Strain Fitness in Serratia liquefaciens MT49 around IAI46_19260

Experiment: Cobalt chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_19255 and IAI46_19260 are separated by 254 nucleotidesIAI46_19260 and IAI46_19265 are separated by 11 nucleotidesIAI46_19265 and IAI46_19270 are separated by 13 nucleotides IAI46_19255: IAI46_19255 - ribosome biogenesis GTPase Der, at 4,063,728 to 4,065,215 _19255 IAI46_19260: IAI46_19260 - outer membrane protein assembly factor BamB, at 4,065,470 to 4,066,651 _19260 IAI46_19265: IAI46_19265 - YfgM family protein, at 4,066,663 to 4,067,283 _19265 IAI46_19270: IAI46_19270 - histidine--tRNA ligase, at 4,067,297 to 4,068,571 _19270 Position (kb) 4065 4066 4067Strain fitness (log2 ratio) -2 -1 0 1 2at 4065.283 kb on - strandat 4065.381 kb on - strandat 4065.389 kb on - strandat 4065.389 kb on - strandat 4065.389 kb on - strandat 4065.472 kb on - strandat 4065.560 kb on - strandat 4065.602 kb on - strand, within IAI46_19260at 4065.652 kb on - strand, within IAI46_19260at 4065.652 kb on - strand, within IAI46_19260at 4065.760 kb on - strand, within IAI46_19260at 4065.760 kb on - strand, within IAI46_19260at 4065.760 kb on - strand, within IAI46_19260at 4065.867 kb on - strand, within IAI46_19260at 4065.874 kb on - strand, within IAI46_19260at 4065.956 kb on - strand, within IAI46_19260at 4065.993 kb on - strand, within IAI46_19260at 4066.153 kb on + strand, within IAI46_19260at 4066.154 kb on - strand, within IAI46_19260at 4066.227 kb on - strand, within IAI46_19260at 4066.227 kb on - strand, within IAI46_19260at 4066.227 kb on - strand, within IAI46_19260at 4066.281 kb on + strand, within IAI46_19260at 4066.435 kb on - strand, within IAI46_19260at 4066.474 kb on - strand, within IAI46_19260at 4066.562 kb on - strandat 4066.678 kb on - strandat 4066.902 kb on + strand, within IAI46_19265at 4066.903 kb on - strand, within IAI46_19265at 4067.083 kb on - strand, within IAI46_19265at 4067.115 kb on - strand, within IAI46_19265at 4067.115 kb on - strand, within IAI46_19265at 4067.272 kb on - strandat 4067.272 kb on - strandat 4067.274 kb on - strandat 4067.304 kb on - strandat 4067.304 kb on - strandat 4067.304 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic
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4,065,283 - -1.6
4,065,381 - +0.4
4,065,389 - -1.3
4,065,389 - +0.2
4,065,389 - +1.4
4,065,472 - +0.4
4,065,560 - -0.1
4,065,602 - IAI46_19260 0.11 +2.1
4,065,652 - IAI46_19260 0.15 -0.7
4,065,652 - IAI46_19260 0.15 +0.1
4,065,760 - IAI46_19260 0.25 -0.1
4,065,760 - IAI46_19260 0.25 +0.8
4,065,760 - IAI46_19260 0.25 +1.4
4,065,867 - IAI46_19260 0.34 -1.3
4,065,874 - IAI46_19260 0.34 -0.5
4,065,956 - IAI46_19260 0.41 -0.8
4,065,993 - IAI46_19260 0.44 -0.2
4,066,153 + IAI46_19260 0.58 -0.2
4,066,154 - IAI46_19260 0.58 -0.2
4,066,227 - IAI46_19260 0.64 +0.5
4,066,227 - IAI46_19260 0.64 -1.1
4,066,227 - IAI46_19260 0.64 -0.1
4,066,281 + IAI46_19260 0.69 +1.4
4,066,435 - IAI46_19260 0.82 -0.2
4,066,474 - IAI46_19260 0.85 -1.8
4,066,562 - -0.2
4,066,678 - +0.8
4,066,902 + IAI46_19265 0.38 -0.5
4,066,903 - IAI46_19265 0.39 +0.2
4,067,083 - IAI46_19265 0.68 -0.1
4,067,115 - IAI46_19265 0.73 +0.6
4,067,115 - IAI46_19265 0.73 +0.1
4,067,272 - +0.2
4,067,272 - +1.3
4,067,274 - +0.7
4,067,304 - -0.7
4,067,304 - -0.1
4,067,304 - -0.9

Or see this region's nucleotide sequence