Strain Fitness in Serratia liquefaciens MT49 around IAI46_20560

Experiment: Cobalt chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_20555 and IAI46_20560 are separated by 39 nucleotidesIAI46_20560 and IAI46_20565 are separated by 10 nucleotidesIAI46_20565 and IAI46_20570 overlap by 11 nucleotides IAI46_20555: IAI46_20555 - ABC transporter ATP-binding protein/permease, at 4,348,563 to 4,350,299 _20555 IAI46_20560: IAI46_20560 - PTS sugar transporter subunit IIA, at 4,350,339 to 4,350,773 _20560 IAI46_20565: IAI46_20565 - PTS system mannose/fructose/sorbose family transporter subunit IID, at 4,350,784 to 4,351,677 _20565 IAI46_20570: IAI46_20570 - PTS sugar transporter subunit IIC, at 4,351,667 to 4,352,446 _20570 Position (kb) 4350 4351Strain fitness (log2 ratio) -1 0 1at 4349.378 kb on + strand, within IAI46_20555at 4349.422 kb on + strand, within IAI46_20555at 4349.483 kb on - strand, within IAI46_20555at 4349.483 kb on - strand, within IAI46_20555at 4349.503 kb on + strand, within IAI46_20555at 4349.503 kb on + strand, within IAI46_20555at 4349.504 kb on - strand, within IAI46_20555at 4349.504 kb on - strand, within IAI46_20555at 4349.701 kb on + strand, within IAI46_20555at 4349.701 kb on + strand, within IAI46_20555at 4349.702 kb on - strand, within IAI46_20555at 4349.702 kb on - strand, within IAI46_20555at 4349.801 kb on + strand, within IAI46_20555at 4349.811 kb on + strand, within IAI46_20555at 4349.849 kb on + strand, within IAI46_20555at 4349.849 kb on + strand, within IAI46_20555at 4349.849 kb on + strand, within IAI46_20555at 4349.854 kb on + strand, within IAI46_20555at 4349.855 kb on - strand, within IAI46_20555at 4349.874 kb on + strand, within IAI46_20555at 4349.874 kb on + strand, within IAI46_20555at 4349.874 kb on + strand, within IAI46_20555at 4349.874 kb on + strand, within IAI46_20555at 4349.875 kb on - strand, within IAI46_20555at 4349.876 kb on + strand, within IAI46_20555at 4349.876 kb on + strand, within IAI46_20555at 4349.877 kb on - strand, within IAI46_20555at 4349.889 kb on - strand, within IAI46_20555at 4350.141 kb on + strandat 4350.142 kb on - strandat 4350.298 kb on - strandat 4350.319 kb on - strandat 4350.319 kb on - strandat 4350.453 kb on + strand, within IAI46_20560at 4350.495 kb on - strand, within IAI46_20560at 4350.495 kb on - strand, within IAI46_20560at 4350.575 kb on + strand, within IAI46_20560at 4350.576 kb on - strand, within IAI46_20560at 4350.630 kb on - strand, within IAI46_20560at 4350.642 kb on + strand, within IAI46_20560at 4350.790 kb on + strandat 4350.790 kb on + strandat 4350.791 kb on - strandat 4350.888 kb on + strand, within IAI46_20565at 4350.889 kb on - strand, within IAI46_20565at 4350.995 kb on + strand, within IAI46_20565at 4350.995 kb on + strand, within IAI46_20565at 4350.995 kb on + strand, within IAI46_20565at 4350.995 kb on + strand, within IAI46_20565at 4350.995 kb on + strand, within IAI46_20565at 4350.995 kb on + strand, within IAI46_20565at 4350.995 kb on + strand, within IAI46_20565at 4350.996 kb on - strand, within IAI46_20565at 4350.996 kb on - strand, within IAI46_20565at 4351.104 kb on - strand, within IAI46_20565at 4351.110 kb on - strand, within IAI46_20565at 4351.292 kb on - strand, within IAI46_20565at 4351.383 kb on + strand, within IAI46_20565at 4351.384 kb on - strand, within IAI46_20565at 