Strain Fitness in Serratia liquefaciens MT49 around IAI46_16885

Experiment: Cobalt chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_16880 and IAI46_16885 overlap by 4 nucleotidesIAI46_16885 and IAI46_16890 overlap by 4 nucleotidesIAI46_16890 and IAI46_16895 are separated by 10 nucleotides IAI46_16880: IAI46_16880 - ABC transporter ATP-binding protein, at 3,538,453 to 3,540,129 _16880 IAI46_16885: IAI46_16885 - ABC transporter permease, at 3,540,126 to 3,541,016 _16885 IAI46_16890: IAI46_16890 - ABC transporter permease, at 3,541,013 to 3,541,957 _16890 IAI46_16895: IAI46_16895 - TIGR04028 family ABC transporter substrate-binding protein, at 3,541,968 to 3,543,593 _16895 Position (kb) 3540 3541 3542Strain fitness (log2 ratio) -1 0 1 2at 3539.161 kb on - strand, within IAI46_16880at 3539.345 kb on + strand, within IAI46_16880at 3539.413 kb on + strand, within IAI46_16880at 3539.888 kb on - strand, within IAI46_16880at 3539.888 kb on - strand, within IAI46_16880at 3540.053 kb on + strandat 3540.110 kb on - strandat 3540.110 kb on - strandat 3540.130 kb on - strandat 3540.130 kb on - strandat 3540.130 kb on - strandat 3540.211 kb on - strandat 3540.230 kb on + strand, within IAI46_16885at 3540.231 kb on - strand, within IAI46_16885at 3540.411 kb on - strand, within IAI46_16885at 3540.424 kb on + strand, within IAI46_16885at 3540.425 kb on - strand, within IAI46_16885at 3540.439 kb on + strand, within IAI46_16885at 3540.681 kb on + strand, within IAI46_16885at 3540.742 kb on + strand, within IAI46_16885at 3540.743 kb on - strand, within IAI46_16885at 3540.913 kb on - strand, within IAI46_16885at 3541.007 kb on + strandat 3541.008 kb on - strandat 3541.240 kb on + strand, within IAI46_16890at 3541.353 kb on - strand, within IAI46_16890at 3541.594 kb on + strand, within IAI46_16890at 3541.594 kb on + strand, within IAI46_16890at 3541.755 kb on + strand, within IAI46_16890at 3541.756 kb on - strand, within IAI46_16890at 3541.785 kb on + strand, within IAI46_16890at 3541.880 kb on + strandat 3541.885 kb on + strandat 3541.994 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic
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3,539,161 - IAI46_16880 0.42 +0.7
3,539,345 + IAI46_16880 0.53 +0.5
3,539,413 + IAI46_16880 0.57 +0.5
3,539,888 - IAI46_16880 0.86 -0.5
3,539,888 - IAI46_16880 0.86 -0.2
3,540,053 + -0.4
3,540,110 - +0.4
3,540,110 - +1.2
3,540,130 - +1.0
3,540,130 - +0.5
3,540,130 - -0.4
3,540,211 - +1.3
3,540,230 + IAI46_16885 0.12 -0.6
3,540,231 - IAI46_16885 0.12 +0.3
3,540,411 - IAI46_16885 0.32 +0.9
3,540,424 + IAI46_16885 0.33 +0.5
3,540,425 - IAI46_16885 0.34 -0.3
3,540,439 + IAI46_16885 0.35 -0.6
3,540,681 + IAI46_16885 0.62 +2.2
3,540,742 + IAI46_16885 0.69 -0.9
3,540,743 - IAI46_16885 0.69 -0.2
3,540,913 - IAI46_16885 0.88 +0.3
3,541,007 + +0.1
3,541,008 - +1.2
3,541,240 + IAI46_16890 0.24 +1.2
3,541,353 - IAI46_16890 0.36 -0.8
3,541,594 + IAI46_16890 0.61 -0.6
3,541,594 + IAI46_16890 0.61 -0.4
3,541,755 + IAI46_16890 0.79 +0.1
3,541,756 - IAI46_16890 0.79 +0.9
3,541,785 + IAI46_16890 0.82 +0.6
3,541,880 + +0.7
3,541,885 + +0.3
3,541,994 - +0.4

Or see this region's nucleotide sequence