Strain Fitness in Serratia liquefaciens MT49 around IAI46_21720

Experiment: Cobalt chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_21705 and IAI46_21710 overlap by 1 nucleotidesIAI46_21710 and IAI46_21715 are separated by 138 nucleotidesIAI46_21715 and IAI46_21720 are separated by 3 nucleotidesIAI46_21720 and IAI46_21725 are separated by 458 nucleotides IAI46_21705: IAI46_21705 - type II toxin-antitoxin system RelE/ParE family toxin, at 4,616,172 to 4,616,465 _21705 IAI46_21710: IAI46_21710 - type II toxin-antitoxin system ParD family antitoxin, at 4,616,465 to 4,616,725 _21710 IAI46_21715: IAI46_21715 - TonB system transport protein ExbD, at 4,616,864 to 4,617,286 _21715 IAI46_21720: IAI46_21720 - tol-pal system-associated acyl-CoA thioesterase, at 4,617,290 to 4,618,264 _21720 IAI46_21725: IAI46_21725 - cystathionine beta-lyase, at 4,618,723 to 4,619,919 _21725 Position (kb) 4617 4618 4619Strain fitness (log2 ratio) -2 -1 0 1 2at 4616.320 kb on + strand, within IAI46_21705at 4616.357 kb on + strand, within IAI46_21705at 4616.357 kb on + strand, within IAI46_21705at 4616.357 kb on + strand, within IAI46_21705at 4616.359 kb on + strand, within IAI46_21705at 4616.359 kb on + strand, within IAI46_21705at 4616.359 kb on + strand, within IAI46_21705at 4616.359 kb on + strand, within IAI46_21705at 4616.359 kb on + strand, within IAI46_21705at 4616.360 kb on - strand, within IAI46_21705at 4616.373 kb on - strand, within IAI46_21705at 4616.408 kb on + strand, within IAI46_21705at 4616.409 kb on - strand, within IAI46_21705at 4616.435 kb on - strand, within IAI46_21705at 4616.435 kb on - strand, within IAI46_21705at 4616.496 kb on + strand, within IAI46_21710at 4616.496 kb on + strand, within IAI46_21710at 4616.561 kb on + strand, within IAI46_21710at 4616.633 kb on + strand, within IAI46_21710at 4616.705 kb on + strandat 4616.716 kb on + strandat 4616.752 kb on + strandat 4616.760 kb on - strandat 4616.762 kb on + strandat 4616.800 kb on - strandat 4616.816 kb on - strandat 4616.917 kb on + strand, within IAI46_21715at 4616.927 kb on - strand, within IAI46_21715at 4616.933 kb on + strand, within IAI46_21715at 4616.933 kb on + strand, within IAI46_21715at 4617.063 kb on + strand, within IAI46_21715at 4617.063 kb on + strand, within IAI46_21715at 4617.063 kb on + strand, within IAI46_21715at 4617.063 kb on + strand, within IAI46_21715at 4617.064 kb on - strand, within IAI46_21715at 4617.155 kb on - strand, within IAI46_21715at 4617.158 kb on + strand, within IAI46_21715at 4617.158 kb on + strand, within IAI46_21715at 4617.158 kb on + strand, within IAI46_21715at 4617.159 kb on - strand, within IAI46_21715at 4617.159 kb on - strand, within IAI46_21715at 4617.159 kb on - strand, within IAI46_21715at 4617.159 kb on - strand, within IAI46_21715at 4617.184 kb on + strand, within IAI46_21715at 4617.185 kb on - strand, within IAI46_21715at 4617.272 kb on + strandat 4617.272 kb on + strandat 4617.272 kb on + strandat 4617.272 kb on + strandat 4617.286 kb on + strandat 4617.287 kb on - strandat 4617.287 kb on - strandat 4617.441 kb on + strand, within IAI46_21720at 4617.442 kb on - strand, within IAI46_21720at 4617.830 kb on + strand, within IAI46_21720at 4617.830 kb on + strand, within IAI46_21720at 4617.831 kb on - strand, within IAI46_21720at 4617.831 kb on - strand, within IAI46_21720at 4617.831 kb on - strand, within IAI46_21720at 4617.923 kb on - strand, within IAI46_21720at 4617.978 kb on + strand, within IAI46_21720at 4617.979 kb on - strand, within IAI46_21720at 4617.979 kb on - strand, within IAI46_21720at 4617.979 kb on - strand, within IAI46_21720at 4617.979 kb on - strand, within IAI46_21720at 4617.982 kb on + strand, within IAI46_21720at 4617.983 kb on - strand, within IAI46_21720at 4617.983 kb on - strand, within IAI46_21720at 4618.320 kb on + strandat 4618.382 kb on + strandat 4618.383 kb on - strandat 4618.399 kb on + strandat 4618.399 kb on + strandat 4618.399 kb on + strandat 4618.399 kb on + strandat 4618.400 kb on - strandat 4618.439 kb on + strandat 4618.440 kb on - strandat 4618.440 kb on - strandat 4618.440 kb on - strandat 4618.441 kb on + strandat 4618.441 kb on + strandat 4618.441 kb on + strandat 4618.441 kb on + strandat 4618.442 kb on - strandat 4618.442 kb on - strandat 4618.442 kb on - strandat 4618.442 kb on - strandat 4618.442 kb on - strandat 4618.442 kb on - strandat 4618.442 kb on - strandat 4618.442 kb on - strandat 4618.442 kb on - strandat 4618.442 kb on - strandat 4618.445 kb on + strandat 4618.454 kb on + strandat 4618.454 kb on + strandat 4618.524 kb on - strandat 4618.609 kb on - strandat 4618.609 kb on - strandat 4618.650 kb on + strandat 4618.651 kb on - strandat 4618.651 kb on - strandat 4618.652 kb on + strandat 4618.666 kb on - strandat 4618.666 kb on - strandat 4618.666 kb on - strandat 4618.670 kb on + strandat 4618.670 kb on + strandat 4618.671 kb on - strandat 4618.671 kb on - strandat 4618.671 kb on - strandat 4618.671 kb on - strandat 4618.671 kb on - strandat 4618.671 kb on - strandat 4618.677 kb on + strandat 4618.677 kb on + strandat 4618.678 kb on - strandat 4618.678 kb on - strandat 4618.722 kb on + strandat 4618.723 kb on - strandat 4618.723 kb on - strandat 4618.747 kb on - strandat 4618.777 kb on + strandat 4618.777 kb on + strandat 4618.778 kb on - strandat 4618.779 kb on + strandat 4618.827 kb on - strandat 4618.827 kb on - strandat 4619.054 kb on - strand, within IAI46_21725at 4619.054 kb on - strand, within IAI46_21725at 4619.054 kb on - strand, within IAI46_21725at 4619.082 kb on + strand, within IAI46_21725at 4619.082 kb on + strand, within IAI46_21725at 4619.082 kb on + strand, within IAI46_21725at 4619.113 kb on + strand, within IAI46_21725at 4619.202 kb on + strand, within IAI46_21725at 4619.202 kb on + strand, within IAI46_21725at 4619.203 kb on - strand, within IAI46_21725at 4619.203 kb on - strand, within IAI46_21725

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic
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4,616,320 + IAI46_21705 0.50 -0.6
4,616,357 + IAI46_21705 0.63 +1.7
4,616,357 + IAI46_21705 0.63 -0.1
4,616,357 + IAI46_21705 0.63 +0.1
4,616,359 + IAI46_21705 0.64 -0.8
4,616,359 + IAI46_21705 0.64 -0.8
4,616,359 + IAI46_21705 0.64 -1.7
4,616,359 + IAI46_21705 0.64 -0.1
4,616,359 + IAI46_21705 0.64 +0.4
4,616,360 - IAI46_21705 0.64 +0.6
