Strain Fitness in Serratia liquefaciens MT49 around IAI46_15645

Experiment: Cobalt chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_15635 and IAI46_15640 overlap by 4 nucleotidesIAI46_15640 and IAI46_15645 overlap by 11 nucleotidesIAI46_15645 and IAI46_15650 overlap by 4 nucleotides IAI46_15635: IAI46_15635 - ABC transporter ATP-binding protein, at 3,280,571 to 3,281,242 _15635 IAI46_15640: IAI46_15640 - ABC transporter ATP-binding protein, at 3,281,239 to 3,282,075 _15640 IAI46_15645: IAI46_15645 - ABC transporter permease, at 3,282,065 to 3,282,934 _15645 IAI46_15650: IAI46_15650 - ABC transporter permease, at 3,282,931 to 3,283,983 _15650 Position (kb) 3282 3283Strain fitness (log2 ratio) -1 0 1at 3281.394 kb on - strand, within IAI46_15640at 3281.394 kb on - strand, within IAI46_15640at 3281.417 kb on + strand, within IAI46_15640at 3281.463 kb on + strand, within IAI46_15640at 3281.463 kb on + strand, within IAI46_15640at 3281.463 kb on + strand, within IAI46_15640at 3281.463 kb on + strand, within IAI46_15640at 3281.463 kb on + strand, within IAI46_15640at 3281.464 kb on - strand, within IAI46_15640at 3281.464 kb on - strand, within IAI46_15640at 3281.466 kb on + strand, within IAI46_15640at 3281.466 kb on + strand, within IAI46_15640at 3281.466 kb on + strand, within IAI46_15640at 3281.466 kb on + strand, within IAI46_15640at 3281.467 kb on - strand, within IAI46_15640at 3281.467 kb on - strand, within IAI46_15640at 3281.467 kb on - strand, within IAI46_15640at 3281.467 kb on - strand, within IAI46_15640at 3281.718 kb on + strand, within IAI46_15640at 3281.893 kb on + strand, within IAI46_15640at 3282.063 kb on + strandat 3282.377 kb on - strand, within IAI46_15645at 3282.572 kb on - strand, within IAI46_15645at 3282.647 kb on + strand, within IAI46_15645at 3282.681 kb on + strand, within IAI46_15645at 3282.925 kb on - strandat 3282.925 kb on - strandat 3282.953 kb on - strandat 3282.953 kb on - strandat 3282.956 kb on + strandat 3283.064 kb on + strand, within IAI46_15650at 3283.130 kb on + strand, within IAI46_15650at 3283.131 kb on - strand, within IAI46_15650at 3283.131 kb on - strand, within IAI46_15650at 3283.177 kb on + strand, within IAI46_15650at 3283.194 kb on + strand, within IAI46_15650at 3283.195 kb on - strand, within IAI46_15650at 3283.235 kb on + strand, within IAI46_15650at 3283.236 kb on - strand, within IAI46_15650at 3283.346 kb on + strand, within IAI46_15650at 3283.347 kb on - strand, within IAI46_15650at 3283.415 kb on + strand, within IAI46_15650at 3283.416 kb on - strand, within IAI46_15650at 3283.421 kb on + strand, within IAI46_15650at 3283.422 kb on - strand, within IAI46_15650at 3283.422 kb on - strand, within IAI46_15650at 3283.470 kb on - strand, within IAI46_15650at 3283.593 kb on + strand, within IAI46_15650at 3283.693 kb on - strand, within IAI46_15650at 3283.793 kb on + strand, within IAI46_15650at 3283.794 kb on - strand, within IAI46_15650at 3283.794 kb on - strand, within IAI46_15650at 3283.834 kb on - strand, within IAI46_15650at 3283.834 kb on - strand, within IAI46_15650at 3283.834 kb on - strand, within IAI46_15650at 3283.863 kb on + strand, within IAI46_15650at 3283.864 kb on - strand, within IAI46_15650

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic
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3,281,394 - IAI46_15640 0.19 +0.4
3,281,394 - IAI46_15640 0.19 -0.3
3,281,417 + IAI46_15640 0.21 -0.9
3,281,463 + IAI46_15640 0.27 -0.1
3,281,463 + IAI46_15640 0.27 -0.9
3,281,463 + IAI46_15640 0.27 -0.3
3,281,463 + IAI46_15640 0.27 -0.3
3,281,463 + IAI46_15640 0.27 +0.3
3,281,464 - IAI46_15640 0.27 +1.3
3,281,464 - IAI46_15640 0.27 -1.3
3,281,466 + IAI46_15640 0.27 +0.4
3,281,466 + IAI46_15640 0.27 +0.4
3,281,466 + IAI46_15640 0.27 +0.7
3,281,466 + IAI46_15640 0.27 +0.2
3,281,467 - IAI46_15640 0.27 +0.6
3,281,467 - IAI46_15640 0.27 +0.6
3,281,467 - IAI46_15640 0.27 -1.5
3,281,467 - IAI46_15640 0.27 +0.7
3,281,718 + IAI46_15640 0.57 -0.3
3,281,893 + IAI46_15640 0.78 -0.8
3,282,063 + -0.5
3,282,377 - IAI46_15645 0.36 -1.5
3,282,572 - IAI46_15645 0.58 -0.6
3,282,647 + IAI46_15645 0.67 +0.2
3,282,681 + IAI46_15645 0.71 -0.9
3,282,925 - +0.3
3,282,925 - -1.0
3,282,953 - +1.2
3,282,953 - -0.3
3,282,956 + +0.5
3,283,064 + IAI46_15650 0.13 -1.0
3,283,130 + IAI46_15650 0.19 +1.4
3,283,131 - IAI46_15650 0.19 -1.0
3,283,131 - IAI46_15650 0.19 +0.8
3,283,177 + IAI46_15650 0.23 +0.2
3,283,194 + IAI46_15650 0.25 -0.1
3,283,195 - IAI46_15650 0.25 +0.1
3,283,235 + IAI46_15650 0.29 -0.7
3,283,236 - IAI46_15650 0.29 +0.6
3,283,346 + IAI46_15650 0.39 -0.7
3,283,347 - IAI46_15650 0.40 -0.6
3,283,415 + IAI46_15650 0.46 -0.6
3,283,416 - IAI46_15650 0.46 -0.6
3,283,421 + IAI46_15650 0.47 +0.3
3,283,422 - IAI46_15650 0.47 -0.6
3,283,422 - IAI46_15650 0.47 -0.9
3,283,470 - IAI46_15650 0.51 -0.7
3,283,593 + IAI46_15650 0.63 +0.4
3,283,693 - IAI46_15650 0.72 +0.4
3,283,793 + IAI46_15650 0.82 +1.4
3,283,794 - IAI46_15650 0.82 -0.7
3,283,794 - IAI46_15650 0.82 -0.0
3,283,834 - IAI46_15650 0.86 +0.3
3,283,834 - IAI46_15650 0.86 -0.5
3,283,834 - IAI46_15650 0.86 +0.3
3,283,863 + IAI46_15650 0.89 -0.3
3,283,864 - IAI46_15650 0.89 -1.5

Or see this region's nucleotide sequence