAI46_25225at 5386.449 kb on + strand, within IAI46_25225at 5386.449 kb on + strand, within IAI46_25225at 5386.449 kb on + strand, within IAI46_25225at 5386.450 kb on - strand, within IAI46_25225at 5386.450 kb on - strand, within IAI46_25225at 5386.501 kb on - strand, within IAI46_25225at 5386.501 kb on - strand, within IAI46_25225at 5386.501 kb on - strand, within IAI46_25225at 5386.518 kb on + strand, within IAI46_25225at 5386.572 kb on + strand, within IAI46_25225at 5386.572 kb on + strand, within IAI46_25225at 5386.573 kb on - strand, within IAI46_25225at 5386.573 kb on - strand, within IAI46_25225at 5386.573 kb on - strand, within IAI46_25225at 5386.573 kb on - strand, within IAI46_25225at 5386.595 kb on - strand, within IAI46_25225at 5386.623 kb on + strand, within IAI46_25225at 5386.623 kb on + strand, within IAI46_25225at 5386.623 kb on + strand, within IAI46_25225at 5386.623 kb on + strand, within IAI46_25225at 5386.623 kb on + strand, within IAI46_25225at 5386.623 kb on + strand, within IAI46_25225at 5386.624 kb on - strand, within IAI46_25225at 5386.624 kb on - strand, within IAI46_25225at 5386.624 kb on - strand, within IAI46_25225at 5386.624 kb on - strand, within IAI46_25225at 5386.624 kb on - strand, within IAI46_25225at 5386.624 kb on - strand, within IAI46_25225at 5386.624 kb on - strand, within IAI46_25225at 5386.626 kb on + strand, within IAI46_25225at 5386.626 kb on + strand, within IAI46_25225at 5386.626 kb on + strand, within IAI46_25225at 5386.626 kb on + strand, within IAI46_25225at 5386.626 kb on + strand, within IAI46_25225at 5386.627 kb on - strand, within IAI46_25225at 5386.627 kb on - strand, within IAI46_25225at 5386.627 kb on - strand, within IAI46_25225at 5386.627 kb on - strand, within IAI46_25225at 5386.629 kb on + strand, within IAI46_25225at 5386.629 kb on + strand, within IAI46_25225at 5386.629 kb on + strand, within IAI46_25225at 5386.727 kb on + strand, within IAI46_25225at 5386.727 kb on + strand, within IAI46_25225at 5386.727 kb on + strand, within IAI46_25225at 5386.728 kb on - strand, within IAI46_25225at 5386.728 kb on - strand, within IAI46_25225at 5386.728 kb on - strand, within IAI46_25225at 5386.762 kb on - strand, within IAI46_25225at 5386.834 kb on + strand, within IAI46_25225at 5386.834 kb on + strand, within IAI46_25225at 5386.835 kb on - strand, within IAI46_25225at 5386.835 kb on - strand, within IAI46_25225at 5386.838 kb on + strandat 5386.839 kb on - strandat 5386.893 kb on - strandat 5386.916 kb on + strandat 5386.920 kb on - strandat 5386.962 kb on + strandat 5387.058 kb on + strandat 5387.141 kb on - strand, within IAI46_25230at 5387.252 kb on - strand, within IAI46_25230at 5387.252 kb on - strand, within IAI46_25230at 5387.252 kb on - strand, within IAI46_25230at 5387.252 kb on - strand, within IAI46_25230at 5387.349 