Experiment: Cobalt chloride 80 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_15340 and IAI46_15345 are separated by 61 nucleotides IAI46_15345 and IAI46_15350 overlap by 11 nucleotides IAI46_15350 and IAI46_15355 are separated by 4 nucleotides
IAI46_15340: IAI46_15340 - extracellular solute-binding protein, at 3,211,306 to 3,212,580
_15340
IAI46_15345: IAI46_15345 - sugar ABC transporter permease, at 3,212,642 to 3,213,583
_15345
IAI46_15350: IAI46_15350 - carbohydrate ABC transporter permease, at 3,213,573 to 3,214,406
_15350
IAI46_15355: IAI46_15355 - leucyl aminopeptidase family protein, at 3,214,411 to 3,215,823
_15355
Position (kb)
3213
3214
3215 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3212.647 kb on + strand at 3212.647 kb on + strand at 3212.832 kb on - strand, within IAI46_15345 at 3212.834 kb on + strand, within IAI46_15345 at 3212.881 kb on + strand, within IAI46_15345 at 3213.000 kb on - strand, within IAI46_15345 at 3213.203 kb on - strand, within IAI46_15345 at 3213.203 kb on - strand, within IAI46_15345 at 3213.203 kb on - strand, within IAI46_15345 at 3213.213 kb on - strand, within IAI46_15345 at 3213.249 kb on - strand, within IAI46_15345 at 3213.298 kb on + strand, within IAI46_15345 at 3213.326 kb on - strand, within IAI46_15345 at 3213.441 kb on - strand, within IAI46_15345 at 3213.447 kb on - strand, within IAI46_15345 at 3213.447 kb on - strand, within IAI46_15345 at 3213.465 kb on - strand, within IAI46_15345 at 3213.473 kb on - strand, within IAI46_15345 at 3213.618 kb on + strand at 3213.663 kb on + strand, within IAI46_15350 at 3213.801 kb on + strand, within IAI46_15350 at 3213.801 kb on + strand, within IAI46_15350 at 3213.802 kb on - strand, within IAI46_15350 at 3213.871 kb on - strand, within IAI46_15350 at 3213.896 kb on - strand, within IAI46_15350 at 3213.896 kb on - strand, within IAI46_15350 at 3213.896 kb on - strand, within IAI46_15350 at 3213.896 kb on - strand, within IAI46_15350 at 3214.023 kb on - strand, within IAI46_15350 at 3214.050 kb on + strand, within IAI46_15350 at 3214.051 kb on - strand, within IAI46_15350 at 3214.051 kb on - strand, within IAI46_15350 at 3214.120 kb on + strand, within IAI46_15350 at 3214.190 kb on + strand, within IAI46_15350 at 3214.205 kb on + strand, within IAI46_15350 at 3214.206 kb on - strand, within IAI46_15350 at 3214.349 kb on + strand at 3214.349 kb on + strand at 3214.350 kb on - strand at 3214.425 kb on + strand at 3214.425 kb on + strand at 3214.770 kb on + strand, within IAI46_15355 at 3214.884 kb on + strand, within IAI46_15355 at 3215.082 kb on + strand, within IAI46_15355 at 3215.208 kb on + strand, within IAI46_15355 at 3215.208 kb on + strand, within IAI46_15355 at 3215.208 kb on + strand, within IAI46_15355 at 3215.209 kb on - strand, within IAI46_15355 at 3215.387 kb on - strand, within IAI46_15355
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic remove 3,212,647 + -0.9 3,212,647 + +1.1 3,212,832 - IAI46_15345 0.20 +0.2 3,212,834 + IAI46_15345 0.20 -0.6 3,212,881 + IAI46_15345 0.25 +1.1 3,213,000 - IAI46_15345 0.38 +0.8 3,213,203 - IAI46_15345 0.60 -1.1 3,213,203 - IAI46_15345 0.60 +1.7 3,213,203 - IAI46_15345 0.60 -0.6 3,213,213 - IAI46_15345 0.61 +0.2 3,213,249 - IAI46_15345 0.64 +0.1 3,213,298 + IAI46_15345 0.70 +0.7 3,213,326 - IAI46_15345 0.73 +0.3 3,213,441 - IAI46_15345 0.85 +0.4 3,213,447 - IAI46_15345 0.85 -0.1 3,213,447 - IAI46_15345 0.85 +0.1 3,213,465 - IAI46_15345 0.87 +0.4 3,213,473 - IAI46_15345 0.88 +1.0 3,213,618 + +1.0 3,213,663 + IAI46_15350 0.11 -0.8 3,213,801 + IAI46_15350 0.27 +0.2 3,213,801 + IAI46_15350 0.27 +1.3 3,213,802 - IAI46_15350 0.27 -0.5 3,213,871 - IAI46_15350 0.36 +1.3 3,213,896 - IAI46_15350 0.39 +0.5 3,213,896 - IAI46_15350 0.39 -0.7 3,213,896 - IAI46_15350 0.39 +0.3 3,213,896 - IAI46_15350 0.39 +0.4 3,214,023 - IAI46_15350 0.54 +0.2 3,214,050 + IAI46_15350 0.57 -1.6 3,214,051 - IAI46_15350 0.57 +0.7 3,214,051 - IAI46_15350 0.57 -0.4 3,214,120 + IAI46_15350 0.66 +1.0 3,214,190 + IAI46_15350 0.74 +0.3 3,214,205 + IAI46_15350 0.76 -1.6 3,214,206 - IAI46_15350 0.76 +1.8 3,214,349 + +2.8 3,214,349 + -0.2 3,214,350 - -1.3 3,214,425 + -0.2 3,214,425 + +1.4 3,214,770 + IAI46_15355 0.25 +0.2 3,214,884 + IAI46_15355 0.33 +2.2 3,215,082 + IAI46_15355 0.47 -0.2 3,215,208 + IAI46_15355 0.56 -0.3 3,215,208 + IAI46_15355 0.56 -0.3 3,215,208 + IAI46_15355 0.56 +0.3 3,215,209 - IAI46_15355 0.56 -0.6 3,215,387 - IAI46_15355 0.69 -0.3
Or see this region's nucleotide sequence