4,616,373 - IAI46_21705 0.68 -0.1
4,616,408 + IAI46_21705 0.80 +0.3
4,616,409 - IAI46_21705 0.81 +1.3
4,616,435 - IAI46_21705 0.89 +0.4
4,616,435 - IAI46_21705 0.89 -0.3
4,616,496 + IAI46_21710 0.12 +0.5
4,616,496 + IAI46_21710 0.12 -0.1
4,616,561 + IAI46_21710 0.37 -0.8
4,616,633 + IAI46_21710 0.64 +0.4
4,616,705 + -0.1
4,616,716 + -0.0
4,616,752 + +0.3
4,616,760 - -0.2
4,616,762 + +1.5
4,616,800 - +0.2
4,616,816 - +0.5
4,616,917 + IAI46_21715 0.13 -0.0
4,616,927 - IAI46_21715 0.15 -1.6
4,616,933 + IAI46_21715 0.16 +0.8
4,616,933 + IAI46_21715 0.16 +0.7
4,617,063 + IAI46_21715 0.47 -0.8
4,617,063 + IAI46_21715 0.47 +1.1
4,617,063 + IAI46_21715 0.47 -0.6
4,617,063 + IAI46_21715 0.47 +0.2
4,617,064 - IAI46_21715 0.47 +0.6
4,617,155 - IAI46_21715 0.69 +0.2
4,617,158 + IAI46_21715 0.70 -0.5
4,617,158 + IAI46_21715 0.70 -0.8
4,617,158 + IAI46_21715 0.70 +0.6
4,617,159 - IAI46_21715 0.70 +1.5
4,617,159 - IAI46_21715 0.70 -0.1
4,617,159 - IAI46_21715 0.70 +0.4
4,617,159 - IAI46_21715 0.70 +0.4
4,617,184 + IAI46_21715 0.76 -0.8
4,617,185 - IAI46_21715 0.76 +0.4
4,617,272 + +0.2
4,617,272 + -0.8
4,617,272 + +1.4
4,617,272 + -0.0
4,617,286 + -0.2
4,617,287 - +0.9
4,617,287 - +1.3
4,617,441 + IAI46_21720 0.15 +0.5
4,617,442 - IAI46_21720 0.16 -0.2
4,617,830 + IAI46_21720 0.55 +0.1
4,617,830 + IAI46_21720 0.55 -0.0
4,617,831 - IAI46_21720 0.55 -0.1
4,617,831 - IAI46_21720 0.55 +0.9
4,617,831 - IAI46_21720 0.55 +0.1
4,617,923 - IAI46_21720 0.65 +0.3
4,617,978 + IAI46_21720 0.71 +0.0
4,617,979 - IAI46_21720 0.71 +0.6
4,617,979 - IAI46_21720 0.71 -0.0
4,617,979 - IAI46_21720 0.71 +0.4
4,617,979 - IAI46_21720 0.71 -0.2
4,617,982 + IAI46_21720 0.71 +1.0
4,617,983 - IAI46_21720 0.71 +0.7
4,617,983 - IAI46_21720 0.71 +0.6
4,618,320 + -0.5
4,618,382 + +0.4
4,618,383 - -0.2
4,618,399 + -0.1
4,618,399 + +0.6
4,618,399 + -0.3
4,618,399 + -0.0
4,618,400 - -0.3
4,618,439 + +0.2
4,618,440 - -0.4
4,618,440 - -1.0
4,618,440 - +0.7
4,618,441 + +1.8
4,618,441 + +0.3
4,618,441 + +0.7
4,618,441 + +0.1
4,618,442 - -1.1
4,618,442 - -0.1
4,618,442 - -0.5
4,618,442 - +0.6
4,618,442 - -2.1
4,618,442 - +0.6
4,618,442 - +0.8
4,618,442 - +0.2
4,618,442 - +0.6
4,618,442 - +0.8
4,618,445 + +0.6
4,618,454 + +0.9
4,618,454 + -0.1
4,618,524 - +0.2
4,618,609 - +0.4
4,618,609 - +1.1
4,618,650 + +0.0
4,618,651 - -0.6
4,618,651 - -0.2
4,618,652 + +1.0
4,618,666 - -0.3
4,618,666 - +0.0
4,618,666 - +0.6
4,618,670 + -1.2
4,618,670 + +0.0
4,618,671 - -0.3
4,618,671 - +0.0
4,618,671 - +0.2
4,618,671 - +0.1
4,618,671 - -0.9
4,618,671 - -1.0
4,618,677 + -0.1
4,618,677 + +0.6
4,618,678 - +0.3
4,618,678 - -1.6
4,618,722 + -0.1
4,618,723 - +1.1
4,618,723 - +0.2
4,618,747 - +0.9
4,618,777 + +1.7
4,618,777 + +0.2
4,618,778 - +0.5
4,618,779 + +0.2
4,618,827 - +0.5
4,618,827 - -0.4
4,619,054 - IAI46_21725 0.28 +0.2
4,619,054 - IAI46_21725 0.28 +0.2
4,619,054 - IAI46_21725 0.28 +0.2
4,619,082 + IAI46_21725 0.30 -0.2
4,619,082 + IAI46_21725 0.30 +0.8
4,619,082 + IAI46_21725 0.30 +1.2
4,619,113 + IAI46_21725 0.33 +1.8
4,619,202 + IAI46_21725 0.40 -1.3
4,619,202 + IAI46_21725 0.40 +0.2
4,619,203 - IAI46_21725 0.40 +0.7
4,619,203 - IAI46_21725 0.40 +0.5

Or see this region's nucleotide sequence