4351.444 kb on + strand, within IAI46_20565at 4351.463 kb on + strand, within IAI46_20565at 4351.463 kb on + strand, within IAI46_20565at 4351.485 kb on + strand, within IAI46_20565at 4351.485 kb on + strand, within IAI46_20565at 4351.486 kb on - strand, within IAI46_20565at 4351.486 kb on - strand, within IAI46_20565at 4351.493 kb on + strand, within IAI46_20565at 4351.494 kb on - strand, within IAI46_20565at 4351.494 kb on - strand, within IAI46_20565at 4351.494 kb on - strand, within IAI46_20565at 4351.494 kb on - strand, within IAI46_20565at 4351.516 kb on + strand, within IAI46_20565at 4351.516 kb on + strand, within IAI46_20565at 4351.597 kb on + strandat 4351.627 kb on - strandat 4351.669 kb on - strandat 4351.669 kb on - strandat 4351.698 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic
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4,349,378 + IAI46_20555 0.47 +1.1
4,349,422 + IAI46_20555 0.49 -1.4
4,349,483 - IAI46_20555 0.53 -0.0
4,349,483 - IAI46_20555 0.53 +0.3
4,349,503 + IAI46_20555 0.54 +0.2
4,349,503 + IAI46_20555 0.54 -0.2
4,349,504 - IAI46_20555 0.54 +0.7
4,349,504 - IAI46_20555 0.54 +0.2
4,349,701 + IAI46_20555 0.66 +0.1
4,349,701 + IAI46_20555 0.66 +0.3
4,349,702 - IAI46_20555 0.66 -0.4
4,349,702 - IAI46_20555 0.66 -0.2
4,349,801 + IAI46_20555 0.71 -0.8
4,349,811 + IAI46_20555 0.72 -0.4
4,349,849 + IAI46_20555 0.74 +1.6
4,349,849 + IAI46_20555 0.74 +1.2
4,349,849 + IAI46_20555 0.74 +1.2
4,349,854 + IAI46_20555 0.74 -1.2
4,349,855 - IAI46_20555 0.74 -0.1
4,349,874 + IAI46_20555 0.75 +0.0
4,349,874 + IAI46_20555 0.75 -0.2
4,349,874 + IAI46_20555 0.75 +0.4
4,349,874 + IAI46_20555 0.75 +1.0
4,349,875 - IAI46_20555 0.76 -0.1
4,349,876 + IAI46_20555 0.76 +1.6
4,349,876 + IAI46_20555 0.76 +0.1
4,349,877 - IAI46_20555 0.76 +0.1
4,349,889 - IAI46_20555 0.76 -0.8
4,350,141 + +0.3
4,350,142 - -1.3
4,350,298 - +1.2
4,350,319 - +0.2
4,350,319 - -1.3
4,350,453 + IAI46_20560 0.26 +1.0
4,350,495 - IAI46_20560 0.36 +0.2
4,350,495 - IAI46_20560 0.36 +0.2
4,350,575 + IAI46_20560 0.54 +0.7
4,350,576 - IAI46_20560 0.54 +0.2
4,350,630 - IAI46_20560 0.67 +0.4
4,350,642 + IAI46_20560 0.70 +0.1
4,350,790 + +0.1
4,350,790 + +0.2
4,350,791 - -0.3
4,350,888 + IAI46_20565 0.12 -0.9
4,350,889 - IAI46_20565 0.12 +0.4
4,350,995 + IAI46_20565 0.24 +0.2
4,350,995 + IAI46_20565 0.24 +0.0
4,350,995 + IAI46_20565 0.24 -0.3
4,350,995 + IAI46_20565 0.24 +0.9
4,350,995 + IAI46_20565 0.24 -0.8
4,350,995 + IAI46_20565 0.24 +1.0
4,350,995 + IAI46_20565 0.24 +0.5
4,350,996 - IAI46_20565 0.24 +1.0
4,350,996 - IAI46_20565 0.24 -0.6
4,351,104 - IAI46_20565 0.36 -0.2
4,351,110 - IAI46_20565 0.36 -1.1
4,351,292 - IAI46_20565 0.57 +0.3
4,351,383 + IAI46_20565 0.67 +0.7
4,351,384 - IAI46_20565 0.67 +1.2
4,351,444 + IAI46_20565 0.74 +0.5
4,351,463 + IAI46_20565 0.76 +0.3
4,351,463 + IAI46_20565 0.76 +0.6
4,351,485 + IAI46_20565 0.78 -0.3
4,351,485 + IAI46_20565 0.78 -0.3
4,351,486 - IAI46_20565 0.79 -0.1
4,351,486 - IAI46_20565 0.79 +0.1
4,351,493 + IAI46_20565 0.79 -1.4
4,351,494 - IAI46_20565 0.79 +0.7
4,351,494 - IAI46_20565 0.79 +0.2
4,351,494 - IAI46_20565 0.79 -0.1
4,351,494 - IAI46_20565 0.79 +0.5
4,351,516 + IAI46_20565 0.82 +0.2
4,351,516 + IAI46_20565 0.82 -0.5
4,351,597 + +0.3
4,351,627 - -0.4
4,351,669 - -0.8
4,351,669 - -1.2
4,351,698 - +0.6

Or see this region's nucleotide sequence