Experiment: Cobalt chloride 80 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_16285 and IAI46_16290 are separated by 112 nucleotides IAI46_16290 and IAI46_16295 are separated by 113 nucleotides
IAI46_16285: IAI46_16285 - endonuclease/exonuclease/phosphatase family protein, at 3,413,640 to 3,414,719
_16285
IAI46_16290: IAI46_16290 - SDR family oxidoreductase, at 3,414,832 to 3,415,884
_16290
IAI46_16295: IAI46_16295 - LysR family transcriptional regulator, at 3,415,998 to 3,416,930
_16295
Position (kb)
3414
3415
3416 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3414.238 kb on + strand, within IAI46_16285 at 3414.369 kb on + strand, within IAI46_16285 at 3414.369 kb on + strand, within IAI46_16285 at 3414.375 kb on - strand, within IAI46_16285 at 3414.397 kb on - strand, within IAI46_16285 at 3414.481 kb on + strand, within IAI46_16285 at 3414.592 kb on - strand, within IAI46_16285 at 3414.699 kb on + strand at 3414.700 kb on - strand at 3414.723 kb on + strand at 3414.780 kb on - strand at 3414.841 kb on - strand at 3414.950 kb on + strand, within IAI46_16290 at 3415.083 kb on + strand, within IAI46_16290 at 3415.084 kb on - strand, within IAI46_16290 at 3415.116 kb on - strand, within IAI46_16290 at 3415.116 kb on - strand, within IAI46_16290 at 3415.173 kb on + strand, within IAI46_16290 at 3415.174 kb on - strand, within IAI46_16290 at 3415.325 kb on + strand, within IAI46_16290 at 3415.439 kb on + strand, within IAI46_16290 at 3415.458 kb on + strand, within IAI46_16290 at 3415.539 kb on - strand, within IAI46_16290 at 3415.675 kb on - strand, within IAI46_16290 at 3415.745 kb on + strand, within IAI46_16290 at 3415.884 kb on + strand at 3415.884 kb on + strand at 3415.885 kb on - strand at 3415.960 kb on - strand at 3415.969 kb on + strand at 3415.970 kb on - strand at 3415.972 kb on - strand at 3415.972 kb on - strand at 3415.976 kb on - strand at 3415.976 kb on - strand at 3416.441 kb on - strand, within IAI46_16295 at 3416.441 kb on - strand, within IAI46_16295 at 3416.509 kb on - strand, within IAI46_16295 at 3416.605 kb on + strand, within IAI46_16295 at 3416.605 kb on + strand, within IAI46_16295 at 3416.605 kb on + strand, within IAI46_16295 at 3416.606 kb on - strand, within IAI46_16295 at 3416.664 kb on - strand, within IAI46_16295 at 3416.664 kb on - strand, within IAI46_16295 at 3416.856 kb on + strand at 3416.879 kb on + strand at 3416.880 kb on - strand at 3416.880 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic remove 3,414,238 + IAI46_16285 0.55 -0.6 3,414,369 + IAI46_16285 0.68 +0.0 3,414,369 + IAI46_16285 0.68 +0.1 3,414,375 - IAI46_16285 0.68 +0.4 3,414,397 - IAI46_16285 0.70 -1.1 3,414,481 + IAI46_16285 0.78 +0.8 3,414,592 - IAI46_16285 0.88 +0.2 3,414,699 + +0.3 3,414,700 - -0.1 3,414,723 + -1.0 3,414,780 - +1.4 3,414,841 - +0.6 3,414,950 + IAI46_16290 0.11 +1.1 3,415,083 + IAI46_16290 0.24 +0.4 3,415,084 - IAI46_16290 0.24 +1.7 3,415,116 - IAI46_16290 0.27 -0.6 3,415,116 - IAI46_16290 0.27 -0.1 3,415,173 + IAI46_16290 0.32 -0.0 3,415,174 - IAI46_16290 0.32 -1.0 3,415,325 + IAI46_16290 0.47 -0.1 3,415,439 + IAI46_16290 0.58 -0.7 3,415,458 + IAI46_16290 0.59 +0.9 3,415,539 - IAI46_16290 0.67 -1.2 3,415,675 - IAI46_16290 0.80 +0.1 3,415,745 + IAI46_16290 0.87 +1.5 3,415,884 + +1.3 3,415,884 + +0.0 3,415,885 - -0.2 3,415,960 - -0.0 3,415,969 + -1.5 3,415,970 - -0.4 3,415,972 - +1.8 3,415,972 - -0.1 3,415,976 - -0.3 3,415,976 - -0.7 3,416,441 - IAI46_16295 0.47 +1.0 3,416,441 - IAI46_16295 0.47 +0.5 3,416,509 - IAI46_16295 0.55 +1.7 3,416,605 + IAI46_16295 0.65 -1.3 3,416,605 + IAI46_16295 0.65 -2.5 3,416,605 + IAI46_16295 0.65 +0.2 3,416,606 - IAI46_16295 0.65 +0.3 3,416,664 - IAI46_16295 0.71 -0.4 3,416,664 - IAI46_16295 0.71 -0.5 3,416,856 + -0.3 3,416,879 + -1.6 3,416,880 - -0.1 3,416,880 - +0.6
Or see this region's nucleotide sequence