kb on + strand, within IAI46_25230at 5387.350 kb on - strand, within IAI46_25230at 5387.350 kb on - strand, within IAI46_25230at 5387.350 kb on - strand, within IAI46_25230at 5387.350 kb on - strand, within IAI46_25230at 5387.354 kb on - strand, within IAI46_25230at 5387.354 kb on - strand, within IAI46_25230at 5387.354 kb on - strand, within IAI46_25230at 5387.355 kb on + strand, within IAI46_25230at 5387.355 kb on + strand, within IAI46_25230at 5387.457 kb on + strand, within IAI46_25230at 5387.457 kb on + strand, within IAI46_25230at 5387.458 kb on - strand, within IAI46_25230at 5387.458 kb on - strand, within IAI46_25230at 5387.458 kb on - strand, within IAI46_25230at 5387.589 kb on - strandat 5387.640 kb on + strandat 5387.640 kb on + strandat 5387.640 kb on + strandat 5387.641 kb on - strandat 5387.641 kb on - strandat 5387.655 kb on + strandat 5387.655 kb on + strandat 5387.655 kb on + strandat 5387.655 kb on + strandat 5387.655 kb on + strandat 5387.655 kb on + strandat 5387.656 kb on - strandat 5387.656 kb on - strandat 5387.681 kb on + strandat 5387.697 kb on - strandat 5387.701 kb on - strandat 5387.731 kb on - strandat 5387.749 kb on + strandat 5387.749 kb on + strandat 5387.877 kb on + strand, within IAI46_25235at 5387.888 kb on + strand, within IAI46_25235at 5387.888 kb on + strand, within IAI46_25235at 5387.888 kb on + strand, within IAI46_25235at 5387.888 kb on + strand, within IAI46_25235at 5387.900 kb on - strand, within IAI46_25235at 5387.900 kb on - strand, within IAI46_25235at 5387.900 kb on - strand, within IAI46_25235

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic
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5,384,971 - IAI46_25220 0.34 +0.7
5,385,096 + IAI46_25220 0.43 -0.1
5,385,096 + IAI46_25220 0.43 -1.0
5,385,097 - IAI46_25220 0.43 -1.8
5,385,148 - IAI46_25220 0.47 +0.5
5,385,193 + IAI46_25220 0.50 +1.2
5,385,194 - IAI46_25220 0.51 -1.3
5,385,219 + IAI46_25220 0.52 -0.1
5,385,219 + IAI46_25220 0.52 -0.6
5,385,219 + IAI46_25220 0.52 -0.8
5,385,219 + IAI46_25220 0.52 -0.3
5,385,268 - IAI46_25220 0.56 +0.8
5,385,268 - IAI46_25220 0.56 -0.6
5,385,297 + IAI46_25220 0.58 -0.4
5,385,298 - IAI46_25220 0.58 -0.1
5,385,298 - IAI46_25220 0.58 +0.5
5,385,375 + IAI46_25220 0.64 -0.8
5,385,375 + IAI46_25220 0.64 +0.3
5,385,376 - IAI46_25220 0.64 +1.6
5,385,376 - IAI46_25220 0.64 -0.0
5,385,376 - IAI46_25220 0.64 -1.4
5,385,403 + IAI46_25220 0.66 -0.0
5,385,403 + IAI46_25220 0.66 +0.3
5,385,403 + IAI46_25220 0.66 -1.4
5,385,403 + IAI46_25220 0.66 +0.4
5,385,404 - IAI46_25220 0.66 +0.1
5,385,404 - IAI46_25220 0.66 +0.5
5,385,404 - IAI46_25220 0.66 +0.8
5,385,404 - IAI46_25220 0.66 -0.1
5,385,404 - IAI46_25220 0.66 +1.4
5,385,463 + IAI46_25220 0.71 -0.0
5,385,463 + IAI46_25220 0.71 -0.5
5,385,463 + IAI46_25220 0.71 -0.0
5,385,465 + IAI46_25220 0.71 +0.9
5,385,465 + IAI46_25220 0.71 -0.1
5,385,583 + IAI46_25220 0.80 -0.9
5,385,584 - IAI46_25220 0.80 +0.6
5,385,607 + IAI46_25220 0.81 +0.2
5,385,607 + IAI46_25220 0.81 -1.5
5,385,607 + IAI46_25220 0.81 +0.3
5,385,607 + IAI46_25220 0.81 -0.1
5,385,607 + IAI46_25220 0.81 -0.4
5,385,608 - IAI46_25220 0.81 -0.3
5,385,608 - IAI46_25220 0.81 -0.7
5,385,608 - IAI46_25220 0.81 +0.0
5,385,741 + +0.2
5,385,748 + -0.1
5,385,842 + +1.0
5,385,853 + +0.5
5,385,854 - -1.3
5,385,888 - -0.7
5,385,895 - -0.0
5,385,895 - -0.4
5,385,938 + +0.3
5,385,938 + -0.8
5,385,939 - +0.2
5,385,939 - -0.1
5,385,939 - +0.2
5,386,007 + IAI46_25225 0.11 +0.3
5,386,008 - IAI46_25225 0.11 -0.0
5,386,015 + IAI46_25225 0.12 +1.0
5,386,016 - IAI46_25225 0.12 -0.3
5,386,016 - IAI46_25225 0.12 -0.8
5,386,016 - IAI46_25225 0.12 -0.6
5,386,016 - IAI46_25225 0.12 +0.0
5,386,080 + IAI46_25225 0.18 +0.9
5,386,081 - IAI46_25225 0.18 +0.8
5,386,081 - IAI46_25225 0.18 +0.5
5,386,083 + IAI46_25225 0.18 -0.1
5,386,084 - IAI46_25225 0.18 +0.2
5,386,084 - IAI46_25225 0.18 -0.2
5,386,103 - IAI46_25225 0.20 +1.6
5,386,170 + IAI46_25225 0.26 +0.3
5,386,170 + IAI46_25225 0.26 +1.0
5,386,170 + IAI46_25225 0.26 +0.5
5,386,171 - IAI46_25225 0.26 +0.9
5,386,171 - IAI46_25225 0.26 -0.4
5,386,172 + IAI46_25225 0.27 +0.5
5,386,172 + IAI46_25225 0.27 -0.2
5,386,172 + IAI46_25225 0.27 -2.2
5,386,172 + IAI46_25225 0.27 -0.8
5,386,172 + IAI46_25225 0.27 +0.1
5,386,172 + IAI46_25225 0.27 -0.8
5,386,172 + IAI46_25225 0.27 +0.1
5,386,173 - IAI46_25225 0.27 +1.2
5,386,173 - IAI46_25225 0.27 -0.0
5,386,173 - IAI46_25225 0.27 -1.5
5,386,173 - IAI46_25225 0.27 +0.0
5,386,173 - IAI46_25225 0.27 +0.9
5,386,173 - IAI46_25225 0.27 +1.0
5,386,173 - IAI46_25225 0.27 -0.5
5,386,183 - IAI46_25225 0.28 +0.4
5,386,236 + IAI46_25225 0.33 +0.3
5,386,237 - IAI46_25225 0.33 -0.3
5,386,259 + IAI46_25225 0.35 +0.5
5,386,317 + IAI46_25225 0.40 -0.5
5,386,318 - IAI46_25225 0.40 +1.2
5,386,318 - IAI46_25225 0.40 +0.1
5,386,374 + IAI46_25225 0.46 +0.8
5,386,374 + IAI46_25225 0.46 +0.8
5,386,374 + IAI46_25225 0.46 -0.2
5,386,375 - IAI46_25225 0.46 -0.4
5,386,375 - IAI46_25225 0.46 +0.7
5,386,394 - IAI46_25225 0.48 +0.6
5,386,437 + IAI46_25225 0.52 -1.5
5,386,438 - IAI46_25225 0.52 +0.3
5,386,441 + IAI46_25225 0.52 -0.5
5,386,441 + IAI46_25225 0.52 +0.2
5,386,441 + IAI46_25225 0.52 +0.4
5,386,441 + IAI46_25225 0.52 -0.0
5,386,441 + IAI46_25225 0.52 -0.3
5,386,442 - IAI46_25225 0.52 +0.4
5,386,449 + IAI46_25225 0.53 +0.2
5,386,449 + IAI46_25225 0.53 +0.4
5,386,449 + IAI46_25225 0.53 +0.0
5,386,450 - IAI46_25225 0.53 -0.6
5,386,450 - IAI46_25225 0.53 +0.8
5,386,501 - IAI46_25225 0.58 +0.3
5,386,501 - IAI46_25225 0.58 +0.7
5,386,501 - IAI46_25225 0.58 -1.5
5,386,518 + IAI46_25225 0.60 +0.3
5,386,572 + IAI46_25225 0.65 +0.9
5,386,572 + IAI46_25225 0.65 +0.4
5,386,573 - IAI46_25225 0.65 +0.6
5,386,573 - IAI46_25225 0.65 -0.9
5,386,573 - IAI46_25225 0.65 -0.1
5,386,573 - IAI46_25225 0.65 -0.0
5,386,595 - IAI46_25225 0.67 -0.0
5,386,623 + IAI46_25225 0.70 -0.3
5,386,623 + IAI46_25225 0.70 -0.6
5,386,623 + IAI46_25225 0.70 -0.3
5,386,623 + IAI46_25225 0.70 +0.3
5,386,623 + IAI46_25225 0.70 +0.4
5,386,623 + IAI46_25225 0.70 +0.1
5,386,624 - IAI46_25225 0.70 -0.3
5,386,624 - IAI46_25225 0.70 -0.3
5,386,624 - IAI46_25225 0.70 +0.2
5,386,624 - IAI46_25225 0.70 -0.4
5,386,624 - IAI46_25225 0.70 -0.4
5,386,624 - IAI46_25225 0.70 -0.4
5,386,624 - IAI46_25225 0.70 -0.7
5,386,626 + IAI46_25225 0.70 -0.3
5,386,626 + IAI46_25225 0.70 +0.7
5,386,626 + IAI46_25225 0.70 +0.9
5,386,626 + IAI46_25225 0.70 -0.1
5,386,626 + IAI46_25225 0.70 -0.5
5,386,627 - IAI46_25225 0.70 +0.2
5,386,627 - IAI46_25225 0.70 -0.5
5,386,627 - IAI46_25225 0.70 -0.4
5,386,627 - IAI46_25225 0.70 +0.6
5,386,629 + IAI46_25225 0.70 -1.8
5,386,629 + IAI46_25225 0.70 +0.1
5,386,629 + IAI46_25225 0.70 -1.1
5,386,727 + IAI46_25225 0.79 -0.5
5,386,727 + IAI46_25225 0.79 -2.7
5,386,727 + IAI46_25225 0.79 +0.9
5,386,728 - IAI46_25225 0.80 +1.3
5,386,728 - IAI46_25225 0.80 +0.3
5,386,728 - IAI46_25225 0.80 +0.1
5,386,762 - IAI46_25225 0.83 +0.3
5,386,834 + IAI46_25225 0.90 -0.6
5,386,834 + IAI46_25225 0.90 -0.3
5,386,835 - IAI46_25225 0.90 +0.1
5,386,835 - IAI46_25225 0.90 -0.1
5,386,838 + +0.4
5,386,839 - -0.3
5,386,893 - -0.2
5,386,916 + +0.6
5,386,920 - -0.4
5,386,962 + -0.2
5,387,058 + -0.6
5,387,141 - IAI46_25230 0.18 +0.6
5,387,252 - IAI46_25230 0.38 -0.4
5,387,252 - IAI46_25230 0.38 -0.0
5,387,252 - IAI46_25230 0.38 +0.8
5,387,252 - IAI46_25230 0.38 -0.6
5,387,349 + IAI46_25230 0.55 -0.0
5,387,350 - IAI46_25230 0.55 -0.9
5,387,350 - IAI46_25230 0.55 -1.0
5,387,350 - IAI46_25230 0.55 +0.6
5,387,350 - IAI46_25230 0.55 -0.2
5,387,354 - IAI46_25230 0.56 +0.2
5,387,354 - IAI46_25230 0.56 -1.9
5,387,354 - IAI46_25230 0.56 -0.9
5,387,355 + IAI46_25230 0.56 -0.4
5,387,355 + IAI46_25230 0.56 +0.4
5,387,457 + IAI46_25230 0.74 -1.7
5,387,457 + IAI46_25230 0.74 -0.3
5,387,458 - IAI46_25230 0.74 -0.4
5,387,458 - IAI46_25230 0.74 +0.0
5,387,458 - IAI46_25230 0.74 +1.2
5,387,589 - -0.7
5,387,640 + -0.1
5,387,640 + -1.2
5,387,640 + +0.3
5,387,641 - +0.1
5,387,641 - -0.1
5,387,655 + +1.0
5,387,655 + -0.3
5,387,655 + +0.2
5,387,655 + +0.7
5,387,655 + -0.2
5,387,655 + +0.3
5,387,656 - +1.2
5,387,656 - +0.5
5,387,681 + -1.3
5,387,697 - +0.1
5,387,701 - +0.2
5,387,731 - -0.6
5,387,749 + +0.4
5,387,749 + +0.0
5,387,877 + IAI46_25235 0.13 +0.4
5,387,888 + IAI46_25235 0.14 -0.2
5,387,888 + IAI46_25235 0.14 -0.5
5,387,888 + IAI46_25235 0.14 -0.5
5,387,888 + IAI46_25235 0.14 -0.2
5,387,900 - IAI46_25235 0.16 -2.7
5,387,900 - IAI46_25235 0.16 +0.4
5,387,900 - IAI46_25235 0.16 +0.8

Or see this region's nucleotide